mRNA_P-littoralis_Contig1006.10.1 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1006.10.1 vs. uniprot
Match: A0A6H5K201_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K201_9PHAE) HSP 1 Score: 105 bits (261), Expect = 1.120e-22 Identity = 65/117 (55.56%), Postives = 76/117 (64.96%), Query Frame = 1 Query: 7 AAGIQRGTINSRKEDLLDYLDEYVGEFRCDSGEGAGPNVTDIGLAGGRGGXXXXXXLGESNTSTGGGEMASTSCDSTRAE*SVEEGREHDGLLSRPIVRDLSLSILDGAGASTGGDS 357
AA I +GT+NSRK DLLDYL+ +V FR + GAGPNVT GL XXXXXX GE NT TG GEMAS D T E ++G +HD LSRPI D S S+L+GAG S+G S
Sbjct: 441 AAEIPKGTVNSRKADLLDYLETFVCGFRQEPVGGAGPNVTGTGLXXXXXXXXXXXXAGEGNTLTGSGEMASAGGDFTTEEVPTQDGMDHDDFLSRPIAMDFSRSVLEGAGVSSGSGS 557
BLAST of mRNA_P-littoralis_Contig1006.10.1 vs. uniprot
Match: A0A6H5K5B1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5B1_9PHAE) HSP 1 Score: 56.2 bits (134), Expect = 6.490e-6 Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 1 Query: 10 AGIQRGTINSRKEDLLDYLDEYVGEFRCDSGEGAGPNVTDIGLA 141
AGI++GT+NSR++DLLDYL YVG F +S EGAGP+ T G A
Sbjct: 271 AGIKKGTMNSRQDDLLDYLAAYVGGFGQESVEGAGPSATGSGPA 314 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1006.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1006.10.1 >prot_P-littoralis_Contig1006.10.1 ID=prot_P-littoralis_Contig1006.10.1|Name=mRNA_P-littoralis_Contig1006.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=83bp KNAAGIQRGTINSRKEDLLDYLDEYVGEFRCDSGEGAGPNVTDIGLAGGRback to top mRNA from alignment at P-littoralis_Contig1006:34791..35412+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1006.10.1 ID=mRNA_P-littoralis_Contig1006.10.1|Name=mRNA_P-littoralis_Contig1006.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=622bp|location=Sequence derived from alignment at P-littoralis_Contig1006:34791..35412+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1006:34791..35412+ >mRNA_P-littoralis_Contig1006.10.1 ID=mRNA_P-littoralis_Contig1006.10.1|Name=mRNA_P-littoralis_Contig1006.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=249bp|location=Sequence derived from alignment at P-littoralis_Contig1006:34791..35412+ (Pylaiella littoralis U1_48)back to top |