mRNA_P-littoralis_Contig1008.8.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig1008.8.2
Unique Name	mRNA_P-littoralis_Contig1008.8.2
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig1008.8.2 vs. uniprot
Match: D8LEH7_ECTSI (Proteasome endopeptidase complex n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEH7_ECTSI)

HSP 1 Score: 356 bits (913), Expect = 1.540e-116
Identity = 193/243 (79.42%), Postives = 203/243 (83.54%), Query Frame = 1

Query:   43 MLSLTARQVLLLLLVAKWTDTSVATTLVAARFEGGVVIGADSRTSQGSFVANRLTDKIDLVSPGIFLARSGSSADTQFVVGVVEARMEAYRTEFGRYPTVRAAATATRNLCYANKDQLSAGIICAGWDDREGGSVFSVPQGGSLLEQPFAISGSGSVYALGYCDDNLRPDLARDECVSHVQRALEMAVSRDGASGGVIRLCVVSGDGVERWTVVPGGPAAEEAELQE---SSREWGRWSGGGG 762
            MLS  A   L LL+ A       ATTLVAARF+GGVVIGADSRTSQGSFVAN  TDKI  VSPG+FLARSGSSADTQFV GV+EA++EAYRTEFGRYPTVRAAATATRNLCYANKDQLSAGIICAGWD REGGSVFSVPQGGSLLEQPFA+SGSG+VYALGYCDDNLRP L RDECVSHV+ ALEMAV RDGASGGVIRLCVVS DGVERWTVVPG  AA  A + E     RE  R S GGG
Sbjct:    1 MLSAFAAAALALLVAAAGLVD--ATTLVAARFDGGVVIGADSRTSQGSFVANSGTDKITPVSPGVFLARSGSSADTQFVAGVIEAKLEAYRTEFGRYPTVRAAATATRNLCYANKDQLSAGIICAGWDSREGGSVFSVPQGGSLLEQPFAVSGSGAVYALGYCDDNLRPGLGRDECVSHVRTALEMAVRRDGASGGVIRLCVVSADGVERWTVVPGMTAAAAAGVGEXXXGRREARRASDGGG 241

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BLAST of mRNA_P-littoralis_Contig1008.8.2 vs. uniprot
Match: A0A1Y1WB45_9FUNG (Proteasome subunit beta n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WB45_9FUNG)

HSP 1 Score: 224 bits (572), Expect = 3.830e-66
Identity = 105/203 (51.72%), Postives = 150/203 (73.89%), Query Frame = 1

Query:  100 DTSVATTLVAARFEGGVVIGADSRTSQGSFVANRLTDKIDLVSPGIFLARSGSSADTQFVVGVVEARMEAYRTEFGRYPTVRAAATATRNLCYANKDQLSAGIICAGWDDREGGSVFSVPQGGSLLEQPFAISGSGSVYALGYCDDNLRPDLARDECVSHVQRALEMAVSRDGASGGVIRLCVVSGDGVERWTVVPGGPAAEE 708
            + ++ TT++A +F+GGVV+GADSRT+ G+++ANR+TDK+  +   I+  RSGS+ADTQ V  +V+  M+ Y  + G  PTV+ AA+  + +CY NK+ LSAGII AGWD+R+G SV+++P GGSL  +PFAI GSGS Y  GYCD   RPDL+RDEC+  V+ ++ +A++RDG+SGGV+RL V++ DGVER   VPG    E+
Sbjct:    8 EVNLGTTIMAVQFDGGVVVGADSRTTTGAYIANRVTDKLTKIHDRIYCCRSGSAADTQAVADIVQYHMQMYTAQHGEAPTVKVAASLFQEICYQNKNNLSAGIIVAGWDERDGASVYNIPLGGSLHREPFAIGGSGSTYIYGYCDKVFRPDLSRDECIEFVKNSVSLAMTRDGSSGGVVRLAVITKDGVERQ-FVPGDQLPEQ 209

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BLAST of mRNA_P-littoralis_Contig1008.8.2 vs. uniprot
Match: A0A0K6FW39_9AGAM (Proteasome subunit beta n=16 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A0K6FW39_9AGAM)

HSP 1 Score: 214 bits (544), Expect = 1.090e-61
Identity = 106/202 (52.48%), Postives = 141/202 (69.80%), Query Frame = 1

Query:   85 VAKWTDTSVATTLVAARFEGGVVIGADSRTSQGSFVANRLTDKIDLVSPGIFLARSGSSADTQFVVGVVEARMEAYRTEFGRYPTVRAAATATRNLCYANKDQLSAGIICAGWDDREGGSVFSVPQGGSLLEQPFAISGSGSVYALGYCDDNLRPDLARDECVSHVQRALEMAVSRDGASGGVIRLCVVSGDGVERWTVVPG 690
            V K  + ++ T+++A +FEGGVVIGADSRT+ GS++ANR+TDK+  V   I+  RSGS+ADTQ V  +V   ++ Y  ++   PTV  AAT  + +CY NKD LSAGII AGWD + GGSV+++P GG L  QP+AI GSGS Y  GYCD   R    RDE V+ V+  L +A+SRDG+SGG IR+CV++ DGVER   +PG
Sbjct:    8 VLKKGEVNLGTSIMAVQFEGGVVIGADSRTTMGSYIANRVTDKLTHVHDRIYCCRSGSAADTQAVADIVHYYLQMYEQQYSERPTVHTAATIFQRICYDNKDALSAGIIVAGWDKQVGGSVYNIPVGGGLFRQPWAIGGSGSTYVYGYCDATYREGWGRDETVNFVKNTLALAMSRDGSSGGTIRMCVITEDGVERH-FIPG 208

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BLAST of mRNA_P-littoralis_Contig1008.8.2 vs. uniprot
Match: V3ZJH0_LOTGI (Proteasome subunit beta n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZJH0_LOTGI)

HSP 1 Score: 210 bits (535), Expect = 8.640e-61
Identity = 101/197 (51.27%), Postives = 137/197 (69.54%), Query Frame = 1

Query:   91 KWTDTSVATTLVAARFEGGVVIGADSRTSQGSFVANRLTDKIDLVSPGIFLARSGSSADTQFVVGVVEARMEAYRTEFGRYPTVRAAATATRNLCYANKDQLSAGIICAGWDDREGGSVFSVPQGGSLLEQPFAISGSGSVYALGYCDDNLRPDLARDECVSHVQRALEMAVSRDGASGGVIRLCVVSGDGVERWTV 681
            KWT      T+ A  F+GGVVIGADSRT+ G+++ANR+TDK+  V+  I+  RSGS+ADTQ V  +V+ ++  Y  E G  P V  AA   R LCY ++D +SAGII AGWD +EGG VF+VP GG ++ QPFAI GSGS Y  GY D   +P ++++EC+  V  AL +A++RDG+SGG+IRL  ++ DGVER T+
Sbjct:    5 KWT------TIAAVEFDGGVVIGADSRTTSGAYIANRVTDKLTKVTDKIYCCRSGSAADTQAVADIVKYQLNFYEMEMGEEPLVHTAAHTFRELCYDHRDNISAGIIVAGWDKKEGGQVFAVPLGGMVVRQPFAIGGSGSTYLYGYVDSQFKPKMSKEECLPFVANALSLAINRDGSSGGIIRLAAITKDGVERITL 195

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BLAST of mRNA_P-littoralis_Contig1008.8.2 vs. uniprot
Match: A0A8H8LV04_9AGAM (Proteasome subunit beta n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8LV04_9AGAM)

HSP 1 Score: 210 bits (534), Expect = 3.140e-60
Identity = 104/202 (51.49%), Postives = 140/202 (69.31%), Query Frame = 1

Query:   85 VAKWTDTSVATTLVAARFEGGVVIGADSRTSQGSFVANRLTDKIDLVSPGIFLARSGSSADTQFVVGVVEARMEAYRTEFGRYPTVRAAATATRNLCYANKDQLSAGIICAGWDDREGGSVFSVPQGGSLLEQPFAISGSGSVYALGYCDDNLRPDLARDECVSHVQRALEMAVSRDGASGGVIRLCVVSGDGVERWTVVPG 690
            V K  + ++ T+++A +F+ GVVIGADSRT+ GS++ANR+TDK+  V   ++  RSGS+ADTQ V  +V   ++ Y  ++G  PTV AAAT  + LCY NKD LSAGII AGWD   G SV+++P GG L  QP+AI GSGS Y  GYCD   R    RDE V+ V+  L +A+SRDG+SGG IR+CV++ +GVER   +PG
Sbjct:    8 VLKKGEVNLGTSIMAVQFKDGVVIGADSRTTMGSYIANRVTDKLTFVHDRVYCCRSGSAADTQAVADIVHYYLQMYEQQYGDPPTVHAAATLFQRLCYENKDNLSAGIIVAGWDKEAGPSVYNIPVGGGLFRQPWAIGGSGSTYVYGYCDATYREGWGRDETVNFVKNTLALAMSRDGSSGGTIRMCVITEEGVERH-FIPG 208

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BLAST of mRNA_P-littoralis_Contig1008.8.2 vs. uniprot
Match: A0A8J2RYU8_9CRUS (Proteasome subunit beta n=1 Tax=Daphnia galeata TaxID=27404 RepID=A0A8J2RYU8_9CRUS)

HSP 1 Score: 211 bits (536), Expect = 3.390e-60
Identity = 98/196 (50.00%), Postives = 139/196 (70.92%), Query Frame = 1

Query:   97 TDTSVATTLVAARFEGGVVIGADSRTSQGSFVANRLTDKIDLVSPGIFLARSGSSADTQFVVGVVEARMEAYRTEFGRYPTVRAAATATRNLCYANKDQLSAGIICAGWDDREGGSVFSVPQGGSLLEQPFAISGSGSVYALGYCDDNLRPDLARDECVSHVQRALEMAVSRDGASGGVIRLCVVSGDGVERWTVV 684
            ++ S  T+++A  F GGVVIGADSRTS G++VANR+TDK+  ++  I+  RSGS+ADTQ +  +V   +E +  + G  P V+ AA+  + LCY  +DQL+AGIICAGWD R GG VF++P GG  + Q FAI GSGS Y  G+ D N + D+ +DECV  V + L +A++RDG+SGGV+RL +++ DG+ER TV+
Sbjct:   56 SEHSTGTSIMAVEFNGGVVIGADSRTSTGAYVANRVTDKLTKITNHIYCCRSGSAADTQAIADIVNYHLEFHEVQLGEAPLVKTAASVFQELCYNYRDQLTAGIICAGWDRRHGGQVFNIPLGGMCVRQSFAIGGSGSTYVFGFVDSNFKKDMTKDECVEFVLKTLALAMNRDGSSGGVVRLGIITEDGIERRTVL 251

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BLAST of mRNA_P-littoralis_Contig1008.8.2 vs. uniprot
Match: A0A4P9XSG4_9FUNG (Proteasome subunit beta n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XSG4_9FUNG)

HSP 1 Score: 209 bits (531), Expect = 4.020e-60
Identity = 103/196 (52.55%), Postives = 133/196 (67.86%), Query Frame = 1

Query:   85 VAKWTDTSVATTLVAARFEGGVVIGADSRTSQGSFVANRLTDKIDLVSPGIFLARSGSSADTQFVVGVVEARMEAYRTEFGRYPTVRAAATATRNLCYANKDQLSAGIICAGWDDREGGSVFSVPQGGSLLEQPFAISGSGSVYALGYCDDNLRPDLARDECVSHVQRALEMAVSRDGASGGVIRLCVVSGDGVER 672
            V K  + ++ TT++A  F+GGVVI ADSRT+ G+++ANR+TDK+  V   I+  RSGS+ADTQ V  +V   M+ Y  E    P  R AA   + LCY NKD LSAGII AGWD   GG V+S+P GGSL  QPFAI GSGS Y  GYCD   R  ++RDECV   + A+ +A++RDG+SGGVIRL +++  GVER
Sbjct:    4 VLKAGEANLGTTIMAVEFDGGVVIAADSRTTTGAYIANRVTDKLTKVHDRIYCCRSGSAADTQAVADIVHYYMQMYSVEHSEAPRTRVAAAIFQELCYKNKDALSAGIIVAGWDKHTGGQVYSIPLGGSLHRQPFAIGGSGSTYIYGYCDSAFRVGMSRDECVEFTKNAVSLAMARDGSSGGVIRLAIITEGGVER 199

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BLAST of mRNA_P-littoralis_Contig1008.8.2 vs. uniprot
Match: E9GZ78_DAPPU (Proteasome subunit beta n=4 Tax=Daphnia TaxID=6668 RepID=E9GZ78_DAPPU)

HSP 1 Score: 209 bits (531), Expect = 5.900e-60
Identity = 98/196 (50.00%), Postives = 138/196 (70.41%), Query Frame = 1

Query:   97 TDTSVATTLVAARFEGGVVIGADSRTSQGSFVANRLTDKIDLVSPGIFLARSGSSADTQFVVGVVEARMEAYRTEFGRYPTVRAAATATRNLCYANKDQLSAGIICAGWDDREGGSVFSVPQGGSLLEQPFAISGSGSVYALGYCDDNLRPDLARDECVSHVQRALEMAVSRDGASGGVIRLCVVSGDGVERWTVV 684
            ++ S  T+++A  F GGVVIGADSRTS G++VANR+TDK+  ++  I+  RSGS+ADTQ +  +V   +E +  + G  P V+ AA+  + LCY  +DQL+AGIICAGWD R GG VF++P GG  + Q FAI GSGS Y  G+ D N +  + +DECV  V + L +A+SRDG+SGGV+RL +++ DG+ER TV+
Sbjct:   20 SEHSTGTSIMAVEFNGGVVIGADSRTSTGAYVANRVTDKLTKITNHIYCCRSGSAADTQAIADIVNYHLEFHEVQLGEAPLVKTAASVFQELCYNYRDQLTAGIICAGWDRRHGGQVFNIPLGGMCVRQSFAIGGSGSTYVFGFVDSNFKKGMIKDECVQFVLKTLALAMSRDGSSGGVVRLGIITEDGIERRTVL 215

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BLAST of mRNA_P-littoralis_Contig1008.8.2 vs. uniprot
Match: A0A8H7SDF9_9FUNG (Proteasome subunit beta n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7SDF9_9FUNG)

HSP 1 Score: 208 bits (529), Expect = 7.400e-60
Identity = 103/200 (51.50%), Postives = 141/200 (70.50%), Query Frame = 1

Query:   91 KWTDTSVATTLVAARFEGGVVIGADSRTSQGSFVANRLTDKIDLVSPGIFLARSGSSADTQFVVGVVEARMEAYRTEFGRYPTVRAAATATRNLCYANKDQLSAGIICAGWDDREGGSVFSVPQGGSLLEQPFAISGSGSVYALGYCDDNLRPDLARDECVSHVQRALEMAVSRDGASGGVIRLCVVSGDGVERWTVVPG 690
            K  + ++ T+++A  F  GVVIGADSRT+ G+++ANR+TDK+  V   I+  RSGS+ADTQ V  +V   ++ Y  +    P+VR A+   + LCY NKD L+AGII AGWD++ G SV++VP GGSL +QPFAI GSGS Y  GYCD N + ++ + ECV  V+ +L +A+SRDG+SGGVIRL V++ DGVER   VPG
Sbjct:    2 KQGEVNLGTSIMAVAFADGVVIGADSRTTTGAYIANRVTDKLTKVHDRIYCCRSGSAADTQAVADIVHYYLQLYSVQENEMPSVRTASALFQELCYQNKDMLTAGIIVAGWDEKNGPSVYNVPLGGSLHKQPFAIGGSGSTYIYGYCDSNFKENMTQTECVEFVKNSLSLAMSRDGSSGGVIRLAVITKDGVERM-FVPG 200

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BLAST of mRNA_P-littoralis_Contig1008.8.2 vs. uniprot
Match: A0A1P8DB30_HALDI (Proteasome subunit beta n=2 Tax=Haliotis TaxID=6452 RepID=A0A1P8DB30_HALDI)

HSP 1 Score: 209 bits (531), Expect = 8.090e-60
Identity = 98/194 (50.52%), Postives = 135/194 (69.59%), Query Frame = 1

Query:  100 DTSVATTLVAARFEGGVVIGADSRTSQGSFVANRLTDKIDLVSPGIFLARSGSSADTQFVVGVVEARMEAYRTEFGRYPTVRAAATATRNLCYANKDQLSAGIICAGWDDREGGSVFSVPQGGSLLEQPFAISGSGSVYALGYCDDNLRPDLARDECVSHVQRALEMAVSRDGASGGVIRLCVVSGDGVERWTV 681
            + +  TT+ A  F+GGVVIGADSRT+ GS++ANR+TDK+  V+  I+  RSGS+ADTQ V  +V   +  Y+ E G  P V+ AA   R+LCY ++D L+AGII  GWD R GG VFS+P GG L+ QPFAI GSGS Y  GY D   +  L+++EC+  V  AL +A++RDG+SGG++RL  ++ DG ER+T+
Sbjct:   30 ELTTGTTIAAVEFDGGVVIGADSRTTTGSYIANRVTDKLTKVTDYIYCCRSGSAADTQAVADIVNYHLNFYKMEMGEEPEVKTAANVFRDLCYEHRDNLTAGIIVGGWDKRGGGQVFSIPLGGMLVRQPFAIGGSGSTYLYGYVDSQFKVGLSKEECLQFVANALSLAMNRDGSSGGIVRLAAITKDGTERFTL 223

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig1008.8.2 vs. uniprot

BLAST of mRNA_P-littoralis_Contig1008.8.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

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POSITION

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Match Name	E-value	Identity	Description
D8LEH7_ECTSI	1.540e-116	79.42	Proteasome endopeptidase complex n=2 Tax=Ectocarpu...	[more]
A0A1Y1WB45_9FUNG	3.830e-66	51.72	Proteasome subunit beta n=1 Tax=Linderina pennispo...	[more]
A0A0K6FW39_9AGAM	1.090e-61	52.48	Proteasome subunit beta n=16 Tax=Rhizoctonia solan...	[more]
V3ZJH0_LOTGI	8.640e-61	51.27	Proteasome subunit beta n=1 Tax=Lottia gigantea Ta...	[more]
A0A8H8LV04_9AGAM	3.140e-60	51.49	Proteasome subunit beta n=2 Tax=Ceratobasidium sp....	[more]
A0A8J2RYU8_9CRUS	3.390e-60	50.00	Proteasome subunit beta n=1 Tax=Daphnia galeata Ta...	[more]
A0A4P9XSG4_9FUNG	4.020e-60	52.55	Proteasome subunit beta n=1 Tax=Thamnocephalis sph...	[more]
E9GZ78_DAPPU	5.900e-60	50.00	Proteasome subunit beta n=4 Tax=Daphnia TaxID=6668...	[more]
A0A8H7SDF9_9FUNG	7.400e-60	51.50	Proteasome subunit beta n=1 Tax=Mucor circinatus T...	[more]
A0A1P8DB30_HALDI	8.090e-60	50.52	Proteasome subunit beta n=2 Tax=Haliotis TaxID=645...	[more]

Pages

Properties


Property Name	Value
Stop	1
Start	1
Seed ortholog	2880.D8LEH7
Preferred name	PSMB6
PFAMs	Proteasome
Model size	1868
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02738,ko:K02741,ko:K11507
KEGG Pathway	ko03050,map03050
KEGG Module	M00337,M00340
Hectar predicted targeting category	signal peptide
GOs	GO:0000502,GO:0001889,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003674,GO:0003824,GO:0004175,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005839,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009617,GO:0009628,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0014070,GO:0014889,GO:0016020,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019774,GO:0019882,GO:0019941,GO:0030071,GO:0030162,GO:0030163,GO:0031331,GO:0031597,GO:0031974,GO:0031981,GO:0031984,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034097,GO:0034515,GO:0036211,GO:0042175,GO:0042221,GO:0042493,GO:0043161,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043279,GO:0043412,GO:0043500,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048536,GO:0048538,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051246,GO:0051247,GO:0051336,GO:0051602,GO:0051603,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0052547,GO:0052548,GO:0060255,GO:0061008,GO:0062033,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0070555,GO:0070628,GO:0070646,GO:0070647,GO:0070887,GO:0071214,GO:0071257,GO:0071310,GO:0071345,GO:0071347,GO:0071704,GO:0080090,GO:0090068,GO:0098586,GO:0098827,GO:0104004,GO:0140096,GO:1901423,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990111,GO:2000116,GO:2001252
Exons	4
Evalue	3.5e-122
EggNOG OGs	KOG0174@1\|root,KOG0174@2759\|Eukaryota
Ec32 ortholog description	Nucleophile aminohydrolases, N-terminal
Ec32 ortholog	Ec-21_004640.1
EC	3.4.25.1
Description	Proteasome subunit beta
Cds size	735
COG category	O
BRITE	ko00000,ko00001,ko00002,ko01000,ko01002,ko03036,ko03051

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig1008:29970..35236-
coding sequence from alignment at P-littoralis_Contig1008:29970..35236-

protein sequence of mRNA_P-littoralis_Contig1008.8.2

>prot_P-littoralis_Contig1008.8.2 ID=prot_P-littoralis_Contig1008.8.2|Name=mRNA_P-littoralis_Contig1008.8.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=245bp
MLSLTARQVLLLLLVAKWTDTSVATTLVAARFEGGVVIGADSRTSQGSFV
ANRLTDKIDLVSPGIFLARSGSSADTQFVVGVVEARMEAYRTEFGRYPTV
RAAATATRNLCYANKDQLSAGIICAGWDDREGGSVFSVPQGGSLLEQPFA
ISGSGSVYALGYCDDNLRPDLARDECVSHVQRALEMAVSRDGASGGVIRL
CVVSGDGVERWTVVPGGPAAEEAELQESSREWGRWSGGGGSGGG*

mRNA from alignment at P-littoralis_Contig1008:29970..35236-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig1008.8.2 ID=mRNA_P-littoralis_Contig1008.8.2|Name=mRNA_P-littoralis_Contig1008.8.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=5267bp|location=Sequence derived from alignment at P-littoralis_Contig1008:29970..35236- (Pylaiella littoralis U1_48)
GATTACGCACTACTGCCCGTGCTTCCCTGTTTTTACTGCAGTATGTTGTC
CTTGACTGCAAGGCAAGTTCTGCTGCTGCTACTAGTGGCAAAATGGACCG
ACACTTCTGTTGCAACAACGCTCGTGGCTGCCCGCTTTGAGGGAGGCGTC
GTGATCGGCGCGGACTCCCGCACCAGCCAAGGCAGCTTCGTGGCGAATCG
CCTCACGGACAAGATCGACCTCGTGTCTCCCGGAATTTTTCTGGCTCGCT
CGGGGAGCTCCGCGGGTACGTATGCAAGCAAGCACTAGCAGCAGCAGTCA
TGTTTTACAGCAGTTGAAGTAGTGGACAAATGGGGGTATACCCCTATATA
CCCACCGCCCTCTTCAGACAATTGGGGGTATACACCATAAAACGCGGATG
CGGGAGCTGCCCGCGGTCGGCCCAAACTCGACAAAACTCCATCTTGCGCG
TCGGTAGTATGCTCAGGAACCATGCCGAGCCTGTTAACCAGCTTCGATGG
GTTGTCGGGCACGTTTTCTGGCCCAACAGCACAGAAGAACCACCGGTCCA
CCCGCAATACCCCGGTGCGTGTGTCCGATGTCCCGGGGGATATGATATAT
CCCCGACAAGTCTCAAACGAAGTATATTTTTCAATCCCCCCCGTTTGCCC
GTGACTTTCACTTCTTTGTACAATGAGTTTGTCCTCTTGTGTCCGAAGGC
ATCCATCCCCCCATTCGTCCGCGTTGGAAGCCATCCACTGCACGTCCACT
CCGTCGCCTACCAGCCCGAACAGACGCACGGCACAACATCGAATAGCCAC
GTGGAGACCACCCCGTCAACCGACTCTCACGGCGCAACATCGAAACATTC
GGTCTCCTCGTAGCTTACCCCCTTCCTTCTTCGGTGGTGCACCACATACA
CACAAGCACACACACAAGCACGAAATATTGCGTGAGATACGTTAGTCAAC
AGAAATGAACGCACGTACGCCGTGTACAAGCAAAGCAAGGCCACGAGACT
ACTAAGTTCGCAATTTTTCTCTGTTCTATGGAGCGCGCGCGCTGGGGGAT
GCTTGTGTCTGTCCTTGTGTGTGTGGCGTACCGCGGGAGACAACTCTTAA
GTACTTCTGTGTGGCGTACCGCGGGAGACAACTGTTGGACTTCTGTGTAA
GCTGCAGCGAGACCGAGTCCTCGATGTGATGCCGGGAAAAAATGCCCTAA
AACCCCACCAAAGCTGTTGTACAGGCTCGGCATGAGCGTGCTACCGACGC
GCTCGAACAGAGTTCAGAGGGGGTTTGGGCTGCCCGGGGACAGCTTCCAC
GGGCACGTTTTTGGTACACCCCCATTTGTCTGAAAAGGGCGGGGGTTGTA
CCACTGTTTGCTCGGTTCATTTGTCTTTTACTGACATGTGCTACGTCACG
GAGCGCATCCTGAGGACAGGGGTGTGTGCACGTGTGGAATATTGTGCAAG
TACGTCTGAAGGTAGAATGACTGGTTGGCGGCAGTAGCACCGTCTCTGTA
TGCTGTAATCAAGGACACGATTTAATGTCTGATCAGGGCAACAGGATTTT
TTTTTCAACGGTACGTTTGAGTGCATGTGGGTGCATGTGGGTGCATGTGA
GTGCATGTGTATTGGCCGCGATGCTGCACCATAAAGAACACCGCAAGCCG
GACGACTACGATGCCGAACTACAGGCCGCTGCAGTATCGGAAGTAGGGGG
CGAACAGGTGCATCTACCGTTATAGCGCTCTCCTCGAGCTCGATGAGTCT
CTTCGACGGTTTTGGCTGTCCCGCTGAAGGGTTGTCTACATGGAAGTCCC
TTGTAAACTAGACTGGACCTCGTATGTATGCCTTCGTATTTGCCCTTGCC
TCTGCCGGCAGTGCCTTCGGTGTGTTACCTATCACAGGTGTATGTCTCTG
AGAAGTTTTGTGGTGTACAGTGTTCGGTTACCGCCTCGAAAAGTACACGT
GGTGCTGAATTTAATATTCGTGCATCCTCGACTCACGTTCGATTTGCGGT
TGGCTCGCAGAATCGAAGGTGACGGATCTTTCTCTCCGTGATGAAAAAAC
AAACACGTACGGCCTACCTACTATATACCGACCAACGGCTGCTGCGTAGA
CACGACACTGCAAGCTTAATTTTTTGTGCAAATGCGGGTTCAGCTTACTC
TCCCAACCATGTGGTCGCCACCGGCGTCAGGAATACACGAAAGCATGCAT
ACGCCTCTCCAGCTCGCACTTGATTTCCCGAACGGTAGAATCATGATGAT
CACTACCACCACACACCACACCCGGTGATCTCCCGAATCTTCCCATCATG
CCGACTATCACCTCGACTCACGCTCCGCATTTTCTGTTTTCGTTTTTTTG
GTTTCACCGGCACCTGCAAAAAATGAAGACACGCAGTTCGTCGTCGGCGT
GGTCGAGGCCAGGATGGAGGCCTACCGGACAGAGTTCGGCCGCTATCCCA
CCGTCCGAGCGGCAGCGACGGCCACGCGAAACCTTTGTTACGCCAACAAG
GATCAGCTGTCGGCGGGCATCATTTGCGCGGGATGGGACGATCGAGAAGG
AGGGTCGGTCTTCTCCGTACCTCAGGTAGACGATGCGGGCCCTGGGGGGG
AGGGGGGTACTCACTTTTTTATTGCCCTGAGTCATTTGGCCATTGGCCAC
GCAATCCCTTTTTAGGCGTATCACGGTTTCCACCTAGTGGAAGTATCGCC
GCCAATATCTTGGTGCTCTTTTGCGTTTTTCAGGAGGGGGATGGGGGCGG
GTAACGTTGTGGGTGTGTCAGGCAAAATAAATGAAGAAAACAGTCTCAGG
TGTTGTAAAACTCGTCACGCGGGAAGGAGATATTGAATAAACCCACGACG
ACGGGGGGAAGTATCGTGGATGAACAGCGTATTGTGGTGTCCCGCTTGTC
AAAATTGGTGGCGTTGTCGTGAAAACACATCTTCTCCCACGGATACCCGG
GGCCCGGCACTGAAGTTTGCCCTGATGTGTGCCTTGTATTTTTGTCTTCA
AGCTGTAACTGCCGTTGTTTTCAGACTTCAGTACCACTGCCTGCCTACGG
ATCGATCCCTCGTTCTTTTACAAACCCTTACCTTACTCACACACCCTGTT
TCTTCGAGGTGCTATTATTTCATGCGGTGTAGGTTTTCTCTTATTGCTCA
TATCATATCATATGTTTTTTTATTTTTTTTTATTTCGCGTGTGCGTTCAT
CGTGCGTTTGTTTTTGTTCGTGTTTTCGCATTTCTTGTTCAGGGAGGTTC
ACTTCTGGAGCAACCGTTCGCGATTAGTGGTTCCGGTTCGGTGTACGCCC
TAGGCTACTGCGATGACAACCTGAGACCTGATTTAGCAAGGTACTATGTA
AACCAAACCCAAAAAAAACATTTTGCTTTTGTTTTTGTTTTGTTGTTTTA
AGTACAGTACCAGGTAGTATTTTTGTTTTTTTTCTGTTTCGCATTGATCT
TGTTCATCGTGTGAGTGAAAGATCCGACTCATACCACATGAGGGTACCAG
CATATTTTTTGCTGGTCGAAGATGTGGCAGCGAATTCACAAAGGTAAATA
CGTGGTGTCAAGTCTGGCGCTCACCGCCCGCCGTGAGCGCATGAATGTGG
TCGTGATTTACATGTTCACGTCGTATGGAAAGGAGCGTCCGATGAGTTTT
TTTTCGGGTGAGTTACCCTCTTCACCTCGCTCATCCCTCCGCCCCTTTCT
TTATTCTGTTTCACCAACCACATGGATAGAAGAGGAAGGGACGCGAAGGG
GGGTGACGCGAGCACCCACACTTCTGTGCAAAACAAAACTAACCTTACCT
TCGCCTGCGGTTCTCTCCATGCTTGAAGATCCTCTCATCATGGTGTGAAA
ACGTTTATGTCACTCGTGGCATTTGGCCACTATCGCAGGATAGTTTACAT
GTATTTTTTTTTTCTGATATATTTGCCCGATGACAAATCTACGGAATGCA
TGCATTTAGGGACGAGTGCGTCTCGCACGTGCAGAGGGCGCTAGAGATGG
CGGTCAGCCGAGACGGCGCTTCGGGGGGCGTGATCCGGCTGTGCGTTGTT
TCCGGTGATGGGGTGGAGCGGTGGACGGTCGTCCCCGGCGGGCCGGCGGC
AGAGGAGGCAGAGCTGCAGGAGAGCTCGAGAGAATGGGGTAGATGGTCCG
GCGGTGGCGGCAGCGGTGGTGGATGATGGTGTTGCATCCCCCGGCATGGG
TTGACACTCTGTTCTGTTGTACATACATACATTGCATCATGAAAGTAAAA
TAGTTCCGGACCTTGTTAGTTATCCCCCGCCTGCTAAGCCGCCACCGGAA
TAGTTGATGCGAGAGATGCAGGAGGGAGAGAGACTGTGCGTACCACAAGC
GTAAGAGCAGGGTGTGTGACCTGCCTTAATGGTACGTTGTCCCGTTTTGG
CCATCGTGCTTGTTTAACTCCAGAGGCGTTTGTTTCTGCTGCCGGAAATG
GGTCGGTGCTCGGTATCGTGCCTTTTTGGCACTAATAAAATCTCGGGGGC
GGGGGGAATACTTTACGAAATGTGGGGTGCAGAGAGAGAGATGGGCTGCG
TAACAGAGCAGGCTGGATAAAGCAAATATTAGCTGTGGTCGAAAGCGAGG
TCCCATGATCGGATGGGCAAAGCATAAAACAGTCGAGAGCAGCTCGAAGT
ATCATACCCTACATACACAGCGTTGCGCATGTCTTCTCACAGAAATGGGC
GACGACGGGCAGATATCCATGCTTGTCTTCGTAGTAAACTGCTGTACATA
ATCCCGTCTGAAATAACCATCAAACCAAATCAAAGAAAGGACACGCATAC
GCACTTGACACAATCTATGCTTCGATCAGAGTCAGTATCAGATTTGGCTG
ATAACTCTCTCGCAGGGTTGAGAGTCCCCTCAAGAGATTTGCGTTTGCGC
GCCTCTAAAAAACTGCTGAGGGTGTCGTGATGGAGGTGTAGGACTCACGA
CAACAACGCGTGCCGTATCAGAGTCGTCAAAGACGAAACCGGAGCAAGCG
CGGTTTTCACCCAACCAGGATCGGACAGCGGGAAGCGCGAAGCGCCGTGG
GGTGCTCGGCGAGAGTCGTATGAGGGGTGAGCTGCATCCCACGCGTGGGG
ACCGTGGGAAATGAAAGCAAGACATGGAACCCGTGAACACACTGGAGCAA
GCAGGAAGAGCAGCAACACGCGACTAAACTGGTGCGAGCACACCAAAAAT
GGGAGAATGGGAGAATACCTGCCGCCCACCCTTCTACGCAACACCTTCAA
CAGCCCCGCCAAAACCC

Coding sequence (CDS) from alignment at P-littoralis_Contig1008:29970..35236-

>mRNA_P-littoralis_Contig1008.8.2 ID=mRNA_P-littoralis_Contig1008.8.2|Name=mRNA_P-littoralis_Contig1008.8.2|organism=Pylaiella littoralis U1_48|type=CDS|length=735bp|location=Sequence derived from alignment at P-littoralis_Contig1008:29970..35236- (Pylaiella littoralis U1_48)
ATGTTGTCCTTGACTGCAAGGCAAGTTCTGCTGCTGCTACTAGTGGCAAA
ATGGACCGACACTTCTGTTGCAACAACGCTCGTGGCTGCCCGCTTTGAGG
GAGGCGTCGTGATCGGCGCGGACTCCCGCACCAGCCAAGGCAGCTTCGTG
GCGAATCGCCTCACGGACAAGATCGACCTCGTGTCTCCCGGAATTTTTCT
GGCTCGCTCGGGGAGCTCCGCGGACACGCAGTTCGTCGTCGGCGTGGTCG
AGGCCAGGATGGAGGCCTACCGGACAGAGTTCGGCCGCTATCCCACCGTC
CGAGCGGCAGCGACGGCCACGCGAAACCTTTGTTACGCCAACAAGGATCA
GCTGTCGGCGGGCATCATTTGCGCGGGATGGGACGATCGAGAAGGAGGGT
CGGTCTTCTCCGTACCTCAGGGAGGTTCACTTCTGGAGCAACCGTTCGCG
ATTAGTGGTTCCGGTTCGGTGTACGCCCTAGGCTACTGCGATGACAACCT
GAGACCTGATTTAGCAAGGGACGAGTGCGTCTCGCACGTGCAGAGGGCGC
TAGAGATGGCGGTCAGCCGAGACGGCGCTTCGGGGGGCGTGATCCGGCTG
TGCGTTGTTTCCGGTGATGGGGTGGAGCGGTGGACGGTCGTCCCCGGCGG
GCCGGCGGCAGAGGAGGCAGAGCTGCAGGAGAGCTCGAGAGAATGGGGTA
GATGGTCCGGCGGTGGCGGCAGCGGTGGTGGATGA