mRNA_P-littoralis_Contig1007.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1007.6.1
Unique NamemRNA_P-littoralis_Contig1007.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1007.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1007contigP-littoralis_Contig1007:31880..32120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size228
Hectar predicted targeting categorymitochondrion
Exons2
Cds size207
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789346.5254128-UTR-P-littoralis_Contig1007:31879..319001680789346.5254128-UTR-P-littoralis_Contig1007:31879..31900Pylaiella littoralis U1_48UTRP-littoralis_Contig1007 31880..31900 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789346.5357459-CDS-P-littoralis_Contig1007:31900..320271680789346.5357459-CDS-P-littoralis_Contig1007:31900..32027Pylaiella littoralis U1_48CDSP-littoralis_Contig1007 31901..32027 +
1680789346.5455406-CDS-P-littoralis_Contig1007:32040..321201680789346.5455406-CDS-P-littoralis_Contig1007:32040..32120Pylaiella littoralis U1_48CDSP-littoralis_Contig1007 32041..32120 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1007.6.1prot_P-littoralis_Contig1007.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1007 31901..32120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1007.6.1

>prot_P-littoralis_Contig1007.6.1 ID=prot_P-littoralis_Contig1007.6.1|Name=mRNA_P-littoralis_Contig1007.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=69bp
MANRGAWARTRLSRKVCRVRAGLGGYGPPPGRAPPMYADYPEACTPTSHT
AHVEAVTCAERLVICKPLV
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mRNA from alignment at P-littoralis_Contig1007:31880..32120+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1007.6.1 ID=mRNA_P-littoralis_Contig1007.6.1|Name=mRNA_P-littoralis_Contig1007.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=241bp|location=Sequence derived from alignment at P-littoralis_Contig1007:31880..32120+ (Pylaiella littoralis U1_48)
GTGGGCGCGACAGCAGCAGCAATGGCGAACCGGGGAGCATGGGCCAGGAC
GAGGCTTTCCAGGAAGGTATGCAGAGTCCGGGCGGGGTTGGGGGGTTATG
GTCCTCCACCTGGACGTGCACCGCCCATGTATGCAGACTATCCTGAAGGC
TATGATGGAAGCGTGTACTCCGACCAGTCATACCGCTCACGTAGAAGCTG
TCACTTGTGCGGAGAGATTGGTCATCTGCAAGCCACTTGTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1007:31880..32120+

>mRNA_P-littoralis_Contig1007.6.1 ID=mRNA_P-littoralis_Contig1007.6.1|Name=mRNA_P-littoralis_Contig1007.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=207bp|location=Sequence derived from alignment at P-littoralis_Contig1007:31880..32120+ (Pylaiella littoralis U1_48)
ATGGCGAACCGGGGAGCATGGGCCAGGACGAGGCTTTCCAGGAAGGTATG
CAGAGTCCGGGCGGGGTTGGGGGGTTATGGTCCTCCACCTGGACGTGCAC
CGCCCATGTATGCAGACTATCCTGAAGCGTGTACTCCGACCAGTCATACC
GCTCACGTAGAAGCTGTCACTTGTGCGGAGAGATTGGTCATCTGCAAGCC
ACTTGTA
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