mRNA_P-littoralis_Contig1004.3.1 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1004.3.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE) HSP 1 Score: 352 bits (903), Expect = 1.960e-117 Identity = 169/230 (73.48%), Postives = 194/230 (84.35%), Query Frame = 1 Query: 1 MSFISVPTAQATFHSFCRHFAREMYDEHIYLPTGDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRLDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVDNGYHK-VGCCRERRFDFYAIEKGDTVFSTRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCMLHNML 687 MSFIS+ TA ATFH F R+FAREMY EHI+LPTGDYQ KVM++Y+RLGF+GA GSTDVTH+ WG CPYNQARS+TGKEGYPT+AYQVTVDHTKR LAVTPGFTG+TNDK+IIR D AVT+IR DPIY+E+ + +Y+ADG Q KGCYLLVDNGYHK V + Y I++ D FS RLES RKDVEC+FGIVKGRFRI KL+IPYHK+EDIDNVFFTCC+LHNML Sbjct: 178 MSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSK---YPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNML 404
BLAST of mRNA_P-littoralis_Contig1004.3.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE) HSP 1 Score: 333 bits (854), Expect = 4.730e-111 Identity = 159/229 (69.43%), Postives = 186/229 (81.22%), Query Frame = 1 Query: 1 MSFISVPTAQATFHSFCRHFAREMYDEHIYLPTGDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRLDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVDNGYHKVGCCRERRFDFYAIEKGDTVFSTRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCMLHNML 687 MSFIS T +TFH FC++FA E+YDE++YLPTG+ KVM +Y+R+GF GA+GSTDVTH+ WG CPYNQAR +TGKEG PT+A+QVTVDH+ R LAVT GFTGATNDKTIIR DKAVTRIRTDP+YTE+ Y LY DG +EKGCYLLVDNGYHK I++GD +FS RLES+RKDVECYFGI+KGRFRINKLAI +HK+E IDNVFFTCC+LHNML Sbjct: 103 MSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPP--SKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNML 329
BLAST of mRNA_P-littoralis_Contig1004.3.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE) HSP 1 Score: 333 bits (854), Expect = 7.860e-110 Identity = 159/229 (69.43%), Postives = 186/229 (81.22%), Query Frame = 1 Query: 1 MSFISVPTAQATFHSFCRHFAREMYDEHIYLPTGDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRLDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVDNGYHKVGCCRERRFDFYAIEKGDTVFSTRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCMLHNML 687 MSFIS T +TFH FC++FA E+YDE++YLPTG+ KVM +Y+R+GF GA+GSTDVTH+ WG CPYNQAR +TGKEG PT+A+QVTVDH+ R LAVT GFTGATNDKTIIR DKAVTRIRTDP+YTE+ Y LY DG +EKGCYLLVDNGYHK I++GD +FS RLES+RKDVECYFGI+KGRFRINKLAI +HK+E IDNVFFTCC+LHNML Sbjct: 194 MSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPP--SKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNML 420
BLAST of mRNA_P-littoralis_Contig1004.3.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE) HSP 1 Score: 290 bits (742), Expect = 2.580e-94 Identity = 141/232 (60.78%), Postives = 174/232 (75.00%), Query Frame = 1 Query: 1 MSFISVPTAQATFHSFCRHFAREMYDEHIYLPT---GDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRLDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVDNGYHKVGCCRERRFDFYAIEKGDTVFSTRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCMLHNML 687 +S++S T Q FH FC+HFAREMYDEHIYLP+ G+ VM +Y+RLGF+GA+GS DVTH+ W CPYN ARS+TGKEG PT+ YQVTV+H RA+AVT GFT +TNDKT + D V +IRTD YTE+T+++Y+ DG T KGCYLLVDNGYHK E Y + + D +FS RLES RKDVEC+FGI+KG FRI K+A+ YH++E IDNVFFTCC+LHNML Sbjct: 118 VSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELD-HVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTK--YPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNML 346
BLAST of mRNA_P-littoralis_Contig1004.3.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE) HSP 1 Score: 287 bits (735), Expect = 2.050e-92 Identity = 140/231 (60.61%), Postives = 170/231 (73.59%), Query Frame = 1 Query: 1 MSFISVPTAQATFHSFCRHFAREMYDEHIYLPTGDYQT--KVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRLDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVDNGYHKVGCCRERRFDFYAIEKGDTVFSTRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCMLHNML 687 +S++S PT Q FH FC HFA EMYDEHI+LP+ + +VM +YE+LGF GA+GSTDVTH+ W CPYNQ RS+TGKEG PT+ YQVTV+H R LAVT GFTG+TNDKTII D+AV RIRTD Y E+ + ++ DG T KGCYL+VDNGYHK E Y + + D +FS RLES RKDVEC+FGI+K RFRI KLA+ Y K+E +D VFFTCC+LHNML Sbjct: 147 LSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEP--SKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNML 375
BLAST of mRNA_P-littoralis_Contig1004.3.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE) HSP 1 Score: 285 bits (729), Expect = 1.000e-91 Identity = 149/259 (57.53%), Postives = 176/259 (67.95%), Query Frame = 1 Query: 1 MSFISVPTAQATFHSFCRHFAREMYDEHIYLPTGDYQT--KVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRLDKAVTRIRTDPIYT----------------------------ERTYNLYDADGATRQEKGCYLLVDNGYHKVGCCRERRFDFYAIEKGDTVFSTRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCMLHNML 687 MS++S T Q FH FCRHFAREMYDE I+LPT + VM +Y+RLGFTGA+GS DVTH+AW CPYNQARS+TGKEG+PTIAYQVTVDH RA+AVT GFTG+TNDKTI+ D AV +I TD YT E+T+++Y+ DG T KGCYLLVDNGYHK E Y + + D +FS RLES RKDVEC+FGI+KGRFRI KLA+ Y +E IDNVFFTC +LHNML Sbjct: 105 MSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEP--SKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHNML 361
BLAST of mRNA_P-littoralis_Contig1004.3.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE) HSP 1 Score: 278 bits (712), Expect = 4.660e-90 Identity = 137/229 (59.83%), Postives = 161/229 (70.31%), Query Frame = 1 Query: 1 MSFISVPTAQATFHSFCRHFAREMYDEHIYLPTGDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRLDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVDNGYHKVGCCRERRFDFYAIEKGDTVFSTRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCMLHNML 687 +S +S AQA FH FCRH A EM+DEHIYLPTG Y +VM + +LG TGA GSTDVTH+ CP+ RSFTGKEG+PTIAY+VTVDH RALAVT GF G TNDKT IR D V +IRT+ YTER Y L +G R +GC+L+VDNGY++ DT FS LES RKDVEC+FGI+KGRFRI KL +PYHK+E IDN+FFTCC+LHNML Sbjct: 152 LSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVTNGFAGGTNDKTTIRYDSGVNKIRTESQYTEREYKLRKVNGTERTRRGCFLIVDNGYYE--------------SNEDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNML 366
BLAST of mRNA_P-littoralis_Contig1004.3.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE) HSP 1 Score: 269 bits (688), Expect = 1.920e-86 Identity = 137/230 (59.57%), Postives = 159/230 (69.13%), Query Frame = 1 Query: 1 MSFISVPTAQATFHSFCRHFAREMYDEHIYLPTGDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRLDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVDNGYHK-VGCCRERRFDFYAIEKGDTVFSTRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCMLHNML 687 +S +S AQ TFH FCRHFA EM+DEHIYLPTG Y +VM + +LG+TGA GSTDVTH+ W CP+ RSFTGKEG+PTIAY VTVDH R LAVT GFTGATNDKTIIR D V +IRT YTER Y L A+G R +GC+L+VDNGYH+ V + Y DT FS LES RKDV C FRI KL +PYHK+E +DN+FFTCC+LHNML Sbjct: 56 LSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSK---YPQRNEDTAFSRDLESVRKDVGC--------FRILKLRMPYHKREYVDNIFFTCCILHNML 274
BLAST of mRNA_P-littoralis_Contig1004.3.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI) HSP 1 Score: 266 bits (679), Expect = 3.950e-86 Identity = 130/208 (62.50%), Postives = 158/208 (75.96%), Query Frame = 1 Query: 70 MYDEHIYLPTGDYQTK--VMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRLDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVDNGYHKVGCCRERRFDFYAIEKGDTVFSTRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCMLHNML 687 MYDEHI+LPT + V+ +Y+RLGFTGA+GS DVTH+AW CPYNQARS+TGKEG+PTI YQVTVDH RA+AVT GFTG+TNDKT + D AV +IRTD YTE+T+++Y+ DG T KGCY+LVDNGYHK E Y + + D +FS RLES RKDVEC+FGI+KGR RI LA+ + +E IDNVFFTCC+LHNML Sbjct: 1 MYDEHIHLPTEESGKLDLVIEQYDRLGFTGAMGSMDVTHIAWSRCPYNQARSYTGKEGFPTIGYQVTVDHAGRAIAVTEGFTGSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVDNGYHKWQILIEP--SKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRILMLAMAFQSQERIDNVFFTCCILHNML 206
BLAST of mRNA_P-littoralis_Contig1004.3.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE) HSP 1 Score: 259 bits (663), Expect = 3.380e-83 Identity = 135/231 (58.44%), Postives = 160/231 (69.26%), Query Frame = 1 Query: 1 MSFISVPTAQATFHSFCRHFAREMYDEHIYLPTGDYQT--KVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALAVTPGFTGATNDKTIIRLDKAVTRIRTDPIYTERTYNLYDADGATRQEKGCYLLVDNGYHKVGCCRERRFDFYAIEKGDTVFSTRLESSRKDVECYFGIVKGRFRINKLAIPYHKKEDIDNVFFTCCMLHNML 687 MS++S T Q FH FCR FAREMYDEHI+LP + VM +Y+RLG CPYNQARS+TGK+ +PTIAYQVTVDH RA+AVT GFTG+TNDKTI+ D AV +IRTD YTE+T++LY+ DG T KGCY L DNGYHK E Y + + D +FS RLES RKDVEC+FGI+KGRFRI KLA+ Y +E IDNVFFTCC+LHNML Sbjct: 40 MSWMSAKTVQGVFHKFCRLFAREMYDEHIHLPAEESGKLHHVMKQYDRLG-----------------CPYNQARSYTGKDWFPTIAYQVTVDHASRAIAVTEGFTGSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILIEP--SKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNML 251 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1004.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1004.3.1 >prot_P-littoralis_Contig1004.3.1 ID=prot_P-littoralis_Contig1004.3.1|Name=mRNA_P-littoralis_Contig1004.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=229bp MSFISVPTAQATFHSFCRHFAREMYDEHIYLPTGDYQTKVMSEYERLGFTback to top mRNA from alignment at P-littoralis_Contig1004:11960..13248- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1004.3.1 ID=mRNA_P-littoralis_Contig1004.3.1|Name=mRNA_P-littoralis_Contig1004.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1289bp|location=Sequence derived from alignment at P-littoralis_Contig1004:11960..13248- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1004:11960..13248- >mRNA_P-littoralis_Contig1004.3.1 ID=mRNA_P-littoralis_Contig1004.3.1|Name=mRNA_P-littoralis_Contig1004.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=687bp|location=Sequence derived from alignment at P-littoralis_Contig1004:11960..13248- (Pylaiella littoralis U1_48)back to top |