mRNA_P-littoralis_Contig1006.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1006.8.1
Unique NamemRNA_P-littoralis_Contig1006.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1006.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1006contigP-littoralis_Contig1006:29861..30328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size162
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size159
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789346.1091704-CDS-P-littoralis_Contig1006:29862..299561680789346.1091704-CDS-P-littoralis_Contig1006:29862..29956Pylaiella littoralis U1_48CDSP-littoralis_Contig1006 29863..29956 -
1680789346.1214209-CDS-P-littoralis_Contig1006:30263..303281680789346.1214209-CDS-P-littoralis_Contig1006:30263..30328Pylaiella littoralis U1_48CDSP-littoralis_Contig1006 30264..30328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1006.8.1prot_P-littoralis_Contig1006.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1006 29863..30328 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1006.8.1

>prot_P-littoralis_Contig1006.8.1 ID=prot_P-littoralis_Contig1006.8.1|Name=mRNA_P-littoralis_Contig1006.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=53bp
TSNACKKNALEQPQQLPGMMPSNLWTLSAQLDFANVEPSLVKLVRRCGGF
ALM
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mRNA from alignment at P-littoralis_Contig1006:29861..30328-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1006.8.1 ID=mRNA_P-littoralis_Contig1006.8.1|Name=mRNA_P-littoralis_Contig1006.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=468bp|location=Sequence derived from alignment at P-littoralis_Contig1006:29861..30328- (Pylaiella littoralis U1_48)
ACTTCGAACGCGTGCAAAAAGAATGCCTTGGAGCAACCGCAGCAGCTACC
GGGCATGATGCCGAGGTGAGCATAAAATATGAGGATCATTTTGTATTACT
TCGAAGTATATCCTATCATATTACATTTTAGCTTATCGCGTGATAACGTT
TGACTGCTGCACTACTGTTGTATTTGTGGTGCACCACTGCTGTGTGCATT
TACCGCTGCTGTATTCATGCATATCATATGATATAATATGATATCATACA
AGTACATACTCCGGAGTATATCATATGGACTCCCCAAGACGCCAACCTCC
ACTGTGTCTGTCGTGTTCTCTGTGCCCCTCGCCTACCTTTCGCCGCGCTT
GTTTGCCTCCCCTGTCCTACAGCAACCTCTGGACGTTGAGTGCGCAGCTG
GATTTTGCGAACGTTGAGCCCAGCCTAGTGAAGCTTGTTAGACGCTGCGG
GGGGTTCGCACTCATGCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1006:29861..30328-

>mRNA_P-littoralis_Contig1006.8.1 ID=mRNA_P-littoralis_Contig1006.8.1|Name=mRNA_P-littoralis_Contig1006.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=159bp|location=Sequence derived from alignment at P-littoralis_Contig1006:29861..30328- (Pylaiella littoralis U1_48)
ACTTCGAACGCGTGCAAAAAGAATGCCTTGGAGCAACCGCAGCAGCTACC
GGGCATGATGCCGAGCAACCTCTGGACGTTGAGTGCGCAGCTGGATTTTG
CGAACGTTGAGCCCAGCCTAGTGAAGCTTGTTAGACGCTGCGGGGGGTTC
GCACTCATG
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