mRNA_P-littoralis_Contig1009.8.5 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1009.8.5 vs. uniprot
Match: D7G976_ECTSI (Fibronectin type III domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G976_ECTSI) HSP 1 Score: 310 bits (793), Expect = 3.280e-92 Identity = 156/262 (59.54%), Postives = 201/262 (76.72%), Query Frame = 3 Query: 303 ALLVSFISCAVLRGCTSDLGAKAESCDFATVMSLRSEWDAHDEPCEKKLPFELWTLMKAEGSAQNPDAQHVRGDCIQSRDVDLVELITPKGYVISDGVAAAPGDVVGETEHAITYEGATAATFEAFCDDDGITRVVRIDVALEAY--RPSSKKYLRRLQATTSQAGQAHQVAELIAGLSDIGCTRTTGEDQTVCVVSNSFDANGAAASLQASGDLPVVEVVKDIPAGTKATDEGSAMTELIYDIARGASYKFNSGFTGMQAL 1082 AL ++ S AV+ G S ++ +C+F+T +SLR+EWDA DEPC+KKL FELWT M+AEGSAQ+PDAQ VR C++ ++ +VELITPKGY +SD V+AAPG VV ET+HA +Y+GATA TFEAFC+D+ I RV R+ LEAY S + R LQ+TTS+AGQAHQVAELI GL ++GCTRTTGEDQ +CV+S+SF+ G AA+L+ SGDLP VEVVK+IP G + DEGSAM EL YDIA GA++KF++ + G Q+L Sbjct: 6 ALFLALTSGAVI-GRASGESVESSACEFSTFLSLRAEWDADDEPCQKKLSFELWTFMQAEGSAQSPDAQRVRASCVEHEEIGVVELITPKGYTMSDSVSAAPGSVVSETDHASSYQGATAMTFEAFCEDENIERVTRVASVLEAYPRNKRSGRTRRHLQSTTSEAGQAHQVAELIDGLKNLGCTRTTGEDQKLCVLSDSFNYFGDAATLKDSGDLPEVEVVKEIPEGYEGVDEGSAMIELAYDIASGATFKFSTAYGGEQSL 266
BLAST of mRNA_P-littoralis_Contig1009.8.5 vs. uniprot
Match: A0A6H5KTN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTN7_9PHAE) HSP 1 Score: 246 bits (629), Expect = 4.570e-71 Identity = 121/190 (63.68%), Postives = 152/190 (80.00%), Query Frame = 3 Query: 402 LRSEWDAHDEPCEKKLPFELWTLMKAEGSAQNPDAQHVRGDCIQSRDVDLVELITPKGYVISDGVAAAPGDVVGETEHAITYEGATAATFEAFCDDDGITRVVRIDVALEAYRPSSK---KYLRRLQATTSQAGQAHQVAELIAGLSDIGCTRTTGEDQTVCVVSNSFDANGAAASLQASGDLPVVEVVK 962 +R++WDA DEPC+KKL FELWT MKAEGSA NPDAQ VR C++ ++ LVELITPKGY +SD V+AAPG VV ET+HA +Y+GATA TFEAFC+D+ I RV R+ +EAY P +K + R LQ++TSQAGQAHQVAELI GL ++GCTRTTGED+ +CV+S+SF+ G AA+L+ SGDLP VEV+K Sbjct: 15 IRADWDADDEPCQKKLSFELWTFMKAEGSAHNPDAQRVRASCVEHEEIGLVELITPKGYTMSDSVSAAPGSVVSETDHASSYQGATAITFEAFCEDENIERVTRVAPVVEAY-PFNKHGGQTRRHLQSSTSQAGQAHQVAELIDGLKNLGCTRTTGEDKKLCVLSDSFNYLGKAATLKDSGDLPEVEVIK 203
BLAST of mRNA_P-littoralis_Contig1009.8.5 vs. uniprot
Match: D7G975_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G975_ECTSI) HSP 1 Score: 233 bits (595), Expect = 6.670e-62 Identity = 124/177 (70.06%), Postives = 145/177 (81.92%), Query Frame = 3 Query: 1674 FLMASTEGITGKSDGSMRGHACASNCVAVAAMAWTKGGGVDGAFEDPESSSVDNFSSRGPCVV---SG-EVRNKPTTCAADGVSVSTPGFDNFFGTSASAAVAAAIATIVRAACFPKVVTYTEMMEMLTNYDYTVDVTSDADGAAETWGPEAGYGIISASKMLAWVEANCSEACAAA 2192 FL+ S+ GI G +DG++ GHACA NCVAVAA+ W +G G G+FEDPE+S V+ FSS GPC+V SG E R KPTTCAADG++ ST GF F GTSASA VAAAIATIVRAACFP+VV Y E+MEMLTNY+YTVD T+DADGAAETWG EAG+GIISA++MLAWVE NCSEAC+ A Sbjct: 88 FLLLSSGGIGGHTDGNIYGHACAKNCVAVAAINWQEGDGPGGSFEDPETSRVEYFSSTGPCIVDPGSGKETREKPTTCAADGLATSTTGFSEFLGTSASAPVAAAIATIVRAACFPRVVEYGEVMEMLTNYEYTVDYTNDADGAAETWGNEAGHGIISAAQMLAWVEENCSEACSGA 264
BLAST of mRNA_P-littoralis_Contig1009.8.5 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE) HSP 1 Score: 221 bits (564), Expect = 1.690e-59 Identity = 129/261 (49.43%), Postives = 156/261 (59.77%), Query Frame = 3 Query: 2250 QTCSDGTEGIEGSGPVCCPIACNQCGGTGCSQSGAAAGLTSSDCCSGEVQTSGVYCD-TNQAPCIIGTSPAAPPVTDPXXXXXXXXXXXXXXXEPVVPSDPPAGVTIACNQCGGTGCSQSGAAAGLTSSDCCSGEVQTSGVYCD-TNQAPCIIGTSPAGPPVTDPXXXXXXXXXXXXXXAEPVVPSDPPAGQTCSDGTEGIEGSGPVCCPIACTQCGGTGCSQSGAAAGLTSSDCCTGDIQTSGVYCD-TNQAPCIIGSAP 3023 +TCS+G EGI+ +G VCCP+AC QCGGTGC+ SGAA GL S CC G V+ S YCD TN+APCIIG+ P P + + + + C QCGGTGC+ SGAAAGL S CC G ++ SG YCD TN APCIIG+SPA PS P+ +TCS+G EGI+G+G VCCP+ C QCGG GC+ SGAAAGL + CC G I+ S YCD TN+APCIIGS P Sbjct: 191 RTCSNGLEGIDANGVVCCPLACGQCGGTGCNTSGAAFGLDGSSCCGGGVKASDEYCDETNEAPCIIGSRPTPSPTSANTCSNGLEG----------IDGNGVVCCPLGCGQCGGTGCNTSGAAAGLDGSSCCGGSIKASGKYCDETNDAPCIIGSSPA--------------------------PSPTPS-ETCSNGVEGIDGNGVVCCPLGCGQCGGAGCTTSGAAAGLGADSCCGGSIKASDEYCDETNEAPCIIGSRP 414
BLAST of mRNA_P-littoralis_Contig1009.8.5 vs. uniprot
Match: D7FIS5_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS5_ECTSI) HSP 1 Score: 204 bits (519), Expect = 9.500e-52 Identity = 147/263 (55.89%), Postives = 175/263 (66.54%), Query Frame = 3 Query: 2253 TCSDGTEGIEGSGPVCCPIACNQCGGTGCSQSGAAAGLTSSDCCSGEVQTSGVYCD-TNQAPCIIGTSPAAPPVTDPXXXXXXXXXXXXXXXEPVVPSDPPAGVT---IACNQCGGTGCSQSGAAAGLTSSDCCSGEVQTSGVYCD-TNQAPCIIGTSPAGPPVTDPXXXXXXXXXXXXXXAEPVVPSDPPAGQTCSDGTEGIEGSGPVCCPIACTQCGGTGCSQSGAAAGLTSSDCCTGDIQTSGVYCD-TNQAPCIIGSAP 3023 TCSDGTEG++G+G VCCP+ C QC G+GCS +GAA GLTSS CC G +++SG YCD T APCI G++P A XXXXXXXXXXX + GV + C QC G+GCS +GAA GLTSS CC G +++SG YCD T APCI G++P D XXXXXXXXXXX V TCSDG EG++G+G VCCP+ C QC G+GCS +GAA GLTSS CC G I++SG YCD T APCI GSAP Sbjct: 269 TCSDGTEGLDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGGIKSSGNYCDDTGVAPCIYGSAPDAGDDXXXXXXXXXXXXXXVGTCSDGIEGLDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGGIKSSGNYCDDTGVAPCIYGSAP------DAGDDXXXXXXXXXXXXXXVG--------TCSDGIEGLDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGRIKSSGNYCDDTGVAPCIYGSAP 517
BLAST of mRNA_P-littoralis_Contig1009.8.5 vs. uniprot
Match: D7G651_ECTSI (Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G651_ECTSI) HSP 1 Score: 204 bits (519), Expect = 8.750e-51 Identity = 120/261 (45.98%), Postives = 148/261 (56.70%), Query Frame = 3 Query: 2250 QTCSDGTEGIEGSGPVCCPIACNQCGGTGCSQSGAAAGLTSSDCCSGEVQTSGVYCD-TNQAPCIIGTSPAAPPVTDPXXXXXXXXXXXXXXXEPVVPSDPPAGVTIACNQCGGTGCSQSGAAAGLTSSDCCSGEVQTSGVYCD-TNQAPCIIGTSPAGPPVTDPXXXXXXXXXXXXXXAEPVVPSDPPAGQTCSDGTEGIEGSGPVCCPIACTQCGGTGCSQSGAAAGLTSSDCCTGDIQTSGVYCD-TNQAPCIIGSAP 3023 QTCSDGTEGI+G+G VCCPI C QC G GC +G+A GL S CC G V++ G+YCD TN+APCIIG+ P TD + + I C QC G GC +G+A GL S CC V++ G+YCD TN+APCIIG+ P + V QTCSDGTEGI+G+G VCCPI C QC G GC +G+A GL S CC +++ G+YCD TN+APCIIGS P Sbjct: 336 QTCSDGTEGIDGNGVVCCPIGCGQCAGDGCGTAGSANGLGSESCCGGGVKSLGLYCDDTNEAPCIIGSRPD----TDDVDSESADETQTCSDGTEGIDGNGVVCCPIGCGQCAGDGCGTAGSANGLGSESCCGNGVKSLGLYCDDTNEAPCIIGSRP---------------------DTDDVDSESADETQTCSDGTEGIDGNGVVCCPIGCGQCAGDGCGTAGSANGLGSESCCGNGVKSLGLYCDDTNEAPCIIGSRP 571
BLAST of mRNA_P-littoralis_Contig1009.8.5 vs. uniprot
Match: A0A6H5L8H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8H5_9PHAE) HSP 1 Score: 202 bits (514), Expect = 6.810e-50 Identity = 132/260 (50.77%), Postives = 159/260 (61.15%), Query Frame = 3 Query: 2253 TCSDGTEGIEGSGPVCCPIACNQCGGTGCSQSGAAAGLTSSDCCSGEVQTSGVYCD-TNQAPCIIGTSPAAPPVTDPXXXXXXXXXXXXXXXEPVVPSDPPAGVTIACNQCGGTGCSQSGAAAGLTSSDCCSGEVQTSGVYCD-TNQAPCIIGTSPAGPPVTDPXXXXXXXXXXXXXXAEPVVPSDPPAGQTCSDGTEGIEGSGPVCCPIACTQCGGTGCSQSGAAAGLTSSDCCTGDIQTSGVYCD-TNQAPCIIGSAP 3023 TCSDG EGI+G+G VCCP+ C QC G+GCS +GAA GLTSS CC G +++SG YCD T APCI G++P A XXXXX + + + C QC G+GCS +GAA GLTSS CC G +++SG YCD T APCI G++P XXXXX TCSDG EGI+G+G VCCP+ C QC G+GCS GAA GLTSS CC G+I++SG YCD T APCI GSAP Sbjct: 534 TCSDGIEGIDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGGIKSSGNYCDDTGVAPCIYGSAPDADXXXXXXXXXXVGTCNDGIEG---IDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGGIKSSGNYCDDTGVAPCIYGSAPDADDXXXXXXXXXVG--------------------TCSDGIEGIDGNGVVCCPLGCGQCVGSGCSTDGAANGLTSSSCCGGEIKSSGNYCDDTGVAPCIYGSAP 770
BLAST of mRNA_P-littoralis_Contig1009.8.5 vs. uniprot
Match: A0A6H5JYT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT7_9PHAE) HSP 1 Score: 199 bits (506), Expect = 7.800e-49 Identity = 147/263 (55.89%), Postives = 174/263 (66.16%), Query Frame = 3 Query: 2253 TCSDGTEGIEGSGPVCCPIACNQCGGTGCSQSGAAAGLTSSDCCSGEVQTSGVYCD-TNQAPCIIGTSPAAPPVTDPXXXXXXXXXXXXXXXEPVVPSDPPAGVT---IACNQCGGTGCSQSGAAAGLTSSDCCSGEVQTSGVYCD-TNQAPCIIGTSPAGPPVTDPXXXXXXXXXXXXXXAEPVVPSDPPAGQTCSDGTEGIEGSGPVCCPIACTQCGGTGCSQSGAAAGLTSSDCCTGDIQTSGVYCD-TNQAPCIIGSAP 3023 TCSDG EGI+G+G VCCP+ C QC G+GCS +GAA GLTSS CC G +++SG YCD T APCI G++P D XXXXXXXXXX + GV + C QC G+GCS +GAA GLTSS CC G +++SG YCD T APCI G++P XXXXXXXXXXXXXX + TCSDG EGI+G+G VCCP+ C QC G+GC +GAA GLTSS CC G I++SG YCD T APCI GSAP Sbjct: 469 TCSDGIEGIDGNGVVCCPLGCGQCAGSGCSIAGAANGLTSSSCCGGGIKSSGNYCDDTGVAPCIYGSAP------DTDXXXXXXXXXXIGTCSDGIEGIDGNGVVCCPLGCGQCAGSGCSIAGAANGLTSSSCCGGGIKSSGNYCDDTGVAPCIYGSAPNADDXXXXXXXXXXXXXXXXXXXDVG---------TCSDGIEGIDGNGVVCCPLGCGQCAGSGCGAAGAANGLTSSSCCGGGIKSSGNYCDDTGVAPCIYGSAP 716
BLAST of mRNA_P-littoralis_Contig1009.8.5 vs. uniprot
Match: A0A1G9R6Z2_ALLAB (Proprotein convertase P-domain-containing protein n=4 Tax=Allokutzneria TaxID=1137960 RepID=A0A1G9R6Z2_ALLAB) HSP 1 Score: 156 bits (394), Expect = 9.900e-35 Identity = 159/499 (31.86%), Postives = 233/499 (46.69%), Query Frame = 3 Query: 765 RLQATTSQAGQAHQVAELIAGLSDIGCTRTTGEDQTVCVVSNSFDANGAAASLQASGDLPVVEVVKDIPAGTKATDEGSAMTELIYDIARGASYKFNSGFTGMQALADDMGVLANNEACDVIIDDVIYFREPAFRDGVIAEAVDAAADGGTLCFSSAGN-----DWSGWRFDSNFECTAEFVATFPSGSTACGSTSVASHVFQPNLGAASVYRYL--WEFSPTRKKETIYVHWDEDVGTVEDVLIVVYVQDVGTEDLTFYSSADEVSGGNALEFIQFEPRLTSDGEVDESVVYFLQIIHFEAGLDDLAGQFLMASTEGITGKSDGSMRGHACASNCVAVAAM----AWT----KGGGVDGAFEDPE----SSSVDNFSSRGPCVV------------SGEVRNKPTTCAADGVSVSTPGFDNFFGTSASAAVAAAIATIVRAACFPKVVTYTEMMEMLTNYDYTVDVTSDADGAAETWGPEAGYGIISASKMLAWVEAN 2168 R A TSQ +AH + R +G +C +S+ D+ A+LQA+G+LP V+V+ G DEGSAM E+++D+A GA+ F + F G + AD++ L + CDVI+DDV+YF E F+DG+IA+AV+ G L FSSAGN D S ++ NF + + V F + +T + + P A+ L W + R ++ + G V V + Q+V T Y + +GG + ++F D+ +L + D +G +T G+T RGH+ A + +VAA AWT G + A P+ SS ++ FSS GP V +GEVR KP AADGV+ TPGF FFGTSA+A AAAIA +V + P + T +M + LT + D AA AG GI+ A K+LA+ A+ Sbjct: 201 RSAALTSQGDRAHAADTARSQF------RISGLGVKLCALSDGVDS---LAALQAAGELPEVDVLAGQEGGG---DEGSAMLEILHDVAPGAALGFATAFNGDASFADNIRALRFEKKCDVIVDDVLYFNESPFQDGIIAQAVNDVTKDGALFFSSAGNEGNVVDGSAGHWEGNFVDSGKSVGRFAGSAHDFDATPAGTQIVNPLSAASRGIPVLLWWNDALGRSTNDYDLYLLDGAGNV-----VGFSQNVQTGQADPYERVNPSTGGLNVAVVKFRG--------DDK---YLSLSALRGRFRD-SGDLKGYNTPGVT-------RGHSAAKDAFSVAATPAAGAWTGTQEPGDPANPAGPYPDTFSGSSKLERFSSDGPRRVFFNADGSPVASPAGEVRQKPDITAADGVTTKTPGFSPFFGTSAAAPHAAAIAGLVLSGN-PGMST-ADMRDALTR--------TALDIAAPGVDNRAGAGIVMADKVLAYTGAS 653
BLAST of mRNA_P-littoralis_Contig1009.8.5 vs. uniprot
Match: D7FQV4_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI) HSP 1 Score: 148 bits (373), Expect = 4.900e-33 Identity = 81/156 (51.92%), Postives = 97/156 (62.18%), Query Frame = 3 Query: 2250 QTCSDGTEGIEGSGPVCCPIACNQCGGTGCSQSGAAAGLTSSDCCSGEVQTSGVYCD-TNQAPCIIGTSPAAPPVTDPXXXXXXXXXXXXXXXEPVVPSDPPAGVTIACNQCGGTGCSQSGAAAGLTSSDCCSGEVQTSGVYCD-TNQAPCIIGTS 2711 +TCS+G EGIEG+G VCCP+ CNQCGGTGC+ SG+AAGL S CC G ++ SG YCD TN+APCIIG+ P E CNQCGGTGC+ SG+AAGL S CC G ++ SG YCD TN+APCIIG+S Sbjct: 470 ETCSNGLEGIEGNGVVCCPLECNQCGGTGCTMSGSAAGLGSESCCGGGIKASGAYCDDTNEAPCIIGSRPTTVETCSNGLEGIDGNGVVCCPLE--------------CNQCGGTGCTTSGSAAGLGSESCCGGGIKASGAYCDDTNEAPCIIGSS 611 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1009.8.5 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1009.8.5 >prot_P-littoralis_Contig1009.8.5 ID=prot_P-littoralis_Contig1009.8.5|Name=mRNA_P-littoralis_Contig1009.8.5|organism=Pylaiella littoralis U1_48|type=polypeptide|length=922bp MYRTQMASRTRALLVSFISCAVLRGCTSDLGAKAESCDFATVMSLRSEWDback to top mRNA from alignment at P-littoralis_Contig1009:10942..55651+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1009.8.5 ID=mRNA_P-littoralis_Contig1009.8.5|Name=mRNA_P-littoralis_Contig1009.8.5|organism=Pylaiella littoralis U1_48|type=mRNA|length=44710bp|location=Sequence derived from alignment at P-littoralis_Contig1009:10942..55651+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1009:10942..55651+ >mRNA_P-littoralis_Contig1009.8.5 ID=mRNA_P-littoralis_Contig1009.8.5|Name=mRNA_P-littoralis_Contig1009.8.5|organism=Pylaiella littoralis U1_48|type=CDS|length=2766bp|location=Sequence derived from alignment at P-littoralis_Contig1009:10942..55651+ (Pylaiella littoralis U1_48)back to top |