mRNA_P-littoralis_Contig1005.14.1 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1005.14.1 vs. uniprot
Match: A0A6H5JXC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC7_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 1.990e-17 Identity = 48/106 (45.28%), Postives = 60/106 (56.60%), Query Frame = 1 Query: 133 RTREFAPAACRVVGSLYCECVGEPQPMKDFTQREERRVAARQHPGTCGVAMAGLIAAVETEDVRQTASRRQQEATFKSFRNQACYDAARALNVRGAGVQVRRNRCF 450 R RE AA VG+ YC P P+ D ++ ER+ AA+QH G CG A IA ++ V A+ E T K RN+ACYDA ALN RG GVQ+RR +CF Sbjct: 52 RFREALQAAAVAVGARYCNHDTPPGPLPDISKLPERQAAAQQHAGLCGKYHAEHIANIDVTMVETRAAGA--EITTKRMRNKACYDAGTALNARGRGVQLRRQKCF 155
BLAST of mRNA_P-littoralis_Contig1005.14.1 vs. uniprot
Match: A0A6H5KV53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV53_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 4.120e-13 Identity = 44/113 (38.94%), Postives = 56/113 (49.56%), Query Frame = 1 Query: 112 VLEHHTARTREFAPAACRVVGSLYCECVGEPQPMKDFTQREERRVAARQHPGTCGVAMAGLIAAVETEDVRQTASRRQQEATFKSFRNQACYDAARALNVRGAGVQVRRNRCF 450 V E H R REF A G+ C + + R++ AA++HPG CGV +AG V +DV A RR TF NQ C+DAA+ L V G GVQ+ R CF Sbjct: 4 VRESHPGRVREFVFDAVVAAGAGSCLHDDPLKALPGGLTRDQGVEAAKEHPGLCGVYLAG----VSFDDVLAAAERRGVSVTFNVLLNQCCFDAAKKLRVGGMGVQLARKECF 112 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1005.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1005.14.1 >prot_P-littoralis_Contig1005.14.1 ID=prot_P-littoralis_Contig1005.14.1|Name=mRNA_P-littoralis_Contig1005.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=151bp KQQRHQRVWRTKTTHTMFTRRSSKPTVAPSMPSFSSCVLEHHTARTREFAback to top mRNA from alignment at P-littoralis_Contig1005:39438..41009- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1005.14.1 ID=mRNA_P-littoralis_Contig1005.14.1|Name=mRNA_P-littoralis_Contig1005.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1572bp|location=Sequence derived from alignment at P-littoralis_Contig1005:39438..41009- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1005:39438..41009- >mRNA_P-littoralis_Contig1005.14.1 ID=mRNA_P-littoralis_Contig1005.14.1|Name=mRNA_P-littoralis_Contig1005.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=453bp|location=Sequence derived from alignment at P-littoralis_Contig1005:39438..41009- (Pylaiella littoralis U1_48)back to top |