mRNA_P-littoralis_Contig101.45.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig101.45.1
Unique NamemRNA_P-littoralis_Contig101.45.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig101.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig101contigP-littoralis_Contig101:122129..123412 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size706
Hectar predicted targeting categoryother localisation
Exons2
Cds size705
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789348.6679618-CDS-P-littoralis_Contig101:122128..1225681680789348.6679618-CDS-P-littoralis_Contig101:122128..122568Pylaiella littoralis U1_48CDSP-littoralis_Contig101 122129..122568 +
1680789348.6795802-CDS-P-littoralis_Contig101:123147..1234121680789348.6795802-CDS-P-littoralis_Contig101:123147..123412Pylaiella littoralis U1_48CDSP-littoralis_Contig101 123148..123412 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig101.45.1prot_P-littoralis_Contig101.45.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig101 122129..123412 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig101.45.1

>prot_P-littoralis_Contig101.45.1 ID=prot_P-littoralis_Contig101.45.1|Name=mRNA_P-littoralis_Contig101.45.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=235bp
GSGSPLVAIRPRVSEETVKDSAQGTVGSRSSAGDGKVPGPDEPQPSGGDS
SSTGAPLSGAKRTVETYLKYNSACSKCNMTEPNSKRRVRLCDRGDCGRWV
HKHESSAFATIPSVSPGHEQFSMGRKTTTSKCCVHNNVFQSQCPCRSCVR
RRRSKNRRGRGGRAAGRGAAGRAQGTQTGRKTQVWNADAVYVLPAGERDE
STTLSVGIYGANRVITSVNSKTKGSSCSRPNCHT*
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mRNA from alignment at P-littoralis_Contig101:122129..123412+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig101.45.1 ID=mRNA_P-littoralis_Contig101.45.1|Name=mRNA_P-littoralis_Contig101.45.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1284bp|location=Sequence derived from alignment at P-littoralis_Contig101:122129..123412+ (Pylaiella littoralis U1_48)
GGTAGCGGTAGTCCGCTGGTAGCAATACGGCCCCGAGTTTCTGAAGAAAC
GGTCAAAGATAGTGCACAAGGGACCGTGGGTAGCAGGAGCAGCGCAGGAG
ATGGGAAAGTCCCTGGGCCCGATGAACCACAACCAAGCGGTGGCGACAGC
AGCAGCACAGGTGCGCCGCTTTCAGGCGCAAAACGTACGGTCGAAACGTA
CTTGAAATACAACTCTGCATGCAGCAAGTGCAACATGACCGAACCGAATT
CAAAGAGGAGGGTACGGCTGTGTGACCGCGGCGATTGCGGGCGGTGGGTT
CACAAGCACGAAAGTAGCGCGTTCGCCACTATCCCCTCGGTGTCCCCGGG
ACATGAACAATTCAGCATGGGCCGCAAGACCACCACCTCCAAGTGCTGCG
TCCACAACAACGTGTTCCAAAGCCAGTGCCCCTGCCGCAGGTAAGAGTGT
GATGCGAAACGTCCGGAAGCACAACGATCGGCGATGTCTCTCTGTTACGA
TCCCTGGCAAAAACAGGATATGTCAATGAAGATCAACGCCCCCCCGCCGA
ATATTCTTGTTTTATGTACTCAAGTATAGTATCATTGGGTTCGGAGAAGG
TCGACGAGGACAAATGGAGTTGAATATATGGGTCGTTGTGTGTTGGCTCC
GCGCCTGGTTTTCGGAAGGAAGTACAAATGGATTGGGGTACAGGTCGAAA
TGTACAGGACCCCTATGTTGAAGAATTAGTGCTGTGGCGGTTGATATCCT
TGTTTCATTCACGTTCCAACAGCTGCGCGAACGTGAATGTAGTGCAAAAC
ACGAACAAGACGAGACCGTGGCAGAGCCCTCGCTTGCAACATTTCGATTT
TTTTTTTAGCGCTTAAATTATCCCTCGGTATTGCAAAGTAGCCGTCAGGC
CTTGTGTACCTTCTTTAGCGTCAAGACTAGTCGTACACCTTCGCACATCT
TTGTGAAAGGTAACGCACATGTAATTTGAACGAACCTTTTGTTCTGCCTC
TGCCATCGGTACCTTCCAGCTGCGTTAGGCGCAGGCGCTCGAAGAACAGG
CGGGGAAGGGGAGGTCGAGCAGCGGGACGAGGAGCTGCCGGCCGCGCGCA
GGGCACACAAACTGGAAGAAAGACGCAAGTGTGGAACGCGGATGCCGTCT
ACGTACTGCCGGCGGGTGAGCGAGATGAGAGCACAACCCTGTCAGTGGGC
ATTTACGGCGCGAACAGAGTGATAACATCGGTGAACTCGAAGACCAAGGG
TTCCAGCTGCTCACGGCCAAATTGCCACACGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig101:122129..123412+

>mRNA_P-littoralis_Contig101.45.1 ID=mRNA_P-littoralis_Contig101.45.1|Name=mRNA_P-littoralis_Contig101.45.1|organism=Pylaiella littoralis U1_48|type=CDS|length=705bp|location=Sequence derived from alignment at P-littoralis_Contig101:122129..123412+ (Pylaiella littoralis U1_48)
GGTAGCGGTAGTCCGCTGGTAGCAATACGGCCCCGAGTTTCTGAAGAAAC
GGTCAAAGATAGTGCACAAGGGACCGTGGGTAGCAGGAGCAGCGCAGGAG
ATGGGAAAGTCCCTGGGCCCGATGAACCACAACCAAGCGGTGGCGACAGC
AGCAGCACAGGTGCGCCGCTTTCAGGCGCAAAACGTACGGTCGAAACGTA
CTTGAAATACAACTCTGCATGCAGCAAGTGCAACATGACCGAACCGAATT
CAAAGAGGAGGGTACGGCTGTGTGACCGCGGCGATTGCGGGCGGTGGGTT
CACAAGCACGAAAGTAGCGCGTTCGCCACTATCCCCTCGGTGTCCCCGGG
ACATGAACAATTCAGCATGGGCCGCAAGACCACCACCTCCAAGTGCTGCG
TCCACAACAACGTGTTCCAAAGCCAGTGCCCCTGCCGCAGCTGCGTTAGG
CGCAGGCGCTCGAAGAACAGGCGGGGAAGGGGAGGTCGAGCAGCGGGACG
AGGAGCTGCCGGCCGCGCGCAGGGCACACAAACTGGAAGAAAGACGCAAG
TGTGGAACGCGGATGCCGTCTACGTACTGCCGGCGGGTGAGCGAGATGAG
AGCACAACCCTGTCAGTGGGCATTTACGGCGCGAACAGAGTGATAACATC
GGTGAACTCGAAGACCAAGGGTTCCAGCTGCTCACGGCCAAATTGCCACA
CGTGA
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