mRNA_P-littoralis_Contig1005.10.1 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1005.10.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE) HSP 1 Score: 234 bits (598), Expect = 1.050e-59 Identity = 155/457 (33.92%), Postives = 223/457 (48.80%), Query Frame = 2 Query: 341 TFFNFMFPMAVVALLVKETNDYFTFCTTTPTRNEDDKREDRHKAKEPTNGRASWPDGGITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHP--DGSYDEGWDALWHIRAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDNFF----FFACPLQLPSLARVVRCGYTEGHSPGSQPGRAVLDHHQADPEAEGGHGFREVRVFDLHAVEGLQA-----CP--------ASLHHPRQQGR--------------------LRPNPVQ*-IRPGKKEGDTVAAAVS-TRLQHLH--GGVDLADQLNGYYLTLHKAYNYFWRRVFEQKLMQACSNAWLLYK 1582 T F+ MFP + L V +TN Y CTT D R+ K T G + P+ +Y ++GI +T+GL + + HW S + D+ LVR+ M+RD+F L+Y RF H + +P R D + + +D+ WHIR E +LN W+ QW+ +DEQMV V A +++R+ PKKPI +G+KL+A+ GYCF S DGG GDPKLR W DCPLGRT R VL VL GAC +++ SG Y+AMDN+F F C L + V C + G+ P LD P G F R ++ V+ L + C A++ P+++ RP+P +R + G ++ R ++ GGVD ADQ NG + HK+Y WRRV E K Q +N ++++K Sbjct: 638 TCFDMMFPDEAIDLFVDKTNKYVNLCTTPSLPGAKDTRKAHQVEKTRTLGMVTLPEPAFERKHIYGMLGITITMGLTKKTRMRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPRWAGEDKTPNPEFDSKWHIRELEDILNNAWTENMDFNQWLCYDEQMVKTVSTFAHYLMRHSPKKPITHGMKLFAICDIEGYCFVSSVDGGMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKFGDKIDGSGAYIAMDNYFKSPTLFEC-LASHDIFAVGTC--RSNRTGGAVPYLQSLDRR---PVERGEMHF--ARAGNVAFVQWLDSKEIILCSSIHIAQPHAAIGEPKKEDSDGGDDHFAPLPYRCFVCPLPSRPHPFMFSLRKAGQAGKSLELQQPWMRKDYVANMGGVDTADQQNGSHTHDHKSYTNHWRRVMEGKFEQTFTNIFVMFK 1086
BLAST of mRNA_P-littoralis_Contig1005.10.1 vs. uniprot
Match: A0A6H5JJP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP9_9PHAE) HSP 1 Score: 207 bits (528), Expect = 3.960e-51 Identity = 179/600 (29.83%), Postives = 253/600 (42.17%), Query Frame = 2 Query: 170 DRGTGKTFADFLHKKETDGCPKSFRPSKSTLDSDEYPSFDP--SKLGRFKSAQLGQLAFTFFNFMFPMAVVALLVKETNDYFTFCTTTPTRNEDDKREDRHKAKEPTNGRASWPDGGITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKR--------------------HP----------------------DGSYDEGW-----------DALWHIRAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDNFF----FFACPLQ-----------------LPSLARVVRCGYTEGHSPGSQPGRAV----LDH---------HQADPEAEGGHGFREVRVF-DLHAVEGLQAC----PASLHHP-----RQQGRLRPNPVQ*IRPGKKEGDTVAAAVSTRLQHLHGGVDLADQLNGYYLTLHKAYNYFWRRVFEQKLMQACSNAWLLYKWWLADMLVQVNEEITKVEKGGYAEGTPERL 1672 DRG HKK T S S S ++ PS D L L L T F+ MFP V L V +TN Y CTT P D R+ K T G + P+ +Y ++GI +T+GL + HW S + D+ LVR+ M+RD+F L+YSRF H + +P R +P DG+ W D+ WHIR E +LN W+ +W+ +DEQM+ V A +++R PK+PI +G+KL+A+ GYCF S DGG GDPKLR W DCPLGRT R VL VL GAC +++ SG ++AM N F F C +P L + R G ++ G LD H A P A G +E D H C P S HP R+ G+ + ++ +P ++ D VA GGV+ AD+ NG + H++Y WR V E K Q +N ++++K +++ + Q N+ ++E GG E+L Sbjct: 475 DRGIPDFAGTDDHKKRTQRETVSAA-SLSASAREKLPSLDTFMDNLDESGKFPLHGLMMTCFDMMFPDEAVDLFVDKTNKYVNLCTTPPLPGAKDTRKAHQVKKTRTLGMVTLPEPAFERKHIYGMLGITITMGLTMKTRMRKHWSRSLHDDYPLVRKCMSRDLFELLYSRFIHCSDGNAPPRWTGXMKTRMRKHWSRSLHDDYPLVRKCMSRDLFELLYSRFIHCSDGNAPPRWTGEDKTPNPEFDSKWHIRELEDILNNAWTENMDFNEWLCYDEQMMRTVSTFAHYLMRDNPKEPITHGMKLFAICDIEGYCFVSSVDGGMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKFGDKIDGSGVHIAMSNNFTSPTLFECLASHDIFAVGTCRSNRTGGAVPYLQSLDRRPVERGEMHFARAGNVAFVQWLDSKEIILCSSIHIAQPHAAIGEPKKEDDDGGDDHFAPLPYRCFVCIPPSRPHPFMFSLRKAGQAGKS-LELQQPWMRK-DYVANM---------GGVNTADRQNGSHTHDHESYTNHWRGVMEGKFKQTFTNIFVMFKKYVSLLEGQANK---RIEGGGVELEVVEKL 1059
BLAST of mRNA_P-littoralis_Contig1005.10.1 vs. uniprot
Match: A0A6H5L3T1_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3T1_9PHAE) HSP 1 Score: 201 bits (510), Expect = 1.070e-50 Identity = 101/197 (51.27%), Postives = 136/197 (69.04%), Query Frame = 2 Query: 173 RGTGKTFADFLHKKETDGCPKSFRPSKSTLDSDEYPSFDPSKLGRFKSAQLGQLAFTFFNFMFPMAVVALLVKETNDYFTFCTTTPTRNEDDKREDRHKAKEPTNGRASWPDGGITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIR 763 RG G + D K+E +G SF+PSK TLD+ P+FDP KLGRF +LG+LAFTFF+ MFP AV+ LLV++TN+YF FC +T +E RH+ ++ G++SWP GIT +MM VI I+LT+GLV+LP + +HW +HD+KLVR + RDMFLLIY RFFHMA + +P+R G+ + GWD+L HIR Sbjct: 441 RGDGHQYYDCHRKREGEGEDVSFKPSKKTLDA--LPAFDPDKLGRFSVDELGELAFTFFSIMFPAAVILLLVRKTNEYFNFCRSTKNPKG---QEQRHRDQKARKGKSSWPKKGITKSMMQGVISIILTIGLVQLPAMHDHWSCHSFHDYKLVRACLPRDMFLLIYGRFFHMASSGAPERLQGGTTEPGWDSLHHIR 632
BLAST of mRNA_P-littoralis_Contig1005.10.1 vs. uniprot
Match: A0A6H5KQZ5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ5_9PHAE) HSP 1 Score: 194 bits (493), Expect = 1.180e-49 Identity = 119/346 (34.39%), Postives = 169/346 (48.84%), Query Frame = 2 Query: 644 TRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIRAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDNFFFFACPLQLPSLARVVRCGYTEGHSPG--------SQPGRAVLDHHQADPEAEGGHGFREVRVFDLHAVEGLQACPASLHHPRQQGRLRPNPVQ*I-RPGKKEGDTVAAAVS-TRLQHLH--GGVDLADQLNGYYLTLHKAYNYFWRRVFEQKLMQACSNAWLLYKWWLADMLVQVNEEITKVEKGG 1645 T ++F+L Y RFF++APA D YD HIR E + N+ WS G W+S+DEQMV R ++RY KPIKNG+K WA+ C SGYCF DGGF GD KLR +A CPLGR+ R V++VL AC + +++ G VAMDNFF A L+ + + G G+ G ++ G A + Q R +L V+ + + L + P+ R G+ V++ R +++ GGVD+ADQ G + H+ +FWRRVF+QK QA SN WLL+ W ++ Q + + G Sbjct: 6 TTNLFVLFYGRFFNLAPATGKLNKDDPQYD----CKHHIRKLEDVFNKCWSELVEPGAWLSYDEQMVKSTARVMFALMRYNKAKPIKNGIKCWAICCPSGYCFVQSIDGGFSGDIKLRPYASCPLGRSARTVMYVLLEACETFSNKIIGKGITVAMDNFFTGAPLLRCLATRDIFAVGTLRGNRIGVELANYLWAKEGMAATERGQ----------MLTARSDELVIVKWIDSQEVYLMSTKHVFADEWEPLAYEKRAANNNGEKVSSRQPLARKEYVKNMGGVDVADQRLGSHAHKHRPMTFFWRRVFDQKFAQAVSNGWLLFYEWAGVLVTQCTAALEAATQDG 337
BLAST of mRNA_P-littoralis_Contig1005.10.1 vs. uniprot
Match: A0A6H5JFU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU5_9PHAE) HSP 1 Score: 197 bits (502), Expect = 1.340e-48 Identity = 100/197 (50.76%), Postives = 133/197 (67.51%), Query Frame = 2 Query: 173 RGTGKTFADFLHKKETDGCPKSFRPSKSTLDSDEYPSFDPSKLGRFKSAQLGQLAFTFFNFMFPMAVVALLVKETNDYFTFCTTTPTRNEDDKREDRHKAKEPTNGRASWPDGGITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIR 763 RG G + D K+E +G SF+PSK T+ + P+FDP KLGRF +LG+LAFTFF+ MFP AV+ LLV++T +YF FC +T E +E RH+ K+ G++SWP GIT MM VIGI+L +GLV+LP + +HW +HD+KLVR + RDM LLIY RFFHMA + +PKR DG+ + GW +L HIR Sbjct: 647 RGDGHQYYDCHRKREGEGEDVSFKPSKKTIGA--LPAFDPDKLGRFSVDELGELAFTFFSIMFPAAVILLLVRKTYEYFNFCRSTKNPKE---QEQRHRDKKARKGKSSWPKKGITKRMMQGVIGIILAIGLVQLPAVHDHWSCHSFHDYKLVRACLPRDMSLLIYGRFFHMASSGAPKRLQDGTTEPGWGSLHHIR 838
BLAST of mRNA_P-littoralis_Contig1005.10.1 vs. uniprot
Match: A0A6H5KMJ3_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMJ3_9PHAE) HSP 1 Score: 177 bits (449), Expect = 4.270e-46 Identity = 84/196 (42.86%), Postives = 120/196 (61.22%), Query Frame = 2 Query: 539 VIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRH-PDGSYDEGWDALWHIRAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDNFF 1123 +IGI +T+GL + + HW S + ++ LV++ M RD+F L+Y RF H + +P+R PDG + +D+ WHIR E +LN W+ W+S+DEQM+ V + + + Y P KPIK+G+KL A + Y S DGG GDPKLR + DCPLGRT R VL VL G C L +++ SG ++AMDN+F Sbjct: 33 MIGIFITMGLTKKVRMRKHWSRSAHDNYPLVQKCMPRDVFELLYCRFLHCSDPNAPERLLPDGEENPDYDSKWHIRELEEILNTAWAANVECDNWLSYDEQMIKTVSKYSSKVSFYCPAKPIKHGMKLLAACDITSYSLTSSVDGGMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLRQKIDGSGLFIAMDNYF 228
BLAST of mRNA_P-littoralis_Contig1005.10.1 vs. uniprot
Match: A0A6H5KPD8_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD8_9PHAE) HSP 1 Score: 173 bits (439), Expect = 2.200e-44 Identity = 85/204 (41.67%), Postives = 112/204 (54.90%), Query Frame = 2 Query: 512 GITANMMYTVIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIRAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDNFF 1123 G +Y+V G +H V + ++ +VR M RD+F+L Y RFFH+APA D YD HIR E +LN+ WS G W+S+DEQMV R ++RY KPIK+G+K WA+ C SGY F DGGF GD KLR +A CPLGR+ R V++VL AC + +++ G VAMDNFF Sbjct: 28 GFERKHLYSVTGXXXXXXXXXXXXXXDHCGVEAHDNYPMVRACMPRDLFVLFYGRFFHLAPATGKLNKDDPKYD----CKHHIRKLEDVLNKCWSELVEPGAWLSYDEQMVKSTARVMLALMRYNKAKPIKHGIKCWAICCPSGYSFVQSIDGGFSGDIKLRPYASCPLGRSARTVMYVLLEACETFSNKIIGKGITVAMDNFF 227
BLAST of mRNA_P-littoralis_Contig1005.10.1 vs. uniprot
Match: A0A6H5KCC7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCC7_9PHAE) HSP 1 Score: 162 bits (409), Expect = 6.310e-39 Identity = 80/196 (40.82%), Postives = 115/196 (58.67%), Query Frame = 2 Query: 539 VIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRH-PDGSYDEGWDALWHIRAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDNFF 1123 +IGI +T+GL + + HW S + ++ LV++ M+RD+F L+Y RF H + +P+R PDG + +D+ HIR E +LN W+ G W+S+DEQM+ V + + G+KL A +GYC S DGG GDPKLR + DCPLGRT R VL VL G C L +++ SG ++AMDN+F Sbjct: 33 MIGIFITMGLTKKVRMRKHWSRSAHDNYPLVQKCMSRDVFELLYCRFLHCSDPNAPERLLPDGEENPDYDSKRHIRELEEILNTAWATNVECGNWLSYDEQMIKTVSK-------------YEQGMKLLAACDITGYCLTSSVDGGMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLRQKIDGSGVFIAMDNYF 215
BLAST of mRNA_P-littoralis_Contig1005.10.1 vs. uniprot
Match: A0A6H5KG44_9PHAE (DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG44_9PHAE) HSP 1 Score: 137 bits (345), Expect = 1.730e-32 Identity = 67/147 (45.58%), Postives = 87/147 (59.18%), Query Frame = 2 Query: 761 RAFETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDNFFFFACPLQLPSLARVVRCGYTEGHSPG 1201 R E +LNE WS G W+S+DEQMV R ++R+ KPIK G+K WA+ C SGYCF DGGF GD KLR A CPLGR+ R VL+VL ACP +++++ SG VAMDNFF A ++ + + G G+ G Sbjct: 3 RELEDLLNECWSKLVEPGAWLSYDEQMVKSTARAMFALMRFNKTKPIKTGIKGWAICCPSGYCFVQSIDGGFSGDIKLRPHATCPLGRSARTVLYVLLEACPTFSDKIVGSGITVAMDNFFTGASLVRCLATRDIFAVGTLRGNRTG 149
BLAST of mRNA_P-littoralis_Contig1005.10.1 vs. uniprot
Match: A0A6H5KJJ0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJJ0_9PHAE) HSP 1 Score: 138 bits (348), Expect = 1.460e-30 Identity = 74/198 (37.37%), Postives = 110/198 (55.56%), Query Frame = 2 Query: 539 VIGIVLTLGLVRLPEIANHWDVSDYHDFKLVRQSMTRDMFLLIYSRFFHMAPAPSPKRHPDGSYDEGWDALWHIRA---FETMLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDNFF 1123 +IGI +T+GL + + +W S + ++ LV++ M+ + L + R + R + S L+H+RA E +LN W+ W+S+DEQM+ V + + + Y P KPIK+G+KL A +GYC S DGG GDPKLR + DCPLGR R VL VL G C L +++ SG ++AMDN+F Sbjct: 33 MIGIFITIGLTKKVRMQKNWSRSAHDNYPLVQKCMSVLLQLGWWGRDRRGSKGTGAPRKVEDS-PPSTAPLFHVRAVWELEEILNTAWAANVECDNWLSYDEQMIKTVSKYSSKVSFYCPAKPIKHGMKLLAACDITGYCLTSSVDGGMKGDPKLRPYMDCPLGRATRHVLHVLLGECGVLRQKIDGSGVFIAMDNYF 229 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1005.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1005.10.1 >prot_P-littoralis_Contig1005.10.1 ID=prot_P-littoralis_Contig1005.10.1|Name=mRNA_P-littoralis_Contig1005.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=342bp MFPMAVVALLVKETNDYFTFCTTTPTRNEDDKREDRHKAKEPTNGRASWPback to top mRNA from alignment at P-littoralis_Contig1005:33234..38409+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1005.10.1 ID=mRNA_P-littoralis_Contig1005.10.1|Name=mRNA_P-littoralis_Contig1005.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5176bp|location=Sequence derived from alignment at P-littoralis_Contig1005:33234..38409+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1005:33234..38409+ >mRNA_P-littoralis_Contig1005.10.1 ID=mRNA_P-littoralis_Contig1005.10.1|Name=mRNA_P-littoralis_Contig1005.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1026bp|location=Sequence derived from alignment at P-littoralis_Contig1005:33234..38409+ (Pylaiella littoralis U1_48)back to top |