mRNA_P-littoralis_Contig1005.16.1 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1005.16.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE) HSP 1 Score: 447 bits (1151), Expect = 4.810e-142 Identity = 226/261 (86.59%), Postives = 233/261 (89.27%), Query Frame = 1 Query: 1 DQRGFIELLPRARDGQLCDEDWDLLLKRQPNRLTAAEKADFEDATRLFYSKKEVNMYNGKRLRELDNPVARVSAVHTNANARRAGRQETPRRGWRGIST*PRERRLCLSKNLYQQVGLMNGIRGEVVELVYADDAPPPKLPLYVVVKFKGYSGGDWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLTLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRLKRLVDLMVEPTSFDRIGNLGNSSTMKARLQEEV 783 DQRGFIELLPRARDGQLCDEDWDLLLKRQPNRLTAAEKA FEDATRLFYSKKEVN YNGK+LRELDNPVARVSAVHT ANARRA G + ++ LSKNLYQQVGL+NGIRGEVVELV ADDAPPPKLPLYVVVKF+GYSGG+WSSQERYRRCVPISPVDTTWQDGGTQVRTQLPL LCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSR KRLVDLMVEP SFDRIGNLGNS TMKARLQEE Sbjct: 1311 DQRGFIELLPRARDGQLCDEDWDLLLKRQPNRLTAAEKAAFEDATRLFYSKKEVNKYNGKKLRELDNPVARVSAVHTGANARRATADTAE--GLERDLYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEA 1569
BLAST of mRNA_P-littoralis_Contig1005.16.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE) HSP 1 Score: 373 bits (958), Expect = 7.760e-128 Identity = 191/224 (85.27%), Postives = 198/224 (88.39%), Query Frame = 1 Query: 139 LFYSKKEVNMYNGKRLRELDNPVARVSAVHTNANARRAGRQETPRRGWRGIST*PRERRLCLSKNLYQQVGLMNGIRGEVVELVYADDAPPPKLPLYVVVKFKGYSGGDWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLTLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRLKRLVDLMVEPTSFDRIGNLGNSSTMKARLQEEVRLGELAQST 810 LFYSKKEVN YNGK+LRELDNPVARVSAVHT ANARRA G + ++ LSKNLYQQVGL+NGIRGEVVELV ADDAPPPKLPLYVVVKF+GYSGG+WSSQERYRRCVPISPVDTTWQDGGTQVRTQLPL LCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSR KRLVDLMVEP SFDRIGNLGNS TMKARLQEEVRLGELAQST Sbjct: 52 LFYSKKEVNKYNGKKLRELDNPVARVSAVHTGANARRATADTAE--GLERDLYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 273
BLAST of mRNA_P-littoralis_Contig1005.16.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE) HSP 1 Score: 318 bits (815), Expect = 1.090e-103 Identity = 155/166 (93.37%), Postives = 160/166 (96.39%), Query Frame = 1 Query: 313 RLCLSKNLYQQVGLMNGIRGEVVELVYADDAPPPKLPLYVVVKFKGYSGGDWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLTLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRLKRLVDLMVEPTSFDRIGNLGNSSTMKARLQEEVRLGELAQST 810 ++ LSKNLYQQVGL+NGIRGEVVELV ADDAPPPKLPLYVVVKF+GYSGG+WSSQERYRRCVPISPVDTTWQDGGTQVRTQLPL LCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSR KRLVDLMVEP SFDRIGNLGNS TMKARLQEEVRLGELAQST Sbjct: 282 KVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 447
BLAST of mRNA_P-littoralis_Contig1005.16.1 vs. uniprot
Match: A0A6H5J8Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Y8_9PHAE) HSP 1 Score: 321 bits (822), Expect = 3.730e-103 Identity = 182/270 (67.41%), Postives = 186/270 (68.89%), Query Frame = 1 Query: 1 DQRGFIELLPRARDGQLCDEDWDLLLKRQPNRLTAAEKADFEDATRLFYSKKEVNMYNGKRLRELDNPVARVSAVHTNANARRAGRQETPRRGWRGIST*PRERRLCLSKNLYQQVGLMNGIRGEVVELVYADDAPPPKLPLYVVVKFKGYSGGDWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLTLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRLKRLVDLMVEPTSFDRIGNLGNSSTMKARLQEEVRLGELAQST 810 DQRGFIELLPRARDGQLCDEDWDLLLKRQPNRLTAAEKA FEDATRLFYSKKEVN YNGK+LRELDNPVARVSAVHT ANARRA G + ++ LSKNLYQQVGL DGGTQVRTQLPL LCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSR KRLVDLMVEP SFDRIGNLGNS TMKARLQEEVRLGELAQST Sbjct: 234 DQRGFIELLPRARDGQLCDEDWDLLLKRQPNRLTAAEKAAFEDATRLFYSKKEVNKYNGKKLRELDNPVARVSAVHTGANARRATADTAE--GLERDLYLAKGAKVMLSKNLYQQVGL----------------------------------------------------------DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 443
BLAST of mRNA_P-littoralis_Contig1005.16.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE) HSP 1 Score: 317 bits (812), Expect = 5.470e-103 Identity = 155/163 (95.09%), Postives = 158/163 (96.93%), Query Frame = 1 Query: 322 LSKNLYQQVGLMNGIRGEVVELVYADDAPPPKLPLYVVVKFKGYSGGDWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLTLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRLKRLVDLMVEPTSFDRIGNLGNSSTMKARLQEEVRLGELAQST 810 LSKNLYQQVGL+NGIRGEVVELV ADDAPPPKLPLYVVVKF+GYSGG+WSSQERYRRCVPISPVDTTWQDGGTQVRTQLPL LCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSR KRLVDLMVEP SFDRIGNLGNS TMKARLQEEVRLGELAQST Sbjct: 2 LSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 164
BLAST of mRNA_P-littoralis_Contig1005.16.1 vs. uniprot
Match: UPI00077A236B (ATP-dependent DNA helicase PIF1-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A236B) HSP 1 Score: 195 bits (496), Expect = 5.050e-57 Identity = 111/271 (40.96%), Postives = 163/271 (60.15%), Query Frame = 1 Query: 1 DQRGFIELLPRARDGQLCDEDWDLLLKRQPNRLTAAEKADFEDATRLFYSKKEVNMYNGKRLRELDNPVARVSAVHTNANARRAGRQETPRRGWRGIST*PRERRLCLSKNLYQQVGLMNGIRGEVVELVYADDAPPPKLPLYVVVKFKGYSGGDWSSQERYRRCVPISPVDTTWQD-GGTQVRTQLPLTLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRLKRLVDLMVEPTSFDRIGNLGNSSTMKARLQEEVRLGELAQST 810 +Q F LL R R G +EDW LLL RQP+ + + F+DATRL+YS EV YN ++L +L P+A ++A H++A A+ +E + ++ L+ NL+ VGL NG G +++L+Y + PP LP+ V+V F YSG S + CVPI PV + Q G R QLPL L +A+T+HKSQG T++KA ID+G E G+++V +SR+K L +VEP +F+R+ +L +S+T+K RL EE RL +LA +T Sbjct: 85 EQEQFRNLLLRLRKGDSTNEDWQLLLTRQPSNIK--NLSQFDDATRLYYSNIEVATYNHEQLTKLQQPIANINARHSSAIAKNISSEEMS--NLEPTVFLAKGAKVMLTMNLWSSVGLCNGATGTILDLIYESNHQPPDLPIAVIVHFNDYSGP--SISDTLPSCVPICPVTVSIQSLDGHHERQQLPLKLAYALTIHKSQGLTMSKAWIDIGKSEKTPGVSYVAISRVKTLSSCVVEPMTFERLTSLKSSATLKYRLDEEARLDKLAHAT 349
BLAST of mRNA_P-littoralis_Contig1005.16.1 vs. uniprot
Match: UPI00077A905F (ATP-dependent DNA helicase PIF1-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A905F) HSP 1 Score: 197 bits (501), Expect = 4.610e-56 Identity = 112/271 (41.33%), Postives = 162/271 (59.78%), Query Frame = 1 Query: 1 DQRGFIELLPRARDGQLCDEDWDLLLKRQPNRLTAAEKADFEDATRLFYSKKEVNMYNGKRLRELDNPVARVSAVHTNANARRAGRQETPRRGWRGIST*PRERRLCLSKNLYQQVGLMNGIRGEVVELVYADDAPPPKLPLYVVVKFKGYSGGDWSSQERYRRCVPISPVDTTWQD-GGTQVRTQLPLTLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRLKRLVDLMVEPTSFDRIGNLGNSSTMKARLQEEVRLGELAQST 810 +Q F ELL R G ++DW LLL RQP A +F+DATRL++S +EV YN ++L L +P+A V+A H++ A++A E G + + L+ NL+ VGL NG G V++ +YA++ PP LP V+VKF Y G S E CVPI P+ + Q G R QLPL L WAIT+HKSQG TL KA ID+G E G+++V +SR++ L ++EP +F+R+ ++ S+++K R++EE RL ELA+ T Sbjct: 262 EQSQFRELLTRLHTGDCTEQDWKLLLTRQPTN--APNLVEFQDATRLYFSNEEVANYNVEKLSALQHPIACVNAHHSSDLAKKASPDEMA--GLEPCIFLAKGAHVMLTLNLWTAVGLCNGATGTVIDFIYANNQQPPDLPEAVIVKFDNYRGP--SITESISSCVPICPITVSSQTLDGLHERQQLPLKLAWAITIHKSQGLTLPKAWIDIGQTERTAGISYVAISRVRTLSSCIIEPMTFERLKSIKKSASLKFRIEEEERLNELAEQT 526
BLAST of mRNA_P-littoralis_Contig1005.16.1 vs. uniprot
Match: A0A6S7JIW3_PARCT (ATP-dependent DNA helicase n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JIW3_PARCT) HSP 1 Score: 200 bits (509), Expect = 7.150e-55 Identity = 116/271 (42.80%), Postives = 160/271 (59.04%), Query Frame = 1 Query: 1 DQRGFIELLPRARDGQLCDEDWDLLLKRQPNRLTAAEKADFEDATRLFYSKKEVNMYNGKRLRELDNPVARVSAVHTNANARRAGRQETPRRGWRGIST*PRERRLCLSKNLYQQVGLMNGIRGEVVELVYADDAPPPKLPLYVVVKFKGYSGGDWSSQERYRRCVPISPVDTTWQ-DGGTQVRTQLPLTLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRLKRLVDLMVEPTSFDRIGNLGNSSTMKARLQEEVRLGELAQST 810 DQ F +L R R G+L DW LLL RQP L+ DF DATRL+YS EV +N L +L+ P+A + A H+ +NA+ QE G + + ++ L+ NL+ VGL NG G +V+++YA D PP LP+ V+VKF Y G ++ S CVPI PV + D T R QLPLTL WA+T+HKSQG TL KA +D+G KE G+T+V LSR + L L++EP ++DR+ ++ ++ RLQEE RL +A T Sbjct: 852 DQTLFKGILSRLRIGELSCNDWKLLLARQPTVLSNLN--DFIDATRLYYSNDEVAKFNYDHLMQLETPIAEICARHSGSNAKSVSAQEMF--GLQPTILICKGAKVMLTMNLWASVGLCNGASGTIVDIIYAKDHHPPDLPIAVLVKFDEYRGPNFCS---IPFCVPIPPVTASVNIDNKTLERQQLPLTLAWALTIHKSQGMTLEKAWVDIGKKECTLGITYVALSRARNLTSLVIEPMTYDRLSSIKKMQSLSYRLQEEKRLQVIANLT 1115
BLAST of mRNA_P-littoralis_Contig1005.16.1 vs. uniprot
Match: UPI00109BC70A (uncharacterized protein LOC110236158 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BC70A) HSP 1 Score: 199 bits (507), Expect = 1.550e-54 Identity = 111/270 (41.11%), Postives = 163/270 (60.37%), Query Frame = 1 Query: 1 DQRGFIELLPRARDGQLCDEDWDLLLKRQPNRLTAAEKADFEDATRLFYSKKEVNMYNGKRLRELDNPVARVSAVHTNANARRAGRQETPRRGWRGIST*PRERRLCLSKNLYQQVGLMNGIRGEVVELVYADDAPPPKLPLYVVVKFKGYSGGDWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLTLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRLKRLVDLMVEPTSFDRIGNLGNSSTMKARLQEEVRLGELAQST 810 +QR F +LL R+G + DW++LL RQP +T + +F+D TRLFYS +EV YN +L EL +P+A++ A H+ A++ QE G + + + L+ NL+ VGL NG +G V++++Y D PP LP+ VVVKF+ YSG S + + CVPI P+ T D R Q+PL L WA+T+HKSQG TL K ID+G +E G ++V +SR ++L L++EP + +R+ N+ S MK R EE RL +LA +T Sbjct: 1471 EQRIFRDLLKHIRNGCISTSDWNVLLTRQPTSITNLD--EFKDVTRLFYSNEEVGKYNFSKLEELKHPIAKIEARHSTIKAKKISPQELF--GLEPLLFLAKGAVVMLTNNLWTSVGLCNGAKGTVMDIIYHPDHKPPSLPIAVVVKFESYSG---PSLDNFPSCVPIPPI-TACVDS-IHERQQIPLRLAWALTIHKSQGLTLDKTWIDIGKRETSLGTSYVAISRTRKLSSLVIEPMTLERLLNINKSPNMKYRKAEEQRLSDLANNT 1731
BLAST of mRNA_P-littoralis_Contig1005.16.1 vs. uniprot
Match: A0A6H5KSF1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF1_9PHAE) HSP 1 Score: 180 bits (457), Expect = 2.740e-54 Identity = 90/95 (94.74%), Postives = 91/95 (95.79%), Query Frame = 1 Query: 526 QDGGTQVRTQLPLTLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRLKRLVDLMVEPTSFDRIGNLGNSSTMKARLQEEVRLGELAQST 810 +DGGTQVRTQLPL LCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSR KRLVDLMVEP SFDRIGNLGNS TMKARLQEEVRLGELAQST Sbjct: 8 EDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 102 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1005.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1005.16.1 >prot_P-littoralis_Contig1005.16.1 ID=prot_P-littoralis_Contig1005.16.1|Name=mRNA_P-littoralis_Contig1005.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=152bp MNGIRGEVVELVYADDAPPPKLPLYVVVKFKGYSGGDWSSQERYRRCVPIback to top mRNA from alignment at P-littoralis_Contig1005:72606..73415- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1005.16.1 ID=mRNA_P-littoralis_Contig1005.16.1|Name=mRNA_P-littoralis_Contig1005.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=810bp|location=Sequence derived from alignment at P-littoralis_Contig1005:72606..73415- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1005:72606..73415- >mRNA_P-littoralis_Contig1005.16.1 ID=mRNA_P-littoralis_Contig1005.16.1|Name=mRNA_P-littoralis_Contig1005.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=456bp|location=Sequence derived from alignment at P-littoralis_Contig1005:72606..73415- (Pylaiella littoralis U1_48)back to top |