mRNA_P-littoralis_Contig1008.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1008.4.1
Unique NamemRNA_P-littoralis_Contig1008.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1008.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1008contigP-littoralis_Contig1008:3562..3937 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size376
Hectar predicted targeting categorysignal peptide
Exons1
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789347.3642392-CDS-P-littoralis_Contig1008:3561..39151680789347.3642392-CDS-P-littoralis_Contig1008:3561..3915Pylaiella littoralis U1_48CDSP-littoralis_Contig1008 3562..3915 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789347.3761382-UTR-P-littoralis_Contig1008:3915..39371680789347.3761382-UTR-P-littoralis_Contig1008:3915..3937Pylaiella littoralis U1_48UTRP-littoralis_Contig1008 3916..3937 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1008.4.1prot_P-littoralis_Contig1008.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1008 3562..3915 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1008.4.1

>prot_P-littoralis_Contig1008.4.1 ID=prot_P-littoralis_Contig1008.4.1|Name=mRNA_P-littoralis_Contig1008.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=118bp
MNRTTWTCCCFFFVVVAASDGRLAENTPFSWPTIIFTCSASGPTLVLIFF
FLTAAGAPVSVWLLERARVCLLLLASFSSPPPFPLHAAVTARVQNLKGKL
RSTCRYRSLGAAFRADAI
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mRNA from alignment at P-littoralis_Contig1008:3562..3937-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1008.4.1 ID=mRNA_P-littoralis_Contig1008.4.1|Name=mRNA_P-littoralis_Contig1008.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=376bp|location=Sequence derived from alignment at P-littoralis_Contig1008:3562..3937- (Pylaiella littoralis U1_48)
ACCGGTGAAGGTGGTGAAAACTATGAATAGGACGACGTGGACTTGTTGCT
GTTTTTTTTTTGTAGTAGTAGCTGCGAGCGATGGACGACTCGCAGAAAAC
ACCCCTTTCAGCTGGCCAACAATTATTTTCACTTGCAGCGCCTCCGGGCC
AACCCTTGTTTTAATCTTTTTTTTTTTGACAGCTGCTGGTGCCCCGGTTT
CTGTGTGGCTCCTTGAAAGAGCACGTGTATGCTTGCTGTTGCTTGCATCG
TTTAGTTCTCCCCCACCGTTTCCCCTCCACGCTGCTGTAACAGCTCGGGT
TCAAAATTTAAAGGGAAAGCTGAGGTCTACATGCCGGTACCGCTCTCTTG
GGGCAGCCTTCCGCGCGGATGCCATA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1008:3562..3937-

>mRNA_P-littoralis_Contig1008.4.1 ID=mRNA_P-littoralis_Contig1008.4.1|Name=mRNA_P-littoralis_Contig1008.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=354bp|location=Sequence derived from alignment at P-littoralis_Contig1008:3562..3937- (Pylaiella littoralis U1_48)
ATGAATAGGACGACGTGGACTTGTTGCTGTTTTTTTTTTGTAGTAGTAGC
TGCGAGCGATGGACGACTCGCAGAAAACACCCCTTTCAGCTGGCCAACAA
TTATTTTCACTTGCAGCGCCTCCGGGCCAACCCTTGTTTTAATCTTTTTT
TTTTTGACAGCTGCTGGTGCCCCGGTTTCTGTGTGGCTCCTTGAAAGAGC
ACGTGTATGCTTGCTGTTGCTTGCATCGTTTAGTTCTCCCCCACCGTTTC
CCCTCCACGCTGCTGTAACAGCTCGGGTTCAAAATTTAAAGGGAAAGCTG
AGGTCTACATGCCGGTACCGCTCTCTTGGGGCAGCCTTCCGCGCGGATGC
CATA
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