mRNA_P-littoralis_Contig101.112.1 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig101.112.1 vs. uniprot
Match: D8LR42_ECTSI (Ribosomal protein L3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR42_ECTSI) HSP 1 Score: 414 bits (1065), Expect = 5.600e-141 Identity = 232/322 (72.05%), Postives = 251/322 (77.95%), Query Frame = 1 Query: 250 ASTLRVTRCLINRQLRFRGSFSVTVAAAXXXXXXXXXXTGSSRGTAFY--AARRALS--ARPAESDWESXXXXXXXXXXX-------------VEGAAS--EGFEAGEWSPTVLRTGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVLQVKTMATDGYTSLQLGVGERKWKNVNKATAERFRQAGVNPKRKLMEFRVSPEALLPVGFRLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQGASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMGSDRVTVQNLKILKIDPSRELLFVKGHVPGQNGGFLRVTDAVK 1158
+STLRVTRC I+RQL R S VAA G+S + AR+ALS ARPA + + XXXXXX V G + EA EW+P+V R+GALAMKVGSMAIFDSWGVRHPVTVLQLDECEV+QVKT TDGYTSLQLGVGERK KNVNK AERFR+AGVNPKRKLMEFRVS EALLPVGF+LRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQ ASHGVSKT RHIGSTGQCQDPGRVFKGKKMPGRMG+DRVTVQNLKILK+DP RELLFV+GHVPGQNGGF+RVTDA+K
Sbjct: 3 SSTLRVTRCFISRQLNGRRGLSAAVAANASIPSGCGGAAGASAALQGFPPGARQALSSSARPATNTADGSSDPSXXXXXXXXXXXXXXXXXXAVFGGVGGPQSLEAREWNPSVRRSGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVVQVKTTETDGYTSLQLGVGERKTKNVNKPDAERFRRAGVNPKRKLMEFRVSAEALLPVGFQLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQRASHGVSKTPRHIGSTGQCQDPGRVFKGKKMPGRMGTDRVTVQNLKILKMDPVRELLFVRGHVPGQNGGFVRVTDAIK 324
BLAST of mRNA_P-littoralis_Contig101.112.1 vs. uniprot
Match: A0A835Z1M4_9STRA (Translation protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1M4_9STRA) HSP 1 Score: 288 bits (738), Expect = 2.490e-93 Identity = 143/195 (73.33%), Postives = 160/195 (82.05%), Query Frame = 1 Query: 574 IFDSWGVRHPVTVLQLDECEVLQVKTMATDGYTSLQLGVGERKWKNVNKATAERFRQAGVNPKRKLMEFRVSPEALLPVGFRLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQGASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMGSDRVTVQNLKILKIDPSRELLFVKGHVPGQNGGFLRVTDAVK 1158
I+D+WG RH VTVL LD C+V QV T GYT++Q+G GE K KNV K+ A F +AGV PKR+L EFRV+P+ALLPVGFRLRAQHFV GQ +DV GT+KGKGFQGGMKRW FKGQ ASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMG VTVQ L+ILK+D R+LLFVKGHVPG G FLRV DA+K
Sbjct: 4 IWDAWGERHAVTVLHLDACQVTQVCREETHGYTAVQVGAGEAKPKNVRKSLAGLFAKAGVPPKRRLGEFRVTPDALLPVGFRLRAQHFVPGQLIDVRGTTKGKGFQGGMKRWNFKGQRASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMGGTAVTVQCLRILKLDTQRDLLFVKGHVPGPRGAFLRVQDALK 198
BLAST of mRNA_P-littoralis_Contig101.112.1 vs. uniprot
Match: A0A7S2CDJ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CDJ5_9STRA) HSP 1 Score: 285 bits (730), Expect = 7.640e-92 Identity = 141/208 (67.79%), Postives = 164/208 (78.85%), Query Frame = 1 Query: 535 RTGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVLQVKTMATDGYTSLQLGVGERKWKNVNKATAERFRQAGVNPKRKLMEFRVSPEALLPVGFRLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQGASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMGSDRVTVQNLKILKIDPSRELLFVKGHVPGQNGGFLRVTDAVK 1158
RTGAL +K G +A FD WG RH +TV+QLD C+V+QVK AT+GYT+LQLG+ + K KNV K + +AGV PKRKL EFRV+ + +LPVG ++ A HFV GQ VDVCGTSKGKGFQG MKR F GQ A+HGVSKTHR IGSTG CQDPGRVFKGKKMPGRMGSDRVTVQNL + KI+P R LLFVKGHVPG GGF+R++ A K
Sbjct: 51 RTGALGIKAGMIAEFDRWGTRHELTVIQLDNCQVVQVKEEATNGYTALQLGICDAKEKNVTKPLRVHYSKAGVKPKRKLGEFRVAEDGILPVGTQIHATHFVPGQLVDVCGTSKGKGFQGAMKRHNFAGQRATHGVSKTHRAIGSTGMCQDPGRVFKGKKMPGRMGSDRVTVQNLWVYKINPQRNLLFVKGHVPGVAGGFVRISGAGK 258
BLAST of mRNA_P-littoralis_Contig101.112.1 vs. uniprot
Match: A0A7S2BM36_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BM36_9STRA) HSP 1 Score: 279 bits (713), Expect = 4.340e-89 Identity = 139/208 (66.83%), Postives = 160/208 (76.92%), Query Frame = 1 Query: 535 RTGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVLQVKTMATDGYTSLQLGVGERKWKNVNKATAERFRQAGVNPKRKLMEFRVSPEALLPVGFRLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQGASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMGSDRVTVQNLKILKIDPSRELLFVKGHVPGQNGGFLRVTDAVK 1158
RTGAL +K G +A FD WG R +TV+QLD CEV+QVKT DGY +LQLGV K KN + F ++GV KRKL EFRV+ +ALLP G ++ A HFV GQ +DVCG SKGKGFQG MKR F GQ ASHGVSKTHR +GSTGQCQ+PGRVFKGKKMPGRMG+DRVT+QNL + KID R LL+VKGHVPGQNGGFLR+ DAVK
Sbjct: 24 RTGALGIKAGMLAEFDHWGTRQELTVIQLDACEVVQVKTTKNDGYAALQLGVCAGKEKNAPQTLKNHFAKSGVEVKRKLGEFRVADDALLPPGTKIGAAHFVPGQLLDVCGVSKGKGFQGAMKRHNFSGQRASHGVSKTHRAMGSTGQCQNPGRVFKGKKMPGRMGNDRVTIQNLWLYKIDVDRNLLYVKGHVPGQNGGFLRIQDAVK 231
BLAST of mRNA_P-littoralis_Contig101.112.1 vs. uniprot
Match: A0A8K1CEF8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CEF8_PYTOL) HSP 1 Score: 277 bits (709), Expect = 4.220e-88 Identity = 138/215 (64.19%), Postives = 163/215 (75.81%), Query Frame = 1 Query: 514 EWSPTVLRTGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVLQVKTMATDGYTSLQLGVGERKWKNVNKATAERFRQAGVNPKRKLMEFRVSPEALLPVGFRLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQGASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMGSDRVTVQNLKILKIDPSRELLFVKGHVPGQNGGFLRVTDAVK 1158
EW+P RTG LA+K+G M ++D +G RH TVLQ++EC+V QVKT G++SLQLGVG RK +NV K +AGV PKR+L EFRVS +ALLP+G L AQHF GQ VDVCGTSKGKGFQG MKR F GQ ASHG SKT RH+GSTGQCQDPG+VFKGKKMPGR+G +RVT NL ++K+D R LL+VKG VPG NGG +RVTDA K
Sbjct: 49 EWTPEKKRTGLLAVKIGMMPVWDHYGYRHACTVLQVEECQVTQVKTTERHGFSSLQLGVGIRKARNVTKPVMGHLAKAGVAPKRQLQEFRVSDDALLPLGTTLSAQHFTPGQYVDVCGTSKGKGFQGVMKRHNFAGQPASHGNSKTERHMGSTGQCQDPGKVFKGKKMPGRLGGERVTRDNLWVVKVDTQRNLLYVKGSVPGNNGGIVRVTDARK 263
BLAST of mRNA_P-littoralis_Contig101.112.1 vs. uniprot
Match: A0A485LGU6_9STRA (Aste57867_21176 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LGU6_9STRA) HSP 1 Score: 270 bits (690), Expect = 2.090e-85 Identity = 138/218 (63.30%), Postives = 161/218 (73.85%), Query Frame = 1 Query: 505 EAGEWSPTVLRTGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVLQVKTMATDGYTSLQLGVGERKWKNVNKATAERFRQAGVNPKRKLMEFRVSPEALLPVGFRLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQGASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMGSDRVTVQNLKILKIDPSRELLFVKGHVPGQNGGFLRVTDAVK 1158
E+ +W+P RTG LA+K+GSM I+D WGV PVTVLQ++EC+V QVKT G++SLQLGVG R+ KN+ K +AGV KR+L EFRVS +ALLP G L A HF GQ +DVCGTSKGKGFQG MKR F GQ ASHG S THR +GS GQCQDPG+V+KGKKMPGRMG RVT NL ILK+DP R LL+VKG VPG GG +RVTDA K
Sbjct: 31 ESKDWTPESKRTGLLAVKMGSMHIYDDWGVAQPVTVLQVEECQVTQVKTADVHGFSSLQLGVGLRREKNITKPVLGHLAKAGVPAKRELHEFRVSDDALLPAGTTLNALHFSPGQYIDVCGTSKGKGFQGVMKRHNFGGQPASHGNSLTHRAMGSAGQCQDPGKVWKGKKMPGRMGGKRVTRDNLWILKVDPERNLLYVKGSVPGAAGGVIRVTDARK 248
BLAST of mRNA_P-littoralis_Contig101.112.1 vs. uniprot
Match: A0A3M6VVY4_9STRA (Uncharacterized protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6VVY4_9STRA) HSP 1 Score: 270 bits (690), Expect = 2.380e-85 Identity = 137/214 (64.02%), Postives = 159/214 (74.30%), Query Frame = 1 Query: 517 WSPTVLRTGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVLQVKTMATDGYTSLQLGVGERKWKNVNKATAERFRQAGVNPKRKLMEFRVSPEALLPVGFRLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQGASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMGSDRVTVQNLKILKIDPSRELLFVKGHVPGQNGGFLRVTDAVK 1158
WS RTG LA+K+G M ++D +G RH TVLQ++EC+V Q+KT G+ +LQLGVG RK KNV K +AGV KR+L EFRVS +ALLP+G +L A HF GQ VDVCGTSKGKGFQG MKR F GQ ASHG SKTHRH+GSTGQCQDPG+VFKGKKMPGRMG +RVT NL I KID R L++VKG VPG NGG +RVTDA K
Sbjct: 41 WSSEKKRTGLLAVKIGMMPVWDHFGYRHNCTVLQVEECQVTQIKTADRHGFNALQLGVGLRKPKNVTKPVLGHLAKAGVPAKRQLQEFRVSEDALLPLGMKLSALHFTPGQYVDVCGTSKGKGFQGVMKRHNFAGQPASHGNSKTHRHMGSTGQCQDPGKVFKGKKMPGRMGGNRVTRDNLWIAKIDVERNLIYVKGSVPGNNGGIVRVTDARK 254
BLAST of mRNA_P-littoralis_Contig101.112.1 vs. uniprot
Match: A0A1V9ZYU3_9STRA (50S ribosomal protein L3-2 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZYU3_9STRA) HSP 1 Score: 269 bits (688), Expect = 3.220e-85 Identity = 133/223 (59.64%), Postives = 162/223 (72.65%), Query Frame = 1 Query: 490 ASEGFEAGEWSPTVLRTGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVLQVKTMATDGYTSLQLGVGERKWKNVNKATAERFRQAGVNPKRKLMEFRVSPEALLPVGFRLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQGASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMGSDRVTVQNLKILKIDPSRELLFVKGHVPGQNGGFLRVTDAVK 1158
+S E +W+P RTG LA+K+G M ++D WG+ HP TVLQ++EC+V Q+K T G++++QLG G RK KN+ K +AGV KR+L EFRVS +AL+P G +L A HF GQ VDVCGTSKGKGFQG MKR F GQ ASHG SKT RH+GS+GQCQDPG+V+KGKKMPGRMG RVT NL + K+DP R LLFVKG VPG GG +RVTDA K
Sbjct: 19 SSLALEPKQWTPESKRTGLLAVKMGMMHVYDDWGLAHPCTVLQVEECQVTQIKDKETHGFSAIQLGAGLRKEKNLTKPVLGHLAKAGVPAKRELQEFRVSDDALIPAGTKLNALHFAPGQYVDVCGTSKGKGFQGVMKRHNFAGQPASHGNSKTERHMGSSGQCQDPGKVWKGKKMPGRMGGKRVTRDNLWVFKVDPERNLLFVKGTVPGAPGGIVRVTDARK 241
BLAST of mRNA_P-littoralis_Contig101.112.1 vs. uniprot
Match: A0A662XEF5_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XEF5_9STRA) HSP 1 Score: 270 bits (689), Expect = 3.830e-85 Identity = 140/224 (62.50%), Postives = 163/224 (72.77%), Query Frame = 1 Query: 487 AASEGFEAGEWSPTVLRTGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVLQVKTMATDGYTSLQLGVGERKWKNVNKATAERFRQAGVNPKRKLMEFRVSPEALLPVGFRLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQGASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMGSDRVTVQNLKILKIDPSRELLFVKGHVPGQNGGFLRVTDAVK 1158
A +E W+P RTG LA+K+G M ++D +G RH TVLQ++EC+V QVKT G+T+LQLGVG RK KN+ K +AGV KR+L EFRVS +ALLP+G L A HF AGQ VDVCGTSKGKGFQG MK F GQ ASHG SKTHRH+GSTGQCQDPG+V+KGKKMPGRMG +RVT NL I KID R LL+VKG VPG NGG +RVTDA K
Sbjct: 35 AVAEAASQVAWTPEKKRTGLLAVKIGMMPVWDHFGYRHNCTVLQVEECQVTQVKTADRHGFTALQLGVGVRKSKNMTKPVLGHLEKAGVPAKRQLQEFRVSEDALLPLGTTLSALHFNAGQYVDVCGTSKGKGFQGVMKLHNFAGQPASHGNSKTHRHMGSTGQCQDPGKVWKGKKMPGRMGGNRVTRDNLWIAKIDVERNLLYVKGSVPGNNGGIVRVTDARK 258
BLAST of mRNA_P-littoralis_Contig101.112.1 vs. uniprot
Match: A0A067BQA7_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BQA7_SAPPC) HSP 1 Score: 269 bits (687), Expect = 4.420e-85 Identity = 136/224 (60.71%), Postives = 160/224 (71.43%), Query Frame = 1 Query: 487 AASEGFEAGEWSPTVLRTGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVLQVKTMATDGYTSLQLGVGERKWKNVNKATAERFRQAGVNPKRKLMEFRVSPEALLPVGFRLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQGASHGVSKTHRHIGSTGQCQDPGRVFKGKKMPGRMGSDRVTVQNLKILKIDPSRELLFVKGHVPGQNGGFLRVTDAVK 1158
A S EA W+P RTG LA K+G +++FD WG+ H TVLQ++EC+V QVK T G+TSLQ+G G RK KNV K +AGV KR+L EFRV+ +AL+P G L A HF GQ VDVCGTSKGKGFQG MKR F GQ ASHG SKT RH+GS+GQCQDPG+V+KGKKMPGRMG RVT NL + K+DP R LL+VKG VPG GG +RVTDA K
Sbjct: 18 AMSTALEAKPWTPESKRTGLLATKMGMISVFDDWGLSHACTVLQVEECQVTQVKDKETHGFTSLQIGAGLRKAKNVTKPVLGHLAKAGVPAKRELAEFRVTDDALIPAGTTLNALHFAPGQYVDVCGTSKGKGFQGVMKRHNFAGQPASHGNSKTERHMGSSGQCQDPGKVWKGKKMPGRMGGKRVTRDNLWVFKVDPERNLLYVKGTVPGAPGGIVRVTDARK 241 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig101.112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig101.112.1 >prot_P-littoralis_Contig101.112.1 ID=prot_P-littoralis_Contig101.112.1|Name=mRNA_P-littoralis_Contig101.112.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=387bp GSRIAGTSSNAIQTCNPQNQNLFGGGPPTGAKAQTAAVRQQVNCAPVALRback to top mRNA from alignment at P-littoralis_Contig101:400131..409809+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig101.112.1 ID=mRNA_P-littoralis_Contig101.112.1|Name=mRNA_P-littoralis_Contig101.112.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=9679bp|location=Sequence derived from alignment at P-littoralis_Contig101:400131..409809+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig101:400131..409809+ >mRNA_P-littoralis_Contig101.112.1 ID=mRNA_P-littoralis_Contig101.112.1|Name=mRNA_P-littoralis_Contig101.112.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1161bp|location=Sequence derived from alignment at P-littoralis_Contig101:400131..409809+ (Pylaiella littoralis U1_48)back to top |