mRNA_P-littoralis_Contig101.43.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig101.43.1
Unique NamemRNA_P-littoralis_Contig101.43.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig101.43.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.410e-11
Identity = 41/111 (36.94%), Postives = 59/111 (53.15%), Query Frame = 3 
Query:  282 LWDCDQFWPHLKVVVLGWTAVNAGALVEDGGVLFRSKKFYSQPVVEKYSCPSDSSGLTC----DAVDNALMMVLESILEFCPNEKWGGDLTALWTSEALGITVKLVVPTDM 602
            LW+ D++W  LK+VVL W A +A  LV +G VL      +S  +   ++    +   TC     +V     M+L S+   C +  WGGD T L  S+AL ITVKL+ P D+
Sbjct:   26 LWESDEYWSQLKLVVLAWAAAHAEELVSEGRVLSDFSLHFSDDI---HAGLGYAYSATCVGAAPSVAQTSRMLLASVAYDCEDTVWGGDFTLLLASQALKITVKLLSPNDV 133
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BLAST of mRNA_P-littoralis_Contig101.43.1 vs. uniprot
Match: D8LRA5_ECTSI (SEC7 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRA5_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 6.020e-7
Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   49 MLPATAPGRNTPHGQDASALGASVDLFLLLARLCGHHHGLQN 174
            +L A +    T  G+DASALGASVDLFL+LA+LCGHH GLQN
Sbjct:  792 VLKAASAAFATMQGRDASALGASVDLFLILAKLCGHHPGLQN 833
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BLAST of mRNA_P-littoralis_Contig101.43.1 vs. uniprot
Match: A0A6H5L0P9_9PHAE (SEC7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0P9_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 6.960e-7
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   49 MLPATAPGRNTPHGQDASALGASVDLFLLLARLCGHHHGLQN 174
            +L A +    T  G+DA ALGASVDLFL+LARLCGHH GLQN
Sbjct:  104 VLKAASAAFATRQGRDALALGASVDLFLILARLCGHHRGLQN 145
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig101.43.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K454_9PHAE1.410e-1136.94SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LRA5_ECTSI6.020e-766.67SEC7 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L0P9_9PHAE6.960e-766.67SEC7 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig101contigP-littoralis_Contig101:118959..121295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size603
Hectar predicted targeting categorysignal peptide
Exons3
Cds size345
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789348.589134-UTR-P-littoralis_Contig101:118958..1190421680789348.589134-UTR-P-littoralis_Contig101:118958..119042Pylaiella littoralis U1_48UTRP-littoralis_Contig101 118959..119042 +
1680789348.603511-UTR-P-littoralis_Contig101:119861..1198711680789348.603511-UTR-P-littoralis_Contig101:119861..119871Pylaiella littoralis U1_48UTRP-littoralis_Contig101 119862..119871 +
1680789348.6310935-UTR-P-littoralis_Contig101:121131..1212951680789348.6310935-UTR-P-littoralis_Contig101:121131..121295Pylaiella littoralis U1_48UTRP-littoralis_Contig101 121132..121295 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789348.6113617-CDS-P-littoralis_Contig101:119871..1199481680789348.6113617-CDS-P-littoralis_Contig101:119871..119948Pylaiella littoralis U1_48CDSP-littoralis_Contig101 119872..119948 +
1680789348.6201334-CDS-P-littoralis_Contig101:120863..1211311680789348.6201334-CDS-P-littoralis_Contig101:120863..121131Pylaiella littoralis U1_48CDSP-littoralis_Contig101 120864..121131 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig101.43.1prot_P-littoralis_Contig101.43.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig101 119872..121131 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig101.43.1

>prot_P-littoralis_Contig101.43.1 ID=prot_P-littoralis_Contig101.43.1|Name=mRNA_P-littoralis_Contig101.43.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=115bp
MRQLWERLWTSSCFLRGFAVITMGFRIYHGWTGTQRRLSENGCATFGKRG
LSKPTETACGVPLVGLRPVLAPFEGCGFRMDCCERGSPCRRWWSPFSLQE
ILFATRRREVFVPL*
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mRNA from alignment at P-littoralis_Contig101:118959..121295+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig101.43.1 ID=mRNA_P-littoralis_Contig101.43.1|Name=mRNA_P-littoralis_Contig101.43.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2337bp|location=Sequence derived from alignment at P-littoralis_Contig101:118959..121295+ (Pylaiella littoralis U1_48)
TGCGGCGAGAACTGTTCGTTTGAGAAGGTCTTCGGCTCTGTCCGTGGGAT
GCTACCGGCCACCGCACCCGGCAGGAATACGCCGGTAAGCCAATCGTTGC
AACTGTGCTATCGTAAACTCTGTTGGTGTATTTTTACGATTCCGCTCGTT
TAAAGGCCACGAGGCTGGATTTGGTTGGTTGATTGAGCTGGGTTGATTTG
GTTGAGTTGGTTAAATGAAATTGGGTTTGTACAGGAGTGACGTTGCGCCA
AATACGAAACGGCTTGAATATGTTACGTTAGATTGAGTCAAGCGTGGTGT
GATTCTCTCTCTCGTCGCGTTCCGTCGTTGATCCACCCATTAGTTCACCC
GTCCGCTTGTCGGCTGGTGTTTGTTATAGTGATCCGTTCACGACGCACAT
CTGATCCGGAGCAAATAACACGGAGCTACGCACAAAGCTAGGTTTGTTTT
CTGGTGCTTTGTCATGGGAACAACTGTACTACCATATTGTTTGAAACGAA
GTATCATTCATCCGCAGCAGCCCTTTGTATCTGTCTTCGCAAGCACGGTA
CACAGATTGGCTCGCTCGCTTGTTGGCGCTCGATGCCAAGCGGGCGCCTA
TTTTTTTCAAGTTGTCTCCAGTTTTGTGCCTGATGGTATTCCCATTTTTT
TTTTTCCATTTTTTTTTTATTACATGTTTTTTTTCACTTTCATTCAATCA
TAAAATTCCATATGCATTCTTTGTTTTTCCTCTTTTGACTCATTTCTTGC
TGCTGCACCCTTGCCTCTTTTTGTGACCGCATTGGCCGTACTCTAGCTCT
TATTCGCTTTTTTTCAGCACCGCTGCCTGTTCGCCCCGCCGACCATCCCC
CTCCCCCTTTTTTTTTGTTGCTGGCGGACCGACCGGTACCGGGATTTGAT
TAGCACGGTCAAGATGCGTCAGCTCTGGGAGCGTCTGTGGACCTCTTCTT
GCTTCTTGCGAGGCTTTGCGGTCATCACCATGGGCTTCAGGTTTGTGCGG
AAGGGGCGGGTGGGTGGGTGGGTCGGTAGGCGTACGACTTCCACCGCTGC
CTGCTGCTGTTGCTGTGGTCGTTTGCTAAAGTAGACTTGAGAGTGAACTG
AAACGTGTTTTTTTCGGTCATCGCCGTGGCCTTCAGGTGTGTACGGCATC
GGGTGAGGTCGTGAGAGGGTACCGCCGCTCCTGCTTGCTTGTGTTTGGTT
GTTTACTAGGCAACCGGTAAGTTGGCCAAAAAACATTTTCTTCAATCATC
ACCGTGGTCTTCACGTGAGGCGGTGAGAGGGTTACCACCGCTGCTGCCTA
CCTTGCTGCTGCATGGTTGTTGTTTGCCAGACCCAAGGCGAAGTGAAAAT
GGTTTTGCGGTCATCACCGTGGTACTCGGGTAAAGCGGTGGTTTGGCGTA
CCCTGCTGCCTCCCACTTGCACGTGGCAGCCGCCGCCATCGCCACCGCAC
CAACGTCAACCACACATCAAACTTACCAATCAAAGCAAAGCAAAGCAAAG
CAAAGCAAATAAATGGACGCTCACATGTATTCAATGCGCACACACGTTTT
GTGAACACACACACAGAGATGTTGTGAGTGAGATCAAGATCGATCGTGTA
AATATCACGGAGCGGGCGCCCTTCCCAGCGTGGCCATCAGACATTGTGTT
CGCTGTTGCCGAGGTGCTAGTAACTTAAAATGAACCCCACCGCGTAGCGC
GAATAAGAACGGTGTCAGCGGCAACTGTTGTAATTCGTGGCTTTGTGTAG
ACCGCCTACCTGTTCGATAGAATCAATTTATTGGGAATGATTATTCCATG
TTCTGGGAGGCATATTCGTACAACAGGATTTTGTCGCGAGGCAGAGCGTT
TCGCTGAACCGTTTCTGCCCCTGCCTCCGAACCCCTGCCTCCGAACTGGA
TCCAGAATCTACCACGGTTGGACCGGTACGCAACGGCGCTTATCCGAGAA
CGGCTGCGCCACATTTGGGAAGCGTGGTTTGTCGAAACCGACGGAAACTG
CTTGTGGCGTGCCCCTTGTGGGATTGCGACCAGTTTTGGCCCCATTTGAA
GGTTGTGGTTTTAGGATGGACTGCTGTGAACGCGGGAGCCCTTGTAGAAG
ATGGTGGAGTCCTTTTTCGCTCCAAGAAATTCTATTCGCAACCCGTCGTC
GAGAAGTATTCGTGCCCCTCTGACTCAAGTGGGCTTACTTGTGATGCGGT
CGACAACGCCCTCATGATGGTCCTGGAGTCCATCCTGGAATTTTGCCCAA
ATGAAAAGTGGGGCGGAGACCTTACCGCGCTCTGGACATCTGAAGCGCTA
GGCATCACGGTGAAATTGGTTGTTCCTACTGACATGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig101:118959..121295+

>mRNA_P-littoralis_Contig101.43.1 ID=mRNA_P-littoralis_Contig101.43.1|Name=mRNA_P-littoralis_Contig101.43.1|organism=Pylaiella littoralis U1_48|type=CDS|length=345bp|location=Sequence derived from alignment at P-littoralis_Contig101:118959..121295+ (Pylaiella littoralis U1_48)
ATGCGTCAGCTCTGGGAGCGTCTGTGGACCTCTTCTTGCTTCTTGCGAGG
CTTTGCGGTCATCACCATGGGCTTCAGAATCTACCACGGTTGGACCGGTA
CGCAACGGCGCTTATCCGAGAACGGCTGCGCCACATTTGGGAAGCGTGGT
TTGTCGAAACCGACGGAAACTGCTTGTGGCGTGCCCCTTGTGGGATTGCG
ACCAGTTTTGGCCCCATTTGAAGGTTGTGGTTTTAGGATGGACTGCTGTG
AACGCGGGAGCCCTTGTAGAAGATGGTGGAGTCCTTTTTCGCTCCAAGAA
ATTCTATTCGCAACCCGTCGTCGAGAAGTATTCGTGCCCCTCTGA
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