mRNA_P-littoralis_Contig101.50.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig101.50.2
Unique NamemRNA_P-littoralis_Contig101.50.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig101.50.2 vs. uniprot
Match: A0A6H5KPP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPP3_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 6.750e-31
Identity = 80/185 (43.24%), Postives = 105/185 (56.76%), Query Frame = 1
Query:    7 PSGCVWAERTLLTRESPMDVVDIIAEMVVPPNLLVYNAACKTVRAFEERCPGLL-DNGGKLPRVAVEAGSTAVGRVVLPHLAHLGNHSGSATQTPLRASSVNTPDRVSSQDVYALKHFSLPQPSPQSQADEHNALYMAARIQGGEAGPETLRAATRALTVLHGSGVKILSLFEVLVFSYHWHVQA 558
            P+G + A + L T ESP DVVD +  M V P LL Y+AACK V+  E+ CP LL D  G L R          G VV P L H+GN+  SAT+     +  + P     +D+YA+   + P+P  QS+ D   AL+ AA+      G   L A TRAL  LH  GV++LSLFEVLVF+Y+WH +A
Sbjct:  671 PAGVMVAWKVLPTAESPNDVVDFMRWMKVKPYLLSYDAACKLVKELEKYCPALLKDKTGVLQR-------DGEGNVVFPELVHVGNNRNSATRETAARTFQDLPRTTDREDMYAVIETAGPRPGLQSEVDSDEALFWAAKFSKVVGGQSKLTA-TRALDALHRDGVRVLSLFEVLVFTYYWHRKA 847          
BLAST of mRNA_P-littoralis_Contig101.50.2 vs. uniprot
Match: A0A6H5JGB2_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGB2_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.710e-16
Identity = 68/193 (35.23%), Postives = 95/193 (49.22%), Query Frame = 1
Query:   97 PNLLVYNAACKTVRAFEERCPGLLDNGGKLPRVA------------------VEAGSTA-VGRVVLPHLAHLGNHSGSATQTPLRASSVNTPDRVSSQDVYALKHFSLPQPSPQSQADEHNALYMAARIQGGEAGPETLR-AATRALTVLHGSGVKILSLFEVLVFSYHWHVQARESGSQVAVLGSDGWTTEK 615
            P L +Y+A CK V   E+  PG+L N G+  R+                    E G  A   R+ L  LAHLG++S S T    + S    P R S  DVYALK  +      Q+Q + ++ L+ +A  QG    PE +  AATRA+  L  +G+++LS FEVLVF+Y W     E    +  LG+ GWT  +
Sbjct:  250 PVLGMYDAGCKAVAHMEKHLPGVLQNRGRPTRLGDDGVGGGGSGYSNAASNDTEDGEPAPTPRIFLQALAHLGSNSASTTVEAPQVSLPVPPKRDSKVDVYALKAAAQGD-RVQNQVNVYDLLHASAETQGPV--PEAVNLAATRAVAALREAGIRVLSFFEVLVFTYVWLRNIAEDEPGMLELGATGWTLRR 439          
BLAST of mRNA_P-littoralis_Contig101.50.2 vs. uniprot
Match: A0A6H5JGH9_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGH9_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 5.340e-13
Identity = 54/130 (41.54%), Postives = 71/130 (54.62%), Query Frame = 1
Query:  226 RVVLPHLAHLGNHSGSATQTPLRASSVNTPDRVSSQDVYALKHFSLPQPSPQSQADEHNALYMAARIQGGEAGPETLRAATRALTVLHGSGVKILSLFEVLVFSYHWHVQARESGSQVAVLGSDGWTTEK 615
            RV  P LAHLG+HS S T    + S    P R S  DVYALK  +      QSQ + ++ L+ +A  QG       L AATRA+  L  +GV++LSLFEVL+F+Y W     E    +  LG+ GWT  +
Sbjct:  402 RVFFPALAHLGSHSSSTTVEAPQVSVPVPPKRDSKVDVYALKAAAQGD-RVQSQVNVYDLLHASAETQGPVPKAVNL-AATRAVAGLREAGVRVLSLFEVLIFTYVWLRNIAEDEPGMLELGATGWTLRR 529          
BLAST of mRNA_P-littoralis_Contig101.50.2 vs. uniprot
Match: A0A6H5JN33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN33_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.290e-10
Identity = 50/130 (38.46%), Postives = 70/130 (53.85%), Query Frame = 1
Query:  226 RVVLPHLAHLGNHSGSATQTPLRASSVNTPDRVSSQDVYALKHFSLPQPSPQSQADEHNALYMAARIQGGEAGPETLRAATRALTVLHGSGVKILSLFEVLVFSYHWHVQARESGSQVAVLGSDGWTTEK 615
            RV LP LAHLG+++ S T    +      P R S  D+ ALK  +      QSQ + ++ L+ +A  QG       L AATRA+  L  +G+++LSLFEVLVF+Y W     E    +  LG+ GWT  +
Sbjct:   57 RVFLPALAHLGSNNASTTVEAPQVFLPVPPKRDSKVDLCALKAAAQGD-RVQSQVNVYDLLHASAETQGPVPKAANL-AATRAVAALWEAGIRVLSLFEVLVFTYVWLRNITEDEPDMLELGATGWTLRR 184          
BLAST of mRNA_P-littoralis_Contig101.50.2 vs. uniprot
Match: A0A6H5KXC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXC8_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.970e-7
Identity = 47/129 (36.43%), Postives = 68/129 (52.71%), Query Frame = 1
Query:  226 RVVLPHLAHLGNHSGSATQTPLRASSVNTPDRVSSQDVYALKHFSLPQPSPQSQADEHNALYMAARIQGGEAGPETLRAATRALTVLHG--SGVKILSLFEVLVFSYHWHVQARESGSQVAVLGSDGWT 606
            RV  P LAHLG++S S +    + S    P R S  DVYAL + +      QSQ + ++ L+ +   QG       L AATRA+  L    +G+++LSLF+ LVF+Y W     E    +  +G+ GWT
Sbjct:   50 RVFSPALAHLGSNSASTSVEAPQVSIHVPPKRYSKVDVYAL-NAAAQGDRGQSQVNVYDLLHASDETQGPVPKAVYL-AATRAVAALRDREAGIRVLSLFKALVFTYVWLRNIAEDEPGMLEIGATGWT 176          
BLAST of mRNA_P-littoralis_Contig101.50.2 vs. uniprot
Match: A0A6H5KPP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPP6_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.370e-6
Identity = 40/119 (33.61%), Postives = 62/119 (52.10%), Query Frame = 1
Query:  259 NHSGSATQTPLRASSVNTPDRVSSQDVYALKHFSLPQPSPQSQADEHNALYMAARIQGGEAGPETLRAATRALTVLHGSGVKILSLFEVLVFSYHWHVQARESGSQVAVLGSDGWTTEK 615
            N+S S T    + S   TP R S  DVYALK  +      Q+Q + ++ L+ +A  +G       L AATR +  L  + ++++SLFEVL+F+Y W     E    +  +G+ GWT  +
Sbjct:   15 NNSASTTVEAPQVSLPVTPKRDSKVDVYALKAAAQGD-RVQNQVNVYDLLHASAETRGPVPKAVNL-AATRDVAALREAAIRVISLFEVLIFTYVWLRNIAEDEPGMLEIGAPGWTLRR 131          
BLAST of mRNA_P-littoralis_Contig101.50.2 vs. uniprot
Match: A0A6H5L3W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3W5_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 4.680e-6
Identity = 33/75 (44.00%), Postives = 43/75 (57.33%), Query Frame = 1
Query:   40 LTRESPMDVVDIIAEMVVPPNLLVYNAACKTVRAFEERCPGLLDNGGKLPRVAVEAGSTAVGRVVLPHLAHLGNH 264
            +T ES  DVVDI+A ++V P L++ +  CK V   E   PGLL +GG LPR        A G+V L  L H+G H
Sbjct:   42 VTPESAADVVDILAHILVQPCLVITDIPCKIVPIAERLFPGLLQDGGVLPR-------DAEGQVCLKELQHIGAH 109          
BLAST of mRNA_P-littoralis_Contig101.50.2 vs. uniprot
Match: A0A6H5JT09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT09_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.110e-5
Identity = 38/99 (38.38%), Postives = 53/99 (53.54%), Query Frame = 1
Query:  319 RVSSQDVYALKHFSLPQPSPQSQADEHNALYMAARIQGGEAGPETLRAATRALTVLHGSGVKILSLFEVLVFSYHWHVQARESGSQVAVLGSDGWTTEK 615
            R S  DVYALK  +      QSQ + ++ L  +A  QG       L AATRA+  L  +G+++L LFEVL+F+Y W     E    +  LG+ GWT  +
Sbjct:   43 RDSKVDVYALKAAAQGD-RVQSQLNVYDLLLASAETQGPVPKAVNL-AATRAVAALREAGIRVLFLFEVLIFTYVWLRNIAEDEPGMLELGATGWTLRR 139          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig101.50.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KPP3_9PHAE6.750e-3143.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGB2_9PHAE1.710e-1635.23CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JGH9_9PHAE5.340e-1341.54CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JN33_9PHAE1.290e-1038.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXC8_9PHAE2.970e-736.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPP6_9PHAE1.370e-633.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3W5_9PHAE4.680e-644.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT09_9PHAE1.110e-538.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig101contigP-littoralis_Contig101:127214..128038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size669
Hectar predicted targeting categoryother localisation
Exons2
Cds size666
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789349.8734667-CDS-P-littoralis_Contig101:127213..1273031680789349.8734667-CDS-P-littoralis_Contig101:127213..127303Pylaiella littoralis U1_48CDSP-littoralis_Contig101 127214..127303 +
1680789349.883035-CDS-P-littoralis_Contig101:127461..1280371680789349.883035-CDS-P-littoralis_Contig101:127461..128037Pylaiella littoralis U1_48CDSP-littoralis_Contig101 127462..128037 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig101.50.2prot_P-littoralis_Contig101.50.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig101 127214..128037 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig101.50.2

>prot_P-littoralis_Contig101.50.2 ID=prot_P-littoralis_Contig101.50.2|Name=mRNA_P-littoralis_Contig101.50.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=222bp
LVPSGCVWAERTLLTRESPMDVVDIIAEMVVPPNLLVYNAACKTVRAFEE
RCPGLLDNGGKLPRVAVEAGSTAVGRVVLPHLAHLGNHSGSATQTPLRAS
SVNTPDRVSSQDVYALKHFSLPQPSPQSQADEHNALYMAARIQGGEAGPE
TLRAATRALTVLHGSGVKILSLFEVLVFSYHWHVQARESGSQVAVLGSDG
WTTEKQGQAQGQGQGQMHGLAQ
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mRNA from alignment at P-littoralis_Contig101:127214..128038+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig101.50.2 ID=mRNA_P-littoralis_Contig101.50.2|Name=mRNA_P-littoralis_Contig101.50.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=825bp|location=Sequence derived from alignment at P-littoralis_Contig101:127214..128038+ (Pylaiella littoralis U1_48)
TTAGTCCCGTCCGGGTGTGTGTGGGCAGAGCGGACTTTGCTGACGCGCGA GAGCCCGATGGACGTAGTCGACATCATTGCCGAGATGGTGGTAAGCTTCC TGTTGGAGCACCGCAATACGCATCTGCAGCAGGTCAAACCGTACCCGACA TAGGCACGTGGTGTTAGAATTATGCATGTCTCTTTCCCCGTGCCAAAAAA TACATCTGGGCGTTTTTTTTCTGCCGTGGTATCACGTTCAACAAACAGGT CCCACCGAATCTTCTGGTTTATAACGCAGCATGCAAGACTGTTCGTGCTT TCGAGGAGAGGTGTCCGGGCTTACTAGACAACGGGGGGAAGCTACCGCGC GTTGCAGTAGAAGCGGGGTCGACAGCGGTGGGGCGCGTGGTGCTCCCCCA CCTTGCCCACCTGGGGAACCATAGCGGAAGCGCTACGCAGACGCCCCTGC GCGCCTCGTCTGTCAATACGCCCGACAGGGTGAGCTCTCAAGACGTGTAC GCCCTCAAGCACTTTTCTTTGCCTCAGCCATCTCCTCAAAGCCAAGCAGA CGAGCACAATGCTCTCTACATGGCGGCTAGAATACAAGGGGGAGAAGCGG GCCCGGAAACCCTACGGGCGGCTACGAGGGCCTTGACGGTCTTGCATGGA AGCGGCGTGAAGATACTGTCATTGTTCGAGGTGCTCGTATTCAGCTATCA CTGGCATGTACAGGCAAGGGAGTCTGGGTCACAAGTGGCGGTGCTGGGGA GCGACGGGTGGACCACGGAGAAGCAGGGGCAGGCACAGGGACAGGGGCAG GGGCAAATGCATGGGCTGGCGCAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig101:127214..128038+

>mRNA_P-littoralis_Contig101.50.2 ID=mRNA_P-littoralis_Contig101.50.2|Name=mRNA_P-littoralis_Contig101.50.2|organism=Pylaiella littoralis U1_48|type=CDS|length=666bp|location=Sequence derived from alignment at P-littoralis_Contig101:127214..128038+ (Pylaiella littoralis U1_48)
TTAGTCCCGTCCGGGTGTGTGTGGGCAGAGCGGACTTTGCTGACGCGCGA
GAGCCCGATGGACGTAGTCGACATCATTGCCGAGATGGTGGTCCCACCGA
ATCTTCTGGTTTATAACGCAGCATGCAAGACTGTTCGTGCTTTCGAGGAG
AGGTGTCCGGGCTTACTAGACAACGGGGGGAAGCTACCGCGCGTTGCAGT
AGAAGCGGGGTCGACAGCGGTGGGGCGCGTGGTGCTCCCCCACCTTGCCC
ACCTGGGGAACCATAGCGGAAGCGCTACGCAGACGCCCCTGCGCGCCTCG
TCTGTCAATACGCCCGACAGGGTGAGCTCTCAAGACGTGTACGCCCTCAA
GCACTTTTCTTTGCCTCAGCCATCTCCTCAAAGCCAAGCAGACGAGCACA
ATGCTCTCTACATGGCGGCTAGAATACAAGGGGGAGAAGCGGGCCCGGAA
ACCCTACGGGCGGCTACGAGGGCCTTGACGGTCTTGCATGGAAGCGGCGT
GAAGATACTGTCATTGTTCGAGGTGCTCGTATTCAGCTATCACTGGCATG
TACAGGCAAGGGAGTCTGGGTCACAAGTGGCGGTGCTGGGGAGCGACGGG
TGGACCACGGAGAAGCAGGGGCAGGCACAGGGACAGGGGCAGGGGCAAAT
GCATGGGCTGGCGCAG
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