mRNA_P-littoralis_Contig1003.8.1 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1003.8.1 vs. uniprot
Match: D7FRA8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRA8_ECTSI) HSP 1 Score: 239 bits (611), Expect = 2.340e-79 Identity = 131/140 (93.57%), Postives = 136/140 (97.14%), Query Frame = 1 Query: 1 MNEDHGVQISFDDECRIRVLDPEQFKHSETLEKECRGFVDKIREFNTSVHTIVEVLHENAARIDKEKLRAIGQRNKVEGELEYRLRQKAALQTMLKEKMLELDRQNLQYKSLLRIESEQLALIERLSNSETLTEQ-APHK 417 MNED+GVQISFD+ECRIRVLDPEQFKHSE LE+ECRGFVDKIREFN SVHTIVEVLHENAARIDKEKLRAIGQRNKVEGELEYRLRQKA+LQTMLKEKMLELDRQNLQY+SLLRIESEQLALIERLSNSETLTEQ AP K Sbjct: 1 MNEDNGVQISFDEECRIRVLDPEQFKHSEMLEEECRGFVDKIREFNASVHTIVEVLHENAARIDKEKLRAIGQRNKVEGELEYRLRQKASLQTMLKEKMLELDRQNLQYQSLLRIESEQLALIERLSNSETLTEQEAPRK 140
BLAST of mRNA_P-littoralis_Contig1003.8.1 vs. uniprot
Match: A0A836CJD0_9STRA (Intraflagellar transport protein 20 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJD0_9STRA) HSP 1 Score: 159 bits (401), Expect = 2.580e-47 Identity = 82/130 (63.08%), Postives = 108/130 (83.08%), Query Frame = 1 Query: 7 EDHGVQISFDDECRIRVLDPEQFKHSETLEKECRGFVDKIREFNTSVHTIVEVLHENAARIDKEKLRAIGQRNKVEGELEYRLRQKAALQTMLKEKMLELDRQNLQYKSLLRIESEQLALIERLSNSETL 396 ++ VQ+SFD+ECR+RVLDP+ FKHSE LE+ C+ F K++ FN +VH IV VL +A+RI+K+KLRAIG RNKV+GE E+R RQ+ ALQ ++KEKM ELDR N+QY+SLLR+E+EQ ALIERLSNSE++ Sbjct: 6 QEEKVQVSFDEECRVRVLDPDVFKHSEELEENCKAFATKMQAFNAAVHGIVAVLDAHASRIEKQKLRAIGMRNKVDGEAEHRARQRMALQVLIKEKMSELDRNNVQYQSLLRVEAEQQALIERLSNSESV 135
BLAST of mRNA_P-littoralis_Contig1003.8.1 vs. uniprot
Match: A0A6V2PVC6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2PVC6_HETAK) HSP 1 Score: 142 bits (357), Expect = 7.840e-41 Identity = 77/129 (59.69%), Postives = 104/129 (80.62%), Query Frame = 1 Query: 10 DHGVQISFDDECRIRVLDPEQFKHSETLEKECRGFVDKIREFNTSVHTIVEVLHENAARIDKEKLRAIGQRNKVEGELEYRLRQKAALQTMLKEKMLELDRQNLQYKSLLRIESEQLALIERLSNSETL 396 D V+ISFDDE +IRVLD E+FKH+E LE+EC FV KI++F+++VH++VEVL + A RI+ KL+AIGQRN+VEGE E R RQ+ AL TM+ EK ELDR LQY+SL +E+EQLALIE+L+N++++ Sbjct: 2 DEKVEISFDDEYKIRVLDAEKFKHTEELERECTDFVKKIQDFHSNVHSLVEVLDKQAKRIEHAKLKAIGQRNQVEGERENRERQRIALNTMIAEKKAELDRYTLQYQSLKGVEAEQLALIEKLTNNDSI 130
BLAST of mRNA_P-littoralis_Contig1003.8.1 vs. uniprot
Match: A0A7S2V367_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V367_9STRA) HSP 1 Score: 140 bits (353), Expect = 3.270e-40 Identity = 75/124 (60.48%), Postives = 100/124 (80.65%), Query Frame = 1 Query: 19 VQISFDDECRIRVLDPEQFKHSETLEKECRGFVDKIREFNTSVHTIVEVLHENAARIDKEKLRAIGQRNKVEGELEYRLRQKAALQTMLKEKMLELDRQNLQYKSLLRIESEQLALIERLSNSE 390 V ISFDD+ RIRVLD E++KH+E LEKEC+ FV KI+ FNT+VHT+VEVL A RI+ KL+AIGQRN+VEGE E+R RQ+ AL T++ EK ELDR LQ++SL+ +E+EQ A++ERL+N++ Sbjct: 6 VSISFDDDYRIRVLDSEKYKHTEELEKECKEFVQKIQTFNTTVHTLVEVLDAQAKRIENAKLKAIGQRNQVEGEREHRERQRIALNTLIAEKKAELDRYTLQHQSLVIVEAEQAAMVERLTNND 129
BLAST of mRNA_P-littoralis_Contig1003.8.1 vs. uniprot
Match: A0A7S2W6I1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W6I1_9STRA) HSP 1 Score: 136 bits (342), Expect = 1.490e-38 Identity = 74/128 (57.81%), Postives = 100/128 (78.12%), Query Frame = 1 Query: 7 EDHGVQISFDDECRIRVLDPEQFKHSETLEKECRGFVDKIREFNTSVHTIVEVLHENAARIDKEKLRAIGQRNKVEGELEYRLRQKAALQTMLKEKMLELDRQNLQYKSLLRIESEQLALIERLSNSE 390 E++ V I FD+E R+RVLDPE+FKH+E L ++C GFV KI++F+ +VH +V+VL A +I++EKLRAIGQRN VE E+E R +K ALQ+ + EKM EL+R N QY SL+ +E+EQLALIE+LSN E Sbjct: 2 EENRVPICFDEESRVRVLDPEKFKHTEELAEQCTGFVSKIQDFSGTVHVLVDVLGAQADKIEREKLRAIGQRNMVESEVENRESKKRALQSQINEKMAELERFNKQYNSLVNLEAEQLALIEKLSNHE 129
BLAST of mRNA_P-littoralis_Contig1003.8.1 vs. uniprot
Match: A0A7S2BU93_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BU93_9STRA) HSP 1 Score: 136 bits (343), Expect = 2.030e-38 Identity = 75/131 (57.25%), Postives = 100/131 (76.34%), Query Frame = 1 Query: 1 MNEDHGVQISFDDECRIRVLDPEQFKHSETLEKECRGFVDKIREFNTSVHTIVEVLHENAARIDKEKLRAIGQRNKVEGELEYRLRQKAALQTMLKEKMLELDRQNLQYKSLLRIESEQLALIERLSNSET 393 ++++ V I FDDE RIRVL PE+FKH+E L ++C FV+KI +F+ +VH +VEVL A +I+ EKL+AIGQRN VE E E R R++ ALQ+ + EKM ELDR QY+SL R+E+EQLALIE+LSN+ET Sbjct: 22 VDDEKKVNICFDDESRIRVLSPEKFKHTEELAEQCTAFVNKIEDFSGTVHVLVEVLDAQAKKIELEKLKAIGQRNMVESETENRARRQLALQSQINEKMAELDRYAKQYQSLARVEAEQLALIEKLSNNET 152
BLAST of mRNA_P-littoralis_Contig1003.8.1 vs. uniprot
Match: A0A7S2GG26_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GG26_9STRA) HSP 1 Score: 123 bits (308), Expect = 2.470e-33 Identity = 66/130 (50.77%), Postives = 92/130 (70.77%), Query Frame = 1 Query: 1 MNEDHGVQISFDDECRIRVLDPEQFKHSETLEKECRGFVDKIREFNTSVHTIVEVLHENAARIDKEKLRAIGQRNKVEGELEYRLRQKAALQTMLKEKMLELDRQNLQYKSLLRIESEQLALIERLSNSE 390 M D V I FDDEC+IRVL PE+F H++ L ++C FV+KI +F+ +VH +VE+L A I+ EKLR IGQRN+VE E+++R RQ+ ALQ + EK EL+R + Y SL+RIE+EQ L++ SNS+ Sbjct: 5 MKNDDKVNICFDDECKIRVLSPEKFDHTKELAEQCTAFVNKIADFSDTVHVLVEILDSQAKMIETEKLRTIGQRNRVESEMDHRSRQQLALQAQIAEKKAELERCSKHYDSLVRIEAEQNKLLKNFSNSD 134
BLAST of mRNA_P-littoralis_Contig1003.8.1 vs. uniprot
Match: A0A067BLY1_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BLY1_SAPPC) HSP 1 Score: 113 bits (282), Expect = 2.020e-29 Identity = 63/123 (51.22%), Postives = 90/123 (73.17%), Query Frame = 1 Query: 22 QISFDDECRIRVLDPEQFKHSETLEKECRGFVDKIREFNTSVHTIVEVLHENAARIDKEKLRAIGQRNKVEGELEYRLRQKAALQTMLKEKMLELDRQNLQYKSLLRIESEQLALIERLSNSE 390 +I FDDE R+RVL+ E+F H++ LE EC FV K+ +F+++V ++E++ A RI+ EKL+AIGQRN+V+ E+E R RQK L+ ++KEK EL+R QY SL +IE EQ LIE+LSN+E Sbjct: 10 RICFDDEYRVRVLELEKFVHTQELETECNQFVSKMEDFHSTVKGVLEIMEAQAKRIELEKLKAIGQRNRVDNEIENRNRQKLMLEVLIKEKQTELERFCQQYISLTKIEDEQQQLIEKLSNNE 132
BLAST of mRNA_P-littoralis_Contig1003.8.1 vs. uniprot
Match: A0A7S1CRI3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CRI3_9STRA) HSP 1 Score: 112 bits (280), Expect = 3.610e-29 Identity = 65/127 (51.18%), Postives = 88/127 (69.29%), Query Frame = 1 Query: 10 DHGVQISFDDECRIRVLDPEQFKHSETLEKECRGFVDKIREFNTSVHTIVEVLHENAARIDKEKLRAIGQRNKVEGELEYRLRQKAALQTMLKEKMLELDRQNLQYKSLLRIESEQLALIERLSNSE 390 D V I+FDD+ R+RVL+ ++F + LE+ C FV KI FN +VH++VEVL +AA I+KEKLRAIG RN E E E R R+K ++ ++ EK LDR QY+SL ++E EQ ALIE+LSN+E Sbjct: 2 DSNVTITFDDKYRVRVLEADKFDQTRALEEACSTFVQKIEAFNATVHSLVEVLSTSAAAIEKEKLRAIGARNLSEAEPETRERRKKQIRALIAEKRAALDRLQRQYESLEKVEGEQRALIEKLSNNE 128
BLAST of mRNA_P-littoralis_Contig1003.8.1 vs. uniprot
Match: H3GSG3_PHYRM (Uncharacterized protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=H3GSG3_PHYRM) HSP 1 Score: 110 bits (275), Expect = 2.310e-28 Identity = 58/122 (47.54%), Postives = 88/122 (72.13%), Query Frame = 1 Query: 25 ISFDDECRIRVLDPEQFKHSETLEKECRGFVDKIREFNTSVHTIVEVLHENAARIDKEKLRAIGQRNKVEGELEYRLRQKAALQTMLKEKMLELDRQNLQYKSLLRIESEQLALIERLSNSE 390 I FDD+C++RVLD + H++ L++E F K+ EF+ V ++EV+ A RI++EKL+AIGQRN+V+ E+E R+RQK L+ +KEK EL+R NLQ++SL +I EQ L+++LSN+E Sbjct: 11 ICFDDDCQVRVLDKDNITHTQELDQESNQFATKLEEFHEIVKGVLEVMEGQAKRIEREKLKAIGQRNRVDSEVENRIRQKQMLELQIKEKKTELERYNLQFQSLTKIADEQQVLMDKLSNNE 132 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1003.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1003.8.1 >prot_P-littoralis_Contig1003.8.1 ID=prot_P-littoralis_Contig1003.8.1|Name=mRNA_P-littoralis_Contig1003.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=140bp MNEDHGVQISFDDECRIRVLDPEQFKHSETLEKECRGFVDKIREFNTSVHback to top mRNA from alignment at P-littoralis_Contig1003:19947..20989+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1003.8.1 ID=mRNA_P-littoralis_Contig1003.8.1|Name=mRNA_P-littoralis_Contig1003.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1043bp|location=Sequence derived from alignment at P-littoralis_Contig1003:19947..20989+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1003:19947..20989+ >mRNA_P-littoralis_Contig1003.8.1 ID=mRNA_P-littoralis_Contig1003.8.1|Name=mRNA_P-littoralis_Contig1003.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig1003:19947..20989+ (Pylaiella littoralis U1_48)back to top |