mRNA_P-littoralis_Contig1006.11.1 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1006.11.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 7.530e-11 Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 2 Query: 182 RSHQLRAGTFKFGAFSQGDAEKSFAEFPVAFRHPVHGGPIFNMSDP 319
RS QLRA T +F AF+QGD E+SF+ FPVA RH VH GP+FN+SDP
Sbjct: 317 RSFQLRAATVEFSAFAQGDDEESFSNFPVALRHSVHLGPMFNVSDP 362
BLAST of mRNA_P-littoralis_Contig1006.11.1 vs. uniprot
Match: D8LK65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK65_ECTSI) HSP 1 Score: 51.2 bits (121), Expect = 2.920e-5 Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 2 Query: 182 RSHQLRAGTFKFGAFSQGDA--EKSFAEFPVAFRHPVHGGPIFNMSDP 319
RS Q F +++GD+ EK +F VAF+HP HGGP+FNMSDP
Sbjct: 120 RSFQKYLAEIAFSEWARGDSAFEKRMGDFKVAFKHPSHGGPVFNMSDP 167 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1006.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1006.11.1 >prot_P-littoralis_Contig1006.11.1 ID=prot_P-littoralis_Contig1006.11.1|Name=mRNA_P-littoralis_Contig1006.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=107bp LWSKNCAAVASGNARTAGGAGPRCAKCNEFWRVTVKPKILNFLSPAHKHTback to top mRNA from alignment at P-littoralis_Contig1006:38317..40107- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1006.11.1 ID=mRNA_P-littoralis_Contig1006.11.1|Name=mRNA_P-littoralis_Contig1006.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1791bp|location=Sequence derived from alignment at P-littoralis_Contig1006:38317..40107- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1006:38317..40107- >mRNA_P-littoralis_Contig1006.11.1 ID=mRNA_P-littoralis_Contig1006.11.1|Name=mRNA_P-littoralis_Contig1006.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=321bp|location=Sequence derived from alignment at P-littoralis_Contig1006:38317..40107- (Pylaiella littoralis U1_48)back to top |