mRNA_P-littoralis_Contig1003.21.1 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1003.21.1 vs. uniprot
Match: A0A6H5KJU4_9PHAE (MULE domain-containing protein n=6 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJU4_9PHAE) HSP 1 Score: 103 bits (256), Expect = 4.710e-24 Identity = 48/91 (52.75%), Postives = 61/91 (67.03%), Query Frame = 1 Query: 1 NGNFNVSKDTTTYGARVHLNFGANGAKTEVSCTCAMFARWRIPSCDVITVGRESNKADEVMTLMDKAYHLDTYRGVYEDDRIRVLLPVQGE 273
NGNF V K + YG RV L FG +G T ++CTC R++IP CD+I VGR +K+DEVM+ +D AYHLDTYR +Y + R V LPV E
Sbjct: 229 NGNFTVRKLGSNYGNRVGLEFGTDGVVTRMTCTCGYTTRFKIPCCDIIAVGRALDKSDEVMSSIDPAYHLDTYRALYAESRFEVHLPVPDE 319
BLAST of mRNA_P-littoralis_Contig1003.21.1 vs. uniprot
Match: A0A6H5KEB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB7_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 1.470e-22 Identity = 46/91 (50.55%), Postives = 59/91 (64.84%), Query Frame = 1 Query: 1 NGNFNVSKDTTTYGARVHLNFGANGAKTEVSCTCAMFARWRIPSCDVITVGRESNKADEVMTLMDKAYHLDTYRGVYEDDRIRVLLPVQGE 273
NGNF V K + YG RV L FG +G T ++CTC ++IP D++ VGR +K+DEVM+ +D AYHLDTYR +Y D R V LPV E
Sbjct: 151 NGNFTVRKLGSNYGNRVGLEFGTDGVVTRMTCTCGYTTGFKIPCSDIVAVGRALDKSDEVMSSIDPAYHLDTYRALYADSRFEVQLPVPDE 241 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1003.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1003.21.1 >prot_P-littoralis_Contig1003.21.1 ID=prot_P-littoralis_Contig1003.21.1|Name=mRNA_P-littoralis_Contig1003.21.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=91bp NGNFNVSKDTTTYGARVHLNFGANGAKTEVSCTCAMFARWRIPSCDVITVback to top mRNA from alignment at P-littoralis_Contig1003:82286..83449- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1003.21.1 ID=mRNA_P-littoralis_Contig1003.21.1|Name=mRNA_P-littoralis_Contig1003.21.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1164bp|location=Sequence derived from alignment at P-littoralis_Contig1003:82286..83449- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1003:82286..83449- >mRNA_P-littoralis_Contig1003.21.1 ID=mRNA_P-littoralis_Contig1003.21.1|Name=mRNA_P-littoralis_Contig1003.21.1|organism=Pylaiella littoralis U1_48|type=CDS|length=273bp|location=Sequence derived from alignment at P-littoralis_Contig1003:82286..83449- (Pylaiella littoralis U1_48)back to top |