mRNA_P-littoralis_Contig1009.6.1 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1009.6.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE) HSP 1 Score: 193 bits (490), Expect = 7.050e-58 Identity = 85/123 (69.11%), Postives = 104/123 (84.55%), Query Frame = 1 Query: 1 QAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIEQTFGILVRRWGILWKPLELRLGNVAPLVESLVRLHNFC 369 QA+CDAQYRI AW MNCPGSQNDRTAF SGF KLL LP+G+++VGDAAY S+ V+VP+PGT +S SQDA NYY+SQCR+AIEQT+GILVRRWGILW+P+E+R+ +V ++VRLHNFC Sbjct: 211 QAVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILVRRWGILWRPMEVRIEKFEHVVNAVVRLHNFC 333
BLAST of mRNA_P-littoralis_Contig1009.6.1 vs. uniprot
Match: A0A6H5KNF2_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNF2_9PHAE) HSP 1 Score: 188 bits (478), Expect = 7.680e-58 Identity = 83/123 (67.48%), Postives = 104/123 (84.55%), Query Frame = 1 Query: 1 QAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIEQTFGILVRRWGILWKPLELRLGNVAPLVESLVRLHNFC 369 QA+CDAQYRI AWTM+CPGSQNDRTAF + F KLL LP+G+++VGDAAY S+ V+VP+PGT +S SQDA NYY+SQCR+AIEQT+GILVRRWGILW+P+E+R+ +V ++VRLHNFC Sbjct: 59 QAVCDAQYRIVAWTMSCPGSQNDRTAFNFAWFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILVRRWGILWRPMEVRIEKFEHVVNAVVRLHNFC 181
BLAST of mRNA_P-littoralis_Contig1009.6.1 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE) HSP 1 Score: 179 bits (454), Expect = 3.510e-53 Identity = 79/122 (64.75%), Postives = 101/122 (82.79%), Query Frame = 1 Query: 1 QAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIEQTFGILVRRWGILWKPLELRLGNVAPLVESLVRLHNF 366 QA+C+A+Y+I AWTMNCPGS NDRTAFK SGF ++L+ LPKG YIVGD AYP SD VLVPYPGT ++ SQD+ N+Y SQ RI IEQ FG +V+ WGILW+PL+++LG V+ ++ ++VRLHNF Sbjct: 152 QAVCNARYKITAWTMNCPGSCNDRTAFKHSGFERVLKTLPKGAYIVGDGAYPASDQVLVPYPGTTLTPSQDSYNFYQSQARIFIEQAFGNMVKTWGILWRPLQVKLGRVSSVMNAVVRLHNF 273
BLAST of mRNA_P-littoralis_Contig1009.6.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE) HSP 1 Score: 176 bits (445), Expect = 3.730e-51 Identity = 80/122 (65.57%), Postives = 98/122 (80.33%), Query Frame = 1 Query: 1 QAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIEQTFGILVRRWGILWKPLELRLGNVAPLVESLVRLHNF 366 Q +C+A+Y I AWTMNCPGS NDRTAFK S F +L+ LP G YIVGDAAYP SD VLVPYPGT ++ SQDA N+Y SQ RI+IEQ FGI+V+ WGILW+PL++RL V+ ++ S+VRLHNF Sbjct: 218 QGVCNARYEIIAWTMNCPGSCNDRTAFKHSVFGTVLKTLPPGAYIVGDAAYPASDQVLVPYPGTSLTRSQDAYNFYQSQARISIEQAFGIMVKTWGILWRPLDMRLERVSSVINSVVRLHNF 339
BLAST of mRNA_P-littoralis_Contig1009.6.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE) HSP 1 Score: 165 bits (417), Expect = 6.220e-47 Identity = 78/122 (63.93%), Postives = 92/122 (75.41%), Query Frame = 1 Query: 1 QAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIEQTFGILVRRWGILWKPLELRLGNVAPLVESLVRLHNF 366 Q IC+A Y I WTMNCPGSQNDRTAFK SGF LL +P +IVGDAAYP S+ VLVP PGT ++ SQDA N+Y SQ RI+IEQ FGILV+ W ILWKPL +RL V ++ ++VRLHNF Sbjct: 222 QGICNASYEIITWTMNCPGSQNDRTAFKHSGFDALLSKMPPDCFIVGDAAYPASNRVLVPDPGTALTLSQDAYNFYQSQARISIEQAFGILVKTWEILWKPLAIRLDRVGHVMNAIVRLHNF 343
BLAST of mRNA_P-littoralis_Contig1009.6.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE) HSP 1 Score: 157 bits (398), Expect = 6.260e-45 Identity = 76/122 (62.30%), Postives = 93/122 (76.23%), Query Frame = 1 Query: 4 AICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIEQTFGILVRRWGILWKPLELRLGNVAPLVESLVRLHNFC 369 A+CDAQYRI AW MNCPGSQNDRTAF SGF KLL LP+G+++VGDAAY S+ V+VP+PGT +S SQDA NYY+SQCR+AIEQT+GILV G+ +E +V ++VRLHNFC Sbjct: 141 AVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYMSQCRMAIEQTYGILVSVVGMAKVVVE-------HVVNAVVRLHNFC 255
BLAST of mRNA_P-littoralis_Contig1009.6.1 vs. uniprot
Match: A0A6H5K6X9_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6X9_9PHAE) HSP 1 Score: 127 bits (319), Expect = 5.990e-34 Identity = 58/122 (47.54%), Postives = 79/122 (64.75%), Query Frame = 1 Query: 1 QAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIEQTFGILVRRWGILWKPLELRLGNVAPLVESLVRLHNF 366 QA+C YR A PGS ND A+ S K + LP G++I+GDAAYP + +L PYPG ++ +D+ N++LSQ R+ IEQ+FGILV WGILW PL ++LG L+ +L+ LHNF Sbjct: 61 QAMCTVNYRFCAMPAISPGSTNDWVAWNRSSLAKAVARLPAGFHIIGDAAYPIGEKLLTPYPGRQLPAGEDSFNFHLSQLRVKIEQSFGILVSTWGILWTPLRMQLGGRGDLITALLHLHNF 182
BLAST of mRNA_P-littoralis_Contig1009.6.1 vs. uniprot
Match: A0A6H5KNZ9_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNZ9_9PHAE) HSP 1 Score: 131 bits (329), Expect = 7.530e-34 Identity = 60/122 (49.18%), Postives = 82/122 (67.21%), Query Frame = 1 Query: 1 QAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIEQTFGILVRRWGILWKPLELRLGNVAPLVESLVRLHNF 366 QA+C A YR A + PGS ND A+ S K + LP G++I+GDAAYP + +L PYPG ++ +D+ N++LSQ R+ IEQ+FGILV WGILW+PL ++LG A L+ +L LHNF Sbjct: 252 QAMCTADYRFCAMSAISPGSTNDWVAWNRSSLAKAVARLPTGFHIIGDAAYPIGEKLLTPYPGRQLPAGEDSFNFHLSQLRVKIEQSFGILVSTWGILWRPLRVQLGGRADLITALFHLHNF 373
BLAST of mRNA_P-littoralis_Contig1009.6.1 vs. uniprot
Match: A0A6H5KQF5_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQF5_9PHAE) HSP 1 Score: 127 bits (320), Expect = 8.790e-34 Identity = 58/122 (47.54%), Postives = 79/122 (64.75%), Query Frame = 1 Query: 1 QAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIEQTFGILVRRWGILWKPLELRLGNVAPLVESLVRLHNF 366 QA+C A YR A + PGS ND A+ S K + LP G++I+GDAAYP + +L PYPG + +D+ N++LSQ R+ IEQ+FGILV WGILW+PL ++ A L+ +L LHNF Sbjct: 95 QAMCTADYRFYAMSATSPGSTNDWVAWNRSSLAKAVARLPAGFHIIGDAAYPIGEKLLTPYPGRLLPAGEDSFNFHLSQLRVKIEQSFGILVSTWGILWRPLRVQFAGRADLITALFHLHNF 216
BLAST of mRNA_P-littoralis_Contig1009.6.1 vs. uniprot
Match: A0A6H5L3C4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3C4_9PHAE) HSP 1 Score: 128 bits (322), Expect = 1.220e-32 Identity = 59/122 (48.36%), Postives = 80/122 (65.57%), Query Frame = 1 Query: 1 QAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIEQTFGILVRRWGILWKPLELRLGNVAPLVESLVRLHNF 366 QA+C A YR A + PGS ND A+ S K + LP G++I+GDAAYP + +L PYPG + +D+ N++LSQ R+ IEQ+FGILV WGILW+PL ++ G A L+ +L LHNF Sbjct: 289 QAMCTADYRFCAMSAISPGSTNDWVAWNRSSLAKAVARLPAGFHIIGDAAYPIGEKLLTPYPGRLLPPGEDSFNFHLSQVRVMIEQSFGILVATWGILWRPLHVQYGGRADLITALFHLHNF 410 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1009.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1009.6.1 >prot_P-littoralis_Contig1009.6.1 ID=prot_P-littoralis_Contig1009.6.1|Name=mRNA_P-littoralis_Contig1009.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=123bp QAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAback to top mRNA from alignment at P-littoralis_Contig1009:7065..7678- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1009.6.1 ID=mRNA_P-littoralis_Contig1009.6.1|Name=mRNA_P-littoralis_Contig1009.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=614bp|location=Sequence derived from alignment at P-littoralis_Contig1009:7065..7678- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1009:7065..7678- >mRNA_P-littoralis_Contig1009.6.1 ID=mRNA_P-littoralis_Contig1009.6.1|Name=mRNA_P-littoralis_Contig1009.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=369bp|location=Sequence derived from alignment at P-littoralis_Contig1009:7065..7678- (Pylaiella littoralis U1_48)back to top |