mRNA_P-littoralis_Contig1006.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1006.7.1
Unique NamemRNA_P-littoralis_Contig1006.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1006.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1006contigP-littoralis_Contig1006:26846..28054 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size487
Hectar predicted targeting categoryother localisation
Exons2
Cds size330
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789346.2508802-UTR-P-littoralis_Contig1006:26845..269511680789346.2508802-UTR-P-littoralis_Contig1006:26845..26951Pylaiella littoralis U1_48UTRP-littoralis_Contig1006 26846..26951 -
1680789346.2903802-UTR-P-littoralis_Contig1006:28003..280541680789346.2903802-UTR-P-littoralis_Contig1006:28003..28054Pylaiella littoralis U1_48UTRP-littoralis_Contig1006 28004..28054 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789346.2676954-CDS-P-littoralis_Contig1006:26951..270951680789346.2676954-CDS-P-littoralis_Contig1006:26951..27095Pylaiella littoralis U1_48CDSP-littoralis_Contig1006 26952..27095 -
1680789346.278944-CDS-P-littoralis_Contig1006:27817..280031680789346.278944-CDS-P-littoralis_Contig1006:27817..28003Pylaiella littoralis U1_48CDSP-littoralis_Contig1006 27818..28003 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1006.7.1prot_P-littoralis_Contig1006.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1006 26952..28003 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1006.7.1

>prot_P-littoralis_Contig1006.7.1 ID=prot_P-littoralis_Contig1006.7.1|Name=mRNA_P-littoralis_Contig1006.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=110bp
MVLKISELETELGEIKDSLGGKADKAHPAAPGIARIDHSILIGKDSTQVR
SLVGVSSHYSLEKLYEFLDAEGAATHVVFYDKREGSGLKQTGERVSHRMA
FFAVSMVCF*
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mRNA from alignment at P-littoralis_Contig1006:26846..28054-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1006.7.1 ID=mRNA_P-littoralis_Contig1006.7.1|Name=mRNA_P-littoralis_Contig1006.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1209bp|location=Sequence derived from alignment at P-littoralis_Contig1006:26846..28054- (Pylaiella littoralis U1_48)
CTCTTGGAGGGAGCCACCGAGCGGCTGCACCTCCAACACAAAATCCAGCT
AATGGTGCTCAAAATCTCGGAGCTGGAGACGGAGTTGGGAGAGATCAAGG
ATAGTTTGGGGGGTAAGGCAGACAAAGCGCATCCCGCAGCACCTGGTATC
GCGAGGATCGATCACTCCATCCTTATCGGCAAGGATTCAACACAAGTTCG
TAGTCTTGTGGGAGTGAGCTCCCACTACTCTCTGGAGGTGAGATTCATGC
CACTGCTGTACAAGTAGCTGCAGCAGGAGCGTCGAACTGCGGTGGTAGGC
ATGCACAGCTCAGAGAACAGGAGAAGTCCTTACCTCAACCAAAACGGGGC
TTGTTCGCCCTTGTTCGCCCTTGATTCGTGCTGCCGGTAACATTTCAGGA
AAGTCACATTCATAAACTCGCCCCATTTTTGAAGTAAGACATCGCGTGAA
CATCCTCCCTCGTGTAAAAAGGGAACTTGTACAATCGTGTTTGAAAGGGT
AAGATAATGGGGAAAGGCTTGGCTCTCACTAGTGTAGAGTGCCTCGCATG
ACACATGAATACCATTACCATAATGCGCAAGCACCTTTCAGATTTTCGAT
TTTTAGAAGATCATCCCCACCGTGGTTTTTTGCTGTTTTTTTTTGCTGGA
TCTTCAGGGGTTACCTAGGCCGCCGCCGCAGCCGGTCCAACCCGTTCGCT
AACATGAGGCCCAGGGCTCGTTCTTTGGAGGCCGTGAAAATATTTGTGTT
CGTGAAATGCTACAGATCGACGTATGACGTACTCCCGACGGAGCCGATGC
CAGTATTGATTCCGTCGGGTATGTGAGCAAGGAGACTCCCTCATGCCCCC
CCCTTTGTATTTCGCCTGCGCTTCCTCACACGAATATGCTCAAGTACAGA
CGGCCGTCTGACCCGTTATTTTTATTGTGCGCGTGAACCCCCGTATTACT
TCCGAACAGAAGCTTTACGAATTTTTGGATGCAGAGGGCGCCGCGACACA
TGTGGTGTTTTACGACAAACGAGAGGGCAGCGGATTGAAACAAACTGGAG
AAAGGGTCAGCCATAGAATGGCGTTTTTCGCGGTATCAATGGTTTGTTTT
TGACGCTGATGGTGTTGCGCACTGCCGTTCCGCTGGTGGTGGCGTCGACC
CTCTTTGGAGTACACGAGACCACGGTAGGTAGAGCGTTCACGACATGGCT
AAATTTCCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1006:26846..28054-

>mRNA_P-littoralis_Contig1006.7.1 ID=mRNA_P-littoralis_Contig1006.7.1|Name=mRNA_P-littoralis_Contig1006.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=330bp|location=Sequence derived from alignment at P-littoralis_Contig1006:26846..28054- (Pylaiella littoralis U1_48)
ATGGTGCTCAAAATCTCGGAGCTGGAGACGGAGTTGGGAGAGATCAAGGA
TAGTTTGGGGGGTAAGGCAGACAAAGCGCATCCCGCAGCACCTGGTATCG
CGAGGATCGATCACTCCATCCTTATCGGCAAGGATTCAACACAAGTTCGT
AGTCTTGTGGGAGTGAGCTCCCACTACTCTCTGGAGAAGCTTTACGAATT
TTTGGATGCAGAGGGCGCCGCGACACATGTGGTGTTTTACGACAAACGAG
AGGGCAGCGGATTGAAACAAACTGGAGAAAGGGTCAGCCATAGAATGGCG
TTTTTCGCGGTATCAATGGTTTGTTTTTGA
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