Homology
BLAST of mRNA_P-littoralis_Contig1003.9.2 vs. uniprot
Match: A0A6H5JSM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSM1_9PHAE) HSP 1 Score: 206 bits (525), Expect = 1.080e-62 Identity = 102/148 (68.92%), Postives = 117/148 (79.05%), Query Frame = 3 Query: 18 MAAVTPRDARIIAASLSCLLLLFGFQT-VGEMTNMALWGLAGVSMWSWAFTVSGRLKTRGHVEDNVRVVRHQSFVVSALCFGTALVGTIEAMIACYVQPWWLQVPANIGFTLLAFAVGCSVFGFSHDWVSQDPRLEKPLFLLDICVVS 458
M AVT RDA I+A S LLLL F VG MT+MA+W AGV+ WSW FTVSGRL+TR VEDNVRVVRHQSFV+ LC GTA+VGT+EAM+A YV+PWWLQ+ AN GFT LAF VGC +FG SH+WV +DP LEKPLFLLD+CVVS
Sbjct: 1 MVAVTGRDASIVAL-FSYLLLLCAFPAYVGRMTSMAVWSAAGVAGWSWGFTVSGRLRTRDPVEDNVRVVRHQSFVIWTLCCGTAVVGTMEAMVASYVRPWWLQIMANAGFTFLAFVVGCGIFGHSHEWVLRDPNLEKPLFLLDVCVVS 147
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Stop | 1 |
Start | 1 |
Model size | 1139 |
Hectar predicted targeting category | signal peptide |
Exons | 3 |
Cds size | 444 |
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1680789344.8090487-UTR-P-littoralis_Contig1003:21222..21900 | 1680789344.8090487-UTR-P-littoralis_Contig1003:21222..21900 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig1003 21223..21900 - |
1680789344.8500247-UTR-P-littoralis_Contig1003:27258..27275 | 1680789344.8500247-UTR-P-littoralis_Contig1003:27258..27275 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig1003 27259..27275 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1680789344.8173718-CDS-P-littoralis_Contig1003:21900..22152 | 1680789344.8173718-CDS-P-littoralis_Contig1003:21900..22152 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig1003 21901..22152 - |
1680789344.82524-CDS-P-littoralis_Contig1003:26039..26110 | 1680789344.82524-CDS-P-littoralis_Contig1003:26039..26110 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig1003 26040..26110 - |
1680789344.8340812-CDS-P-littoralis_Contig1003:27137..27258 | 1680789344.8340812-CDS-P-littoralis_Contig1003:27137..27258 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig1003 27138..27258 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1003.9.2 >prot_P-littoralis_Contig1003.9.2 ID=prot_P-littoralis_Contig1003.9.2|Name=mRNA_P-littoralis_Contig1003.9.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=148bp
MAAVTPRDARIIAASLSCLLLLFGFQTVGEMTNMALWGLAGVSMWSWAFT VSGRLKTRGHVEDNVRVVRHQSFVVSALCFGTALVGTIEAMIACYVQPWW LQVPANIGFTLLAFAVGCSVFGFSHDWVSQDPRLEKPLFLLDICVVS* back to topmRNA from alignment at P-littoralis_Contig1003:21223..27275- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig1003.9.2 ID=mRNA_P-littoralis_Contig1003.9.2|Name=mRNA_P-littoralis_Contig1003.9.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=6053bp|location=Sequence derived from alignment at P-littoralis_Contig1003:21223..27275- (Pylaiella littoralis U1_48) TGCACGACACCCGCGCCATGGCAGCGGTAACTCCGAGAGACGCTCGTATC
ATTGCGGCTAGCCTTTCGTGTTTGCTCTTACTTTTTGGGTTCCAGACGGT
GGGCGAAATGACGAATATGGCGCTCTGGGGTCTTGCCGGTGAGACAGAAA
ACACGCACAGGACGGCATTTCGATTTATTCTTACTTCGAAGTTCAAATTT
CACACTGATTTTGAAAAACGGCATGAGCTACTGCTGTATCCGACTTTCAC
ATATCATTGGGTCAGGATACTTCACATTTGTAAAAGGCGTTGGGCAAGAA
AATGCCGTTGGTTATCGCGCACAGCGGCGGCCAGGCTTCTCTTTGTACTG
TATACGCATAAACTCAGTCTAACATACCTCCAATCTTCTCTTCAAATTTA
AGACCTTTTTTTCACGACCCTTTCATCAATTTTGAACGAGTGTATTCAGA
TCAAGATCAAATAACGTTTGTTGTGTTAAAGGAGTCACGATCTGAGGCGA
GTTCGGTGGAGGACAATCTGCATCAGCGACGTGTGAATTGGCACGTCCAT
CAGATCTACTGCTGGGGCTGAGATATCGAAGGCCCCAGCAGTGGCTCAAA
AAGTCCGCAAATTGGACCGACACCAAACATCTTCCACTGCTCTGTTCGCC
GCAATGGACCCCAACCTCCTTGACTGCGGGTCTACAGCAGTAGCTCATGC
CGCTAGCTACCTCGGGTCGTCCGCAGTTCAGAAGATTGGGCCTATGGCGG
CGAGTGTAGCCGCATAACATGCCGGGATTCAGTCCAGATTGAGGAGTTGT
TGAGCTACTGCTGGGGCCCTCGATATCTCCTCCCCAGCAGCGGATCTGAG
CACATCCAACACACACGTTGCCTGTCCATGGCTTCCTTTACTGAATTCGC
CTCTCAGGTCGGGATTTTACTACGGCGGGAAGTTGGTTTTCGGCTTTCAG
GCCCCTATTACCTTGGGTTGAGTACGAAAAGTTTCACCGCCCTTGTCAGG
CCACCCTTACGTGTAAGCTTTTCACACGTACCTGGTACACACCTACGTAA
CCAGTGTGATACCGGCAATCTGCACACATGCGTATGACAACAGGGCAATC
AAAGCGGTATGCTACCCCCTCACAATTTTCCCCCTCGTATGGTATCCCAA
TCCTCTTTTCAATAGGCGTTTCGATGTGGAGCTGGGCCTTCACAGTTTCG
GGTCGCCTCAAAACACGAGGCCATGTGGAGGATAATGTACGTGTATCAAC
GCGCAATCGTTGTGTCGAGATCGGTATTTTATGTTTTTAGACCACTCTTA
CGGTTAGAAAACCTGAGTACATCAGAGAAGGCTATTTCTGGTCTTGGACG
TTTGGAGGCCACCTGCCGGTAAGAAAAAACACGTTTTCCGATTCGAACTT
TTGAATTACGTTTTGCTGATTGTTGTGGGTCGATCAGAAAAGTTTACTGG
ACAGCAGTTTGAACACCCCCAAGTCAGTCAGCCGTTCACGGTGAGGTGAC
ATGCAAACTTTTTTTCCAGCCTATCGACGCCTCGCGACCTCAAAGAACCA
CGACACGACTGAGGATCATGCACACAGGTCACGGGCGATGGCATTGGTTT
TGCTGCGGCTTCACTAGTTTGAGAGCGATAAACGAAAATCAAAACTGGTG
GGATCGCGAGAGAGAGCTGGCAGCTGCTCTGAACTCCTGAACCCAGCAGC
AGCAGCAGCAGCAGTAGGAGCAGCCACACGTTCTTACGCCGCCACCAGTT
TCTTTTTTGGGCAAACGCCAAAAAGCGGTATACCGCCATGGTTCCGCGCC
ACAAAGCGGTACACCAAATTACACCTTGGCATTTGAGCCCTGTTCGCGTC
GCTGATTGGCCAACTCAGCCTCGTATCGCTTTCTGGCACTAGCAACCGGC
GGTATATCACTTTTGGGCTTCTCGGGTCGGCCTTCGCCGCTTTTTGGCGT
AACCCACAACGCTTTCTGGCGTGATATTCCGCAGACCATTCGCCGAACAG
CCCTCCCCACTTTCATATCACACGTCACACCATCGACCAACAAAAGGAAT
GGATCAACCAAGAAAGCCACGTCACGTCGTGAGCTCCACGTCGTACCCCC
ACACCCCACACCGATCCCTGCAGGATGGTAGGTGCCGATGTGCGTGACAG
AAGACCAAATAATCGATCACCAATTATACGAGTACAAGGAAGGGGAATGC
AACGCTCCAAAATGAAGTGTCGAATTTGTCTACACTGAAATCGATGCCAT
CCAGGCCTACCAACCAATGCGCGAAGGATGTACAAGTTGTAGGCAATTGC
ATGTAGGTAGGGTGGAAGGATGTAAACCCCGAAGAGTCTGTCCAATCAGC
GGTGCGTCATTAATGTGTGCAGGTGTTTGCCCTCATGTGCTTAAGACGCC
GCCAGGGCGGTGTGGCGATCGCGTGCGCCATAACTGGCACGTGTTATTGA
TGTGTGCGCGTGTACGCGTGCCCTCTGTGCGATCATGAGGGTGCCTGGGG
TCACGGCTTGACAGCAGTGCCTCGATATTGGTGATCGATTTGGTATTCTG
TAACGCACATCGGTACCAACCATCCTGAAGGGATCGGTGTGGGGTGTGGG
GGTACGCGTGGAGCCGTGTGGCTTTCTTGGTTGATCCATTCCCCTTGGTT
GATCGATGGTATGACTTGTGATATGAAAGTGGGGAGGGCTGTTCGGCGAA
TGGTCTGCGGAATATCACGCCAGAAAGCGTTGTGGGTTACGCCAAAAAGC
GGTGAAGGCCGACCTGAGGGGCCCAAAAGATATACCGCCGGTTGCTAGTG
CCAGAAAGCGATACGAGGCTGAGTTGGCCAATCAGCGACGCGAACAGGGC
TCAAATGCCAAGGTGTAATTTGGTGTACCGCTTTGTGGCGCGGAACCATG
GCGGTATACCGCTTTTTGGCGTTTGCCCTTCTTTTTTTGTCCATCGCTCT
CGAACAAATAAAGCCATGGCTCGTGAGCTATGTATGTATATAGTCCTTAT
CCTGTGGTGGTCACCTGAGGCCGCGAGGCATCAATGGGCTGGCTCAAAAA
GTTTGCAGGCATCGATGACGAGTGAAAAAAGAACTCACCTCTCGGCTGGG
GCTGTGCCGGGTTTTCGTTTCTTTTTTCCGCACGTCATCGATGCCTGCAA
TAATTTTTCGCAAGCCCATTGATGCTACGGACCCAGATGACCACCGCAGG
AGGAGAGCCGTGTGCACAGCTCACGGGGAATGGCTTCGGCGGCATGTCTG
TGGCATTCGTTCGAGATTGACGAACGAAATAGCAAACTGGTTGCAGGGCG
AATCAAATGTCACACACACCAAGAAGCCGCATGAGAGAGTTTTTTTCAGA
GAGTTTGTTTTTCGATCACATTTGTTGTTTCGTTTCTATTCCAAAAGATG
CGGTGCTGTGAACAACCCTGTCGGAATTGTACGTATTGGAACGGGGCTTT
TCTGATAAGCGTCGAACCGCAAGAAATTACCTCGTTTTCGTTACTTCTCA
CCCTGCCTTTGTTACTCCTCTCGTGGTGAATGGGGTAGTTTGAGCCATAT
GGAAGATGTGGTAAAAACAGGAACACCTTGTCTCAGGGCACCGGTAGTCT
TTGTAAAAATGCAAAACATTCGCGCTTTGCTAGCCCCAGCGGAATTTTAC
GGTAGTGTATCCTTGAGGTTTTAGAGGTTTTAGGGGTTAATCCTTTAGGG
GTTACTCCTTTGGACCATGTAGTCTCAGCGCTGCCTGCATGGTCATGAAG
ATAAGCACCTTCACCAAAAACGCTTCCTCACAACTACGAGCGTGGGGCGC
GGAGTACGCGCGGAGGGTTGGACGTTTTTCGGGATCAAGATGGCGGAACG
AGACGCAAACCGGTGTAAGAACCGGCGGCTGCAGATGGCCTGCACGGCAC
GCAAACCCAAACACACGATAGCTTAACATAGTATACGGTGACAACTTGCT
TCGTTTGACATACACCCCCGGAAGGAATTGTTCATGGACATGGAGCCAAG
GTGGAGCTGCCACTACAGTAAAGTGTTTTGGTTCGAGGGAGTGTTCATGT
AGCATTGAAGAACTTTAGTAGTACTCACTGATGGAGACCAGTGTACCCAC
GTGATGGCGGTGAACTAGCAGGAGGATAAATTTCGAGTAAGTTATAGCAG
GAGGATAACTTTCGAATATTCTATGGCACATGCGACTGCTTGGTGGCTTC
TGATTGTGTGTGTGATGTGTCCGCTGCTCAATATCTTCCTGCCAAGCTGT
CAAAAACGATACCATCCCTCCAGGTCTGACCGACTACCTCAGCCGTGTGT
ATGCCGACGATATGCGGTGCTGTGTTTTAAGCAACAGGTACATACGCTCC
ACTGATTTTCTTCCCAAACTTCAACCTGTATGCGCGCTTGCAAGGCTGGT
TTGCAAGGTTCACTCGCGCCCCCCCGAAACTTTTATTCTATGTGTACTGG
GGGTACTCTCGAATGGGGAGTACCCCCTCGGAGCGTAGACTACCACGCAG
AGTTTCGCCATACTTCCGTGAAATCCAACAGACGAAACGAACCGGCCGGT
CTAGTGTCGCTGCTGCCATGGGCTCCGTTCGCTAAAACTATATGTCGTCG
GAGTCCTTTCCCACAGATTCGACGCACGACCCCCCCGGATGGCCAGACTT
GTTGGATATTCACGGACGACGAGTTCACAGGGACCGTTTCTCTCTTGCTA
ACATGTGTGCAATACGTAACACAACAATAAAGTGTACCTGGTCCTAGATT
TCGGGGCAAACTGCGCATTGGGAAAAAAGTCAGGTGACTAGTAGACCGTG
GAAACAATCCCCCCGCCCCCCCCCCTCCCCCCCCCTTTTCACACTTTTAT
TTCATTTTTGGCGTGTTGGAGAAATAAAATCAAGTGACCAGGTCGTGAGA
GGAATTTACTCCCCCCCTTTTTCACACTTTTCATTTACTTCAGTCTTACG
CTCTATTCTCAAGAAGCACCAGCGCACTGTTGTATCAGGAGGTACTCAAC
GATTCTGCAGACATTTGGATAATATCGAGGCTTTCCAACCACGGACGGAG
AAGGTACCGCGGGAGACGTCTTGCCTGCTGCATTTCACACAGTCGCTCTT
TGTTAACGTCACACATTTCGCAGGTCCGTGTGGTACGCCACCAGAGCTTC
GTGGTCTCAGCGCTTTGCTTCGGGACGGCACTTGTTGGCACGATCGAGGC
AATGATCGCATGTTACGTACAACCATGGTGGCTGCAGGTTCCCGCAAACA
TCGGGTTCACCCTCCTCGCGTTCGCCGTTGGTTGTAGCGTTTTCGGCTTT
TCACATGACTGGGTTTCTCAAGATCCTAGGTTAGAAAAACCTCTTTTTCT
GCTCGACATCTGCGTCGTGAGCTAAAAAGCAGGAGTTGGGGGTTCACCGT
CAACATTGTGGTCGGGTACATCAGTTCGTATGAAGTTGTCAAATGTATTT
TTATTGAGTGGAAAGGTTATTGTTGTGTGGCGAGCTCTTTCCCGCTCGCT
CTACTACAGCAGGTTGCGTACACGTGTGAATATCAGTGGAGGATACTGTG
AATGTTGCTTTGACAGAAAGAAATATGTCGCTCGACTAAATGATATCGTA
GCAGCTCCGCCGCGTGAGAAAGAGGGCATGATACATATGTTGCGTGACGA
CTCATAGAAGATCAAAGGGCGCGATTTACGTTATCAAAGATTCCCGTTAG
GGTAGTAACGGCCGTTTGATTAGTCGTTTGCATACAGTAGCGGTCTCCGG
TTGTTTCGGATGTAAATATGCGTGCAAAAAGTGTGTGGTGTTTTGAGTTG
GGACAATACCTGTGGTAATAGCAATGAAAACGTGCCAAGATCAACGGTAG
CTTCATGAAAGCTGCATTTTCAAGCGTGCTTAAAAATGTGTGCGTCGGTG
TGGTGCAAACCAACGCATGCACATTAAGGTCAGACGCCAAAATCACACCA
TCACTCTCGGCTGGAGCAACTTGATGTCGGTGAAGGGAAGGAAATGCTCT
TGACTTTCACGTTTGCAACTGTATACTTCGTTTGCATCAAGGTACCGACG
CGC back to topCoding sequence (CDS) from alignment at P-littoralis_Contig1003:21223..27275- >mRNA_P-littoralis_Contig1003.9.2 ID=mRNA_P-littoralis_Contig1003.9.2|Name=mRNA_P-littoralis_Contig1003.9.2|organism=Pylaiella littoralis U1_48|type=CDS|length=444bp|location=Sequence derived from alignment at P-littoralis_Contig1003:21223..27275- (Pylaiella littoralis U1_48) ATGGCAGCGGTAACTCCGAGAGACGCTCGTATCATTGCGGCTAGCCTTTC GTGTTTGCTCTTACTTTTTGGGTTCCAGACGGTGGGCGAAATGACGAATA TGGCGCTCTGGGGTCTTGCCGGCGTTTCGATGTGGAGCTGGGCCTTCACA GTTTCGGGTCGCCTCAAAACACGAGGCCATGTGGAGGATAATGTCCGTGT GGTACGCCACCAGAGCTTCGTGGTCTCAGCGCTTTGCTTCGGGACGGCAC TTGTTGGCACGATCGAGGCAATGATCGCATGTTACGTACAACCATGGTGG CTGCAGGTTCCCGCAAACATCGGGTTCACCCTCCTCGCGTTCGCCGTTGG TTGTAGCGTTTTCGGCTTTTCACATGACTGGGTTTCTCAAGATCCTAGGT TAGAAAAACCTCTTTTTCTGCTCGACATCTGCGTCGTGAGCTAA back to top
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