mRNA_P-littoralis_Contig1005.7.1 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1005.7.1 vs. uniprot
Match: A0A6H5JFU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU5_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 3.680e-10 Identity = 77/249 (30.92%), Postives = 109/249 (43.78%), Query Frame = 2 Query: 1868 KRRIKIEKNDKCKGLYEGGNNAGDRCRALAKADNNGYCGRHTSQHDRSTAKKRKSRPSRGPGSGAAEELKDPVGDEYQSDGGSEGELPGDLADYEEDGEVQVALGKGNAAVQARALA-KIPERWGRESLKCMFRLVQATAQMERNRDVKKAAREEAERESPLFAALREAKLLPREDGEGIKDKEVDKGKGA-TVKMEHPRPQHWSCVGISDGEDMDWV--WDGETFEVVGLESYGGGLGRGMDLVWKGA 2602
K+R K + C + G G+ C A K+ +C H+ Q R R + G AE ++ G+ SDGGSEGE PGD ADY++D G + Q A+ KI E WG+E+L +F L+Q T Q+ ++R+ KK AR E + ++P EG E KG A EH W+ G+ D+DW +DG G ++ G G D W GA
Sbjct: 363 KKRGKRGRRSTCTSTFASGPKQGEPCGAEEKSPCGMFCIMHSRQGSRDRTCGRGGKG----GDDEAEYEQEAEGNHDMSDGGSEGEFPGDAADYDQD-----VFVSGKSPQQVNAMVDKIQEAWGKEALTFIFGLMQNTKQLVQDRNKKKKARSEVKEDAP----------------EGGDTGEEQKGDEALNTADEHS----WTTRGVKT--DVDWSARYDGGLSG--GRDARSGARGGNCDSTWSGA 578
BLAST of mRNA_P-littoralis_Contig1005.7.1 vs. uniprot
Match: D7G347_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G347_ECTSI) HSP 1 Score: 70.1 bits (170), Expect = 8.420e-10 Identity = 52/138 (37.68%), Postives = 69/138 (50.00%), Query Frame = 2 Query: 1868 KRRIKIEKNDKCKGLYEGGNNAGDRCRALAKADNNGYCGRHTSQHDRSTAKKRKSRPSRGPGSGAAEELKDPVGDEYQSDGGSEGELPGDLADYEEDGEVQVALGKGNAAVQARALAKIPERWGRESLKCMFRLVQAT 2281
K+ K ++ + C L+ G G RC A AK+ CG S + + R G E +++P GDE SDGGS+GE PGDLADY+E + + NA V KIPE WG +LK +F LVQ T
Sbjct: 50 KKHGKRKRRETCNPLFASGKRQGQRCGAEAKSP----CGTLCSMRSKKGGENRTCGRGGNGGDDETEYVQEPEGDEEMSDGGSDGEFPGDLADYDEPSVTIKSPQQINAMVD-----KIPEGWGMAALKFVFELVQHT 178
BLAST of mRNA_P-littoralis_Contig1005.7.1 vs. uniprot
Match: D7FZ42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ42_ECTSI) HSP 1 Score: 72.0 bits (175), Expect = 3.030e-9 Identity = 52/138 (37.68%), Postives = 70/138 (50.72%), Query Frame = 2 Query: 1868 KRRIKIEKNDKCKGLYEGGNNAGDRCRALAKADNNGYCGRHTSQHDRSTAKKRKSRPSRGPGSGAAEELKDPVGDEYQSDGGSEGELPGDLADYEEDGEVQVALGKGNAAVQARALAKIPERWGRESLKCMFRLVQAT 2281
K+ K ++ + C L+ G RC A AK+ CG S H + + R G E +++P GDE SDGGS+GE PGDLADY+E + + NA V KIPE WG+ +LK +F LVQ T
Sbjct: 385 KKHGKRKRRETCNALFASGKRQRQRCGAEAKSP----CGTLCSMHSKKGGQNRTCGRGGNGGDDETEYVQEPEGDEEMSDGGSDGEFPGDLADYDEPSVTIKSPQQINAMVD-----KIPEGWGKAALKFVFELVQHT 513
BLAST of mRNA_P-littoralis_Contig1005.7.1 vs. uniprot
Match: A0A6H5JFP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFP3_9PHAE) HSP 1 Score: 69.3 bits (168), Expect = 1.870e-8 Identity = 54/152 (35.53%), Postives = 77/152 (50.66%), Query Frame = 2 Query: 1868 KRRIKIEKNDKCKGLYEGGNNAGDRCRALAKADNNGYCGRHTSQHDRSTAKKRKSRPSRGPGSGAAEELKDPVGDEYQSDGGSEGELPGDLADYEEDGEVQVALGKGNAAVQARALA-KIPERWGRESLKCMFRLVQATAQMERNRDVKKAA 2320
K+R K + C + G G C A AK+ +C H+ Q RS R + G AE ++ GD+ SDGGSEGE PGD DY++D G + Q +A+ KI E WG+E+L +F LVQ T Q+ ++R+V+ A
Sbjct: 347 KQRGKRGRRSTCTATFASGPKQGGPCGAEAKSPCGMFCNEHSRQGSRSRTCGRGGKG----GDDEAEYEQELEGDDDMSDGGSEGEFPGDAVDYDQD-----VFVSGKSPQQVKAMVDKIQEAWGKEALAFIFGLVQNTKQLVQDRNVRMGA 489
BLAST of mRNA_P-littoralis_Contig1005.7.1 vs. uniprot
Match: A0A6H5L3T1_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3T1_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 5.600e-8 Identity = 63/182 (34.62%), Postives = 84/182 (46.15%), Query Frame = 2 Query: 2051 GSGAAEELKDPVGDEYQSDGG---SEGELPGDLADYEEDGEVQVALGKGNAAVQARALA-KIPERWGRESLKCMFRLVQATAQMERNRDVKKAAREEAERESPLFAALREAKLLPREDGEGIKDKEVDKGKGATVKMEHPRPQHWSCVGISDGEDMDWVWDGETFEVVGLESYGGGLGRGMD 2584
G AE ++P GD+ SDGG SEGE PGD ADY++D GN+ Q +A+ KI E WG E+L +F LVQ T Q+ ++R+ KK AR E E ++P EG E KG A ++ W+ G+ D+DW Y GGL G D
Sbjct: 225 GDDEAEYEQEPEGDDDMSDGGGEGSEGEFPGDAADYDQD-----VFVSGNSPQQVKAMVDKIQEAWGNEALTFIFGLVQNTKQLVQDRNKKKKARSEVEEDAP----------------EGGDTGEEQKGDEA---LDTADEHSWTTRGMKT--DVDWS-----------ARYDGGLSGGHD 369
BLAST of mRNA_P-littoralis_Contig1005.7.1 vs. uniprot
Match: A0A6H5K8V2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8V2_9PHAE) HSP 1 Score: 65.9 bits (159), Expect = 2.870e-7 Identity = 53/147 (36.05%), Postives = 74/147 (50.34%), Query Frame = 2 Query: 1895 DKCKGLYEGGNNAGDRCRALAKADNNGYCGRHTSQHDRSTAKKRKSRPSRGPGSGA------AEELKDPVGDEYQSDGGSEGELPGDLADYEEDGEVQVALGKGNAAVQARALA-KIPERWGRESLKCMFRLVQATAQMERNRDVKK 2314
D C + G G C A AK+ +C +H+ Q RS R GSG AE ++P GD+ DGGSEG +PGD ADY++D G + Q +A+ KI E WG+E+L +F LVQ T Q ++R+ +K
Sbjct: 265 DTCTATFASGPKQGKPCGAEAKSPCGMFCNKHSRQGSRS----------RTCGSGGKGGDDEAEYEQEPEGDDDMRDGGSEGWIPGDAADYDQD-----VFVSGKSPQQVKAMVDKIEEAWGKEALNFIFGLVQNTNQFVQDREEQK 396
BLAST of mRNA_P-littoralis_Contig1005.7.1 vs. uniprot
Match: A0A6H5K3B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3B3_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 3.220e-6 Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 2 Query: 2051 GSGAAEELKDPVGDEYQSDGGSEGELPGDLADYEEDGEVQVALGKGNAAVQARALA-KIPERWGRESLKCMFRLVQATAQMERNRDVKKAA 2320
G AE ++P GD+ SDGGSEGE PGD ADY++D G + Q +A+ KI E WG+E+L +F L Q T Q+ ++R+V+ A
Sbjct: 351 GDDEAEYEQEPEGDDDMSDGGSEGEFPGDAADYDQD-----VFVSGKSPQQVKAMVDKIQEAWGKEALTFIFGLAQNTKQLVQDRNVRMGA 436
BLAST of mRNA_P-littoralis_Contig1005.7.1 vs. uniprot
Match: A0A6H5KVH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVH8_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 1.220e-5 Identity = 55/169 (32.54%), Postives = 77/169 (45.56%), Query Frame = 2 Query: 2078 DPVGDEYQSDGGSEGELPGDLADYEEDGEVQVALGKGNAAVQARALAKIPERWGRESLKCMFRLVQATAQMERNRDVKKAAREEAERESPLFAALREAKLLPREDGEGIKDKEVDKGKGATVKMEHPRPQHWSCVGISDGEDMDWVWDGETFEVVGLESYGGGLGRGMD 2584
DP GDE SDGGS+GE PGDLADY+E + + NA V KIPE WG+ +LK +F VQ +R K A+ + +++P +G G + +E +G EH W G+ D D +DG + G ++ GG G D
Sbjct: 584 DPEGDEEMSDGGSDGEFPGDLADYDEPSVTIKSPQQINAMVY-----KIPEGWGKAALKFVFEFVQHIHDFRNDRKKKNMAKSKVHQDAP--------------EGGGEEGEEEKGEEGLDTADEHV----WITRGMKDA-DRTAGYDGG--QCSGKDARGGDSGGDCD 726
BLAST of mRNA_P-littoralis_Contig1005.7.1 vs. uniprot
Match: A0A6H5JIB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB8_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 1.710e-5 Identity = 59/194 (30.41%), Postives = 88/194 (45.36%), Query Frame = 2 Query: 1880 KIEKNDKCKGLYEGGNNAGDRCRALAKADNNGYCGRHTSQHDRSTA-------------KKRK---------SRPSRGPGSGA-----------AEELKDPVGDEYQSDGGSEGELPGDLADYEEDGEVQVALGKGNAAVQARALA-KIPERWGRESLKCMFRLVQATAQMERNRDVKKAAREEAERESPLFAA 2359
K + C + G G+ C A AK+ +C +H+ Q RS K+R+ S P +G GA AE ++P GD+ SDGGSEGE PGD ADY++D G + Q +A+ KI E W +E+L +F LVQ T Q+ ++R+ A R+ ++ + A
Sbjct: 407 KRRRRSTCTAKFASGPKQGEPCGAEAKSPCGMFCKKHSRQGIRSQGGGAGVAPSKMKLGKRRRRSTCTAKFASGPKQGEPCGAEAKSPCGGDDEAEYEQEPEGDDDMSDGGSEGEFPGDAADYDQD-----VFVSGKSPQQVKAMVDKIQEAWAKEALTFIFGLVQNTKQLVQDRNYWTATRQYVRKKGEMVLA 595
BLAST of mRNA_P-littoralis_Contig1005.7.1 vs. uniprot
Match: A0A6H5K9N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9N7_9PHAE) HSP 1 Score: 58.5 bits (140), Expect = 4.990e-5 Identity = 38/99 (38.38%), Postives = 54/99 (54.55%), Query Frame = 2 Query: 2051 GSGAAEELKDPVGDEYQSDGGSEGELPGDLADYEEDGEVQVALGKGNAAVQARALAKIPERWGRESLKCMFRLVQATAQMERNRDVKKAAREEAERESP 2347
G E ++DP GDE SDGGS+GE PG LA+Y+E + + NA V KIPE WG+ +L+ +F LVQ T R K + + +++P
Sbjct: 303 GDNETEYVQDPEGDEDMSDGGSDGEFPGGLANYDEPSVTIKSPQQINAMVD-----KIPEGWGKPALRFVFELVQHTHDFRNGRKKKNMTKSKVHKDAP 396 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1005.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1005.7.1 >prot_P-littoralis_Contig1005.7.1 ID=prot_P-littoralis_Contig1005.7.1|Name=mRNA_P-littoralis_Contig1005.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=792bp MEEGEDVWSGKGSSSTAVRGEHFAAEKGRLLYEYLQSAKPGSLELSRDEVback to top mRNA from alignment at P-littoralis_Contig1005:28565..31861+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1005.7.1 ID=mRNA_P-littoralis_Contig1005.7.1|Name=mRNA_P-littoralis_Contig1005.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3297bp|location=Sequence derived from alignment at P-littoralis_Contig1005:28565..31861+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1005:28565..31861+ >mRNA_P-littoralis_Contig1005.7.1 ID=mRNA_P-littoralis_Contig1005.7.1|Name=mRNA_P-littoralis_Contig1005.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2376bp|location=Sequence derived from alignment at P-littoralis_Contig1005:28565..31861+ (Pylaiella littoralis U1_48)back to top |