Homology
BLAST of mRNA_P-littoralis_Contig101.18.1 vs. uniprot
Match:
D8LR57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR57_ECTSI)
HSP 1 Score: 128 bits (321), Expect = 2.380e-28
Identity = 72/96 (75.00%), Postives = 79/96 (82.29%), Query Frame = 3
Query: 1107 STPAVVPTASEVSRILTKLGPKGVSELTLYKNLTFDELVRVCRYTGGVDLSKRLPKATMAERLNALCVEQGALAKELPIAPGRAPAGR-RGERGEG 1391
S VVPTASEV+RIL KLGPKG SEL LYKNLTFDELV+VCRYTG +DLSKRLPKATMAERL++LC E+GALA EL A GRA G+ GERG G
Sbjct: 188 SAAVVVPTASEVTRILAKLGPKGASELALYKNLTFDELVKVCRYTGVMDLSKRLPKATMAERLSSLCSERGALAVELRNA-GRASGGKAEGERGIG 282
BLAST of mRNA_P-littoralis_Contig101.18.1 vs. uniprot
Match:
A0A6H5KLD2_9PHAE (Protein CLP1 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLD2_9PHAE)
HSP 1 Score: 117 bits (294), Expect = 2.110e-24
Identity = 63/93 (67.74%), Postives = 72/93 (77.42%), Query Frame = 3
Query: 1107 STPAVVPTASEVSRILTKLGPKGVSELTLYKNLTFDELVRVCRYTGGVDLSKRLPKATMAERLNALCVEQGALAKELP---IAPGRAPAGRRG 1376
S VVPT++EV+ IL KLGPKG SEL LYKNL FDELV++CRYTG VDLSKRLPKATMAERL++LC E+GALA EL +A GR RG
Sbjct: 895 SAAEVVPTSTEVTSILIKLGPKGASELALYKNLAFDELVKLCRYTGSVDLSKRLPKATMAERLSSLCSERGALAVELRNAGLAKGRKAESERG 987
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig101.18.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 2.38e-28 / Id = 75.00 Expect = 2.11e-24 / Id = 67.74 Sequence D8LR57_ECTSI A0A6H5KLD2_9PHAE
Match Name E-value Identity Description
D8LR57_ECTSI 2.380e-28 75.00 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] A0A6H5KLD2_9PHAE 2.110e-24 67.74 Protein CLP1 homolog n=1 Tax=Ectocarpus sp. CCAP 1... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Model size 1393 Hectar predicted targeting category other localisation Exons 2 Cds size 999
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789348.534678-UTR-P-littoralis_Contig101:79634..79757 1680789348.534678-UTR-P-littoralis_Contig101:79634..79757 Pylaiella littoralis U1_48 UTR P-littoralis_Contig101 79635..79757 + 1680789348.563255-UTR-P-littoralis_Contig101:80826..81097 1680789348.563255-UTR-P-littoralis_Contig101:80826..81097 Pylaiella littoralis U1_48 UTR P-littoralis_Contig101 80827..81097 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789348.5458436-CDS-P-littoralis_Contig101:79757..80684 1680789348.5458436-CDS-P-littoralis_Contig101:79757..80684 Pylaiella littoralis U1_48 CDS P-littoralis_Contig101 79758..80684 + 1680789348.553798-CDS-P-littoralis_Contig101:80754..80826 1680789348.553798-CDS-P-littoralis_Contig101:80754..80826 Pylaiella littoralis U1_48 CDS P-littoralis_Contig101 80755..80826 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig101.18.1
>prot_P-littoralis_Contig101.18.1 ID=prot_P-littoralis_Contig101.18.1|Name=mRNA_P-littoralis_Contig101.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=333bp
MISDIATQEDSLLLESQPQWPQQQQQQQQQRETQHETHQEGMMAGCSPTT back to top mRNA from alignment at P-littoralis_Contig101:79635..81097+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig101.18.1 ID=mRNA_P-littoralis_Contig101.18.1|Name=mRNA_P-littoralis_Contig101.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1463bp|location=Sequence derived from alignment at P-littoralis_Contig101:79635..81097+ (Pylaiella littoralis U1_48)GGAGCACCATCGTATTCCTCCTCAAGACGAACAGCTGCGTCAGCATCAAC
GAGTCAGAAAAAGCCGAGACAGCAACGGCCGCTCGGAGGGCTGGAGCAGC
CATCGCGCGACTGCCTGTTGGAC ATGATCAGCGACATCGCCACCCAGGAG
GACTCTCTTCTCCTCGAGTCACAGCCGCAGTGGCCACAGCAGCAGCAGCA
GCAGCAGCAGCAGCGGGAGACCCAGCACGAAACACACCAGGAAGGGATGA
TGGCCGGGTGTTCTCCTACGACAGGTGGTGCTAGAAACAGCAACGACGGC
GGTGGCGTTGTCCAAGGGGGCCACCCCTCGTCTCCTAGAAATGAGACGGC
GTCTTCTCCGTCAACCGCTTTCCCACCATCGCTGCCGCTGTTGCCGCTCT
CCCCACCCAGACGGCCGCCCACTGCTGCGACTGCTTCGGTGACTACAGGT
GATGATGACGGGGCCGCAGCATCACCTAGCGGGGGAGGGAAAGATGGTGA
CAACGCCCACGACGACCATCTTTGGCATCAAGTTCTGCACCGCCAGGGCG
CGGCCTCAGCACCTCCGCCAGCTTCCCCGTCCTCCTTCTCCACGTCGTCA
TCGTCCTCCACCGAAGCAGACCCATCGTCGCCAAACGCGTCAGACAGAGA
GCAAGGAGCAGCATCTACCACAGTGTCGGCCACAGCTGTGCTACCCTCCC
CAAGCCCTCATCGCGAGAATGCAAGGGCAACATCGGCAACCAGCGGCAGG
TCGGATGTGCTGGGAGCGTCAGGGGTGGGGGCAACGGCGCAAGCGCCCGG
GGGGGAGTTGGAAGCGGCGGCCATGGTGTCTTTCGCGCAGGTTGCTCCGC
TAGCGTGCGCAGGGGGTGACGGTGGCCGCAGTGGCGGCAGTACGGACAGC
GTCAACGGATCGAACCCGAAGCGACAACAGAGTATCGACAACAGTGGCGG
CAGCATCAGCAGTAGCAACAACATCAGCAACAGCGGCAACAACGACACTG
ACAACAAAAGAAGCAGCAGCAGCAACAACAACAACAACAGCAACAACAAC
AACAACAAGGGTGGCTCGAAAGGGTTTCCATCTTTATCTTCGTCTTCAGG
CGGCGGCGGCCTTATTTGCGGTGGTAGTTCGTTGGCGACACAACCACGGA
CTTCCTCTTCGTCTTCCGCCACCACCTCCACACCCGCAGTAG TACCCACC
GCCTCCGAGGTTTCACGCATCCTTACCAAGCTAGGGCCAAAGGGTGTGTC
CGAGCTGACGCTCTACAAGAACCTCACCTTCGACGAGCTGGTGAGGGTGT
GCCGCTACACAGGGGGCGTCGACCTTTCCAAACGCCTTCCCAAGGCCACA
ATGGCGGAGCGCCTCAACGCTCTCTGCGTGGAGCAGGGGGCCTTGGCCAA
GGAATTACCGATCGCGCCAGGGAGAGCACCGGCCGGAAGGAGAGGGGAAC
GAGGAGAAGGAGA back to top Coding sequence (CDS) from alignment at P-littoralis_Contig101:79635..81097+
>mRNA_P-littoralis_Contig101.18.1 ID=mRNA_P-littoralis_Contig101.18.1|Name=mRNA_P-littoralis_Contig101.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=999bp|location=Sequence derived from alignment at P-littoralis_Contig101:79635..81097+ (Pylaiella littoralis U1_48) back to top