Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 0 |
| Model size | 491 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Cds size | 306 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789346.058816-UTR-P-littoralis_Contig1006:9078..9263 | 1680789346.058816-UTR-P-littoralis_Contig1006:9078..9263 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig1006 9079..9263 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789346.0708363-CDS-P-littoralis_Contig1006:9263..9324 | 1680789346.0708363-CDS-P-littoralis_Contig1006:9263..9324 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig1006 9264..9324 - |
| 1680789346.0795624-CDS-P-littoralis_Contig1006:12752..12997 | 1680789346.0795624-CDS-P-littoralis_Contig1006:12752..12997 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig1006 12753..12997 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1006.1.1 >prot_P-littoralis_Contig1006.1.1 ID=prot_P-littoralis_Contig1006.1.1|Name=mRNA_P-littoralis_Contig1006.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=102bp
QRQRQDRAAARASSVTLNNEKLLTHVSRQLCHICLPVSFTSAGTSVAVVF
LFSRSRAIGARLRRGSGRTPSSRESALLRHTRWYFGFRCPRQPTPMPTSK
W* back to topmRNA from alignment at P-littoralis_Contig1006:9079..12997- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig1006.1.1 ID=mRNA_P-littoralis_Contig1006.1.1|Name=mRNA_P-littoralis_Contig1006.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3919bp|location=Sequence derived from alignment at P-littoralis_Contig1006:9079..12997- (Pylaiella littoralis U1_48)
CAAAGACAGAGGCAGGATCGCGCAGCAGCACGAGCCTCTAGTGTCACTCT
GAACAACGAAAAGCTTCTCACACACGTGAGCAGACAGCTCTGCCACATCT
GCCTGCCGGTCAGCTTTACTTCTGCGGGAACTAGTGTTGCTGTCGTTTTT
CTTTTCAGCCGTTCAAGGGCCATCGGCGCGAGGCTACGACGTGGGAGCGG
CCGGACACCATCCAGCCGCGAGTCAGCCCTACTGCGCCACACTCGGTACG
AGCGACGCATGTAACATTGTTAGGACTGAAAGGAAAATCGCCTGTTGTGT
GGCTGTGCGCGGATACGCGCTTCGTATGCGGATAGGCACGGAGTAGGTAT
GGCTAGGGTTAGGGCCGAGCCTAAGGAGGCATATTATGCACATTACCATC
TGGTGGGCACACAGTAGAGCACCACGTTACACGCGCTGCCGGTGCAGCGT
AGACGCACGACGCACTACTGCGCAATACGTGCGTACGTCAACACAAGCTG
TCATCTCGTTACACATTTGACATGAGACCTGCCAGGAGGTAACGATACAC
AGCAGTGGATGTTCGCACATCGTATAAATGTCGACAGCCGTCGCACGCCG
GTCATCTAAAAACCGGGCGAACCCATACCAGAGATCACTGACACACGCAT
TGGGGCACAGCGTAGGGACGCTGCACGCGTTCTGTCGCTAACGGGCGCGC
GTGGCCATGGGTCTAATATATCGTCTCACATTTGTCAAGGGACATGTCAT
AGGGTACCACGATGCGATCATATGAGAGTTGAGACTGTCGTACGCCACAG
AGCGAGTTACCTTCATACCAACCCAGGTCGCCATTCGATAGACGCAAACC
CGTAATGATAGACGCACACCCATAATGAGGCTGCCGGCGCAGCACAGGTG
CAGATAGCCATAACGTAGTCCACTATCGCGCATTTCGCACTTGGTACGTA
CGAGGTACCGAATGCAGGTTCCGTAATGAGGTCACCAGGACATGGTCGGA
CGAAACAAAAACAAAAATGCGGGTCACCCAAATCCAACTTTGATCCGTGG
TACAGAGACCGCCGCCCGCACAATGGCGGAGAACCGAAGTTGTAGGCGTC
ATTCGACGCAGGGCCAACGATACTGTTACCATGAGCCACCACTGCTGTCC
GCTTGTTGCGCGATCCACGATATCATGTCGTGAGATCGCTCACACAACGG
TCAGAGAGGGCACATAGCAGCAGTAGTAGTCACATATATCGTTGCGCATA
CACGACGACTCGACAGTCAACGCTGTGAGGTCAACTACATTAACAATATA
CCGAAGTATATAATGCTTCGACTACAGGGTGTGAACCGGAGTTGCAGGCG
TCATTCGACGCAGGGTAAACTATGCTACTACCATGCGCCACCGCTGCTGT
CCGATTGTTGCGCGATCCACAACGTCCATGTAGTGAGTTCACGCACACAA
CGGGCAGGGAGGGCACGCAGTAGCGGTAATAGTCGCTTATATCGCTGCAC
ATTACACGACGATTTGCCAGTCAATGCCGTGAGGTCAACTACATCTATTC
TCAATATACCGAAGTATGTGATACTCCAACTCGTGGGTGTAGTCGACGTA
GTTGACCACACCGGAGAGAAAAATCCAGCAGTCTGAATCGAATAATAATA
CAAGGAGACGAGAGAAACAAACCCGGAGGTTTCGAGTTTAACACATGTAT
TAGAGGGTGTAGTCGACGTAGTCGACCACACAGGAAAAATTCAGCACAGC
TGAAGTCATGATATACCAAAATATATGATACTCTGACTCGAGGGTGTAGC
CGACGTCGTCGACTACACGGGAGAGGGGAAAAACAAAATTCAGCGGGTCT
GAACCGAAAAGATAAGACAACGAGACGAGGGACGCCAACCCGGGGGTTCG
AGTTCAACGCATGTATTATAGGATGTAGTCGACGCAGTCGACTATAGGGT
GTAGTCGACGTAGTCGACCACACAGGGTAAATTCAGCGAAGCTGAAATAA
AGATATACCAAAGGATATGATACTCCGACTCGAGGGTGCAGCCGACGTAG
TCGACCACACGGGAGAGGGGAAACACTAAAATTCAGCGGGCTGAACCGAA
AGATAATACAAAGAGACGAGAGAAACAAACCCGGGGGTTTCGAGTACAAC
GCATGTATTATAGGGTGTAGTCGACTCAGTCGACCACAAAGGGGAAATTC
AGCAAGGCTGAAACGGAAGATAATACAAAGAGAAAAACGAACCCGGCGGT
TCTCGCATACAACACACGTATTATCCCGCCCGCATCACACACCGGTGATA
TCAGGCGATGGCACTTCCAACGTAGTGTCAAAAAGGGCGAGTTCCTCGCA
GGTGCGAGAAGCAGGTTTTGCCCACATCCTCGCGTCCCGTAGTTTTGCCA
CGGTAACCGCGAGAGTAACATAACGCGTGCGATATACAGCGAAGTTCGGA
CAAATCCGCATGTCTGCGCATTACGGAAAACCCCGCGTCGTTGTCGCGGT
GCACTCCGCACAATTACGATATCAAGAGGCCGGCGCCTCGACCGACGTAG
TGCCACCAATGTCGTTTTGTTTTGTTTTACGTTGTCGCGGTGCACTCCGC
ACAATTACGATGTCAAGAGGCCGGCGCCTCGACCGAAGTGGTGCCACCAA
TGTCGTTTTGTTTTGTTTTTCGCAAGGGTGGAAAATCGGTATGGCCCATA
AAAATTCGCGTAACACCATCTGCTGTCGCTGTCATACGTACCCATGACCA
TTGGCCGGCGCCCAAAACCTCAATAGTACCAGCAGGGCCGCGGTTCTCAC
AAGTATGGAAAATAGGTTCGGCACGTAGTTCTGCGTACCACGAGAACGAA
GACAAACATACATATGGCACCGAAATTAGGGTCTGTTAAAGCAGGAACAG
CACCGTTTACTCGAAGTCCCCACCGGCGTGGTGGTAGAATATACAGGATT
TTCGATTCGGCTTGGAGAACCGGCCCCGCGGCGTGGAGACACGCGCACGG
GATAAGTAAGTTGTCAGGTGCAGCTATGGTCCCATTCTTATGTCACGATT
GCGAACCCACCTGTCTGGTTTTAATTTGGCGATGAATTTGTATTTTCCCA
AGAGGTTTTTTTTCTTTTCGGAGCCAACATTACTATCAGAGAGAGGAGTC
GCAACCATGAGCTTTGAACACTGCAGCAGGCACGTATACACGGAATCGTA
CGGCACACACCTATCGCACATACGTCACGCCGTAGGCACTGCTGGAGCAG
ATACGGTGCGATACCAAGGTCGCACCCAGCCTGTATACAGCAGTTGCACA
AACACCGCATGTTAGTACGGGCGAAGTGCCCAGGGTGATCCAGGGTAGGT
AGCGGGGAATGCGCACTTATCCTCAATTCCATGCGAAATATGCCGGCGCA
TGCTGATCGGGCTACGGGGGTAAATAAAAGCACCGGCGGGGCGTGAGTGA
TCGGTATCACTCACGAAGAAATATAGTGACGGGGTGTGGGTGCAACATAT
GCCACCCACGGTTAAAGGCGTCGAACGTGCCGGAGCACGAGGTCGTCTCG
CGTTAACCAGGCCCGCTGCTATGTTCCACCTTCAATCATTGCTGACCCCG
CCCCTCCGCGGTACCCTGCCACCCCCCCCCACCCCTTTGGACACGATCAT
CGGATTCATCGAATAAATTCCAGGTGGTATTTCGGTTTCCGATGTCCCCG
CCAGCCGACTCCGATGCCGACGTCCAAGTGGTGACGAGAGCTGAGTTCGA
GCTGCAGGTGCAAGCCGGAGAAAACGAGCGCTCTCACCTGTCGGCGGAGG
TGGCGGACCTCCAAACCTCGCTCGAGGCCAAGCTGGCCACGGTCCTCACC
ACTCTCCAGCAAGTGCAGCAGGCGCATCTGGGCGGGGCCCACGGCGGCAC
CCAGGTAGCCGGCCACGCC back to topCoding sequence (CDS) from alignment at P-littoralis_Contig1006:9079..12997- >mRNA_P-littoralis_Contig1006.1.1 ID=mRNA_P-littoralis_Contig1006.1.1|Name=mRNA_P-littoralis_Contig1006.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=306bp|location=Sequence derived from alignment at P-littoralis_Contig1006:9079..12997- (Pylaiella littoralis U1_48)
CAAAGACAGAGGCAGGATCGCGCAGCAGCACGAGCCTCTAGTGTCACTCT
GAACAACGAAAAGCTTCTCACACACGTGAGCAGACAGCTCTGCCACATCT
GCCTGCCGGTCAGCTTTACTTCTGCGGGAACTAGTGTTGCTGTCGTTTTT
CTTTTCAGCCGTTCAAGGGCCATCGGCGCGAGGCTACGACGTGGGAGCGG
CCGGACACCATCCAGCCGCGAGTCAGCCCTACTGCGCCACACTCGGTGGT
ATTTCGGTTTCCGATGTCCCCGCCAGCCGACTCCGATGCCGACGTCCAAG
TGGTGA back to top
|