mRNA_P-littoralis_Contig1003.11.1 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1003.11.1 vs. uniprot
Match: D7FRA7_ECTSI (PRK domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRA7_ECTSI) HSP 1 Score: 399 bits (1026), Expect = 1.350e-134 Identity = 203/309 (65.70%), Postives = 247/309 (79.94%), Query Frame = 3 Query: 192 MSLSRALEELENRPAGEWLPDFEASTAADRLRQFIETNGGLPIEIDCRTEMLAVDDADLAETILPLCTWLKNLSEAKGG---RVVVGICGCAASGKSTLAQVLCASCCVLWGPSKFQSLSMDAYSFPNAHLSTESAEDHAGRPCTLKDIKGHPKTLDCASLLRDLNRLRVPNAQTILLPAYSRSLHDPVPDSVAVSPECQVVIVEGLHLLHREGRWKDISAALQRTVFLDIERSSCFERVVGRKIANGRSRESSEAHFDRVDGPIWDQLQEEKCRANLILTVSPTNCRQLYISDIVVKRFARDEQRVVP 1109 M+LS AL LE + +P E+S DR++Q IE GGLPIE DCR E+L V++ADLAE ILPLCTWLK +++ G RV+VG+CG AA+GKSTLAQ+LCA+ ++WG S Q +SMDAYS+PNAHL+ E E + GR CTLKDIKG PKTLDCASLLRDL RLR P+ ++I LPAYSR LHDPVPDSV V+P+C+VV+VEGLHLLH+EG WK+ISAAL RT+FLDI RS CF+RVVGRK+ANGRSRESSE+HFDRVDGP+WDQLQEEK RA+L+L V PT+ RQL++S+IV K AR E + VP Sbjct: 1 MALSDALAALEAQTGVSEMPPLESSHV-DRMKQAIEAAGGLPIERDCRKEILGVNEADLAEVILPLCTWLKGITQGPSGEGERVLVGLCGSAAAGKSTLAQILCAAYGIIWGASSIQCVSMDAYSYPNAHLAAEVTE-YLGRACTLKDIKGLPKTLDCASLLRDLGRLRTPSKESIKLPAYSRDLHDPVPDSVTVAPDCRVVLVEGLHLLHQEGLWKEISAALHRTIFLDISRSVCFDRVVGRKVANGRSRESSESHFDRVDGPVWDQLQEEKKRADLVLVVQPTSDRQLWVSNIVTK-LARGEPQPVP 306
BLAST of mRNA_P-littoralis_Contig1003.11.1 vs. uniprot
Match: UPI0013F4F0F9 (nucleoside/nucleotide kinase family protein n=4 Tax=Mycobacterium kubicae TaxID=120959 RepID=UPI0013F4F0F9) HSP 1 Score: 105 bits (263), Expect = 1.130e-22 Identity = 62/185 (33.51%), Postives = 100/185 (54.05%), Query Frame = 3 Query: 429 RVVVGICGCAASGKSTLAQVLCASCCVLWGPSKFQSLSMDAYSFPNAHLSTESAEDHAGRPCTLKDIKGHPKTLDCASLLRDLNRLRVPNAQTILLPAYSRSLHDPVPDSVAVSPECQVVIVEGLHLLHREGRWKDISAALQRTVFLDIERSSCFERVVGRKIANGRSRESSEAHFDRVDGPIWD 983 R++VG+ G SGKSTLA V+ G + MD + N L + + IKG P+T D + L R+R P+++T+ +P YSR +H+ + S+A++PE +V++EG +LL G W++IS+ + + FLDIE C +R++GR IA G+ ++ DR D +D Sbjct: 24 RMIVGLAGPPGSGKSTLASVVVDEINAR-GQYSAVVMPMDGFHLSNVQLEKKG----------IAAIKGAPETFDVDGFIATLARIRKPSSKTVYVPDYSRVVHESIAASIAITPETNIVVLEGNYLLLGSGAWQEISSYIDQPWFLDIEWDVCRQRLIGRHIATGKPPAAASEWVDRSDKANYD 197
BLAST of mRNA_P-littoralis_Contig1003.11.1 vs. uniprot
Match: A0A8E4PBK5_9MYCO (Nucleoside/nucleotide kinase family protein n=2 Tax=Mycobacterium kubicae TaxID=120959 RepID=A0A8E4PBK5_9MYCO) HSP 1 Score: 106 bits (264), Expect = 3.370e-22 Identity = 61/185 (32.97%), Postives = 100/185 (54.05%), Query Frame = 3 Query: 429 RVVVGICGCAASGKSTLAQVLCASCCVLWGPSKFQSLSMDAYSFPNAHLSTESAEDHAGRPCTLKDIKGHPKTLDCASLLRDLNRLRVPNAQTILLPAYSRSLHDPVPDSVAVSPECQVVIVEGLHLLHREGRWKDISAALQRTVFLDIERSSCFERVVGRKIANGRSRESSEAHFDRVDGPIWD 983 R++VG+ G SGKSTLA V+ G + MD + N L + + IKG P+T D + L R+R P+++T+ +P YSR +H+ + S+A++PE +V++EG +LL G W+++S+ + + FLDIE C +R++GR IA G+ ++ DR D +D Sbjct: 88 RMIVGLAGPPGSGKSTLASVVVDEINAR-GQYSAVVMPMDGFHLSNVQLEKKG----------IAAIKGAPETFDVDGFIATLARIRTPSSKTVYVPDYSRVVHESIAASIAITPETNIVVLEGNYLLLGSGAWQEVSSYIDQPWFLDIEWDVCRQRLIGRHIATGKPPAAASEWVDRSDKANYD 261
BLAST of mRNA_P-littoralis_Contig1003.11.1 vs. uniprot
Match: A0A1A3IEE7_9MYCO (Nucleoside/nucleotide kinase family protein n=2 Tax=Mycobacterium sp. 1423905.2 TaxID=1856859 RepID=A0A1A3IEE7_9MYCO) HSP 1 Score: 103 bits (256), Expect = 7.640e-22 Identity = 63/188 (33.51%), Postives = 99/188 (52.66%), Query Frame = 3 Query: 429 RVVVGICGCAASGKSTLAQVLCASCCVLWGPSKFQS---LSMDAYSFPNAHLSTESAEDHAGRPCTLKDIKGHPKTLDCASLLRDLNRLRVPNAQTILLPAYSRSLHDPVPDSVAVSPECQVVIVEGLHLLHREGRWKDISAALQRTVFLDIERSSCFERVVGRKIANGRSRESSEAHFDRVDGPIWD 983 R+++G+ G SGKSTLA VL + S + MD + N L + + IKG +T D L L R+R P QT+ +P Y R LH+PV S+A++PE +V++EG +LL G W+++SA + + FLD++ + C +R+V R IA G++ ++ DR D +D Sbjct: 11 RIIIGLAGPPGSGKSTLASVLVDEI----NAGEHHSAVVMPMDGFHLSNRQLRAKG----------IAPIKGARETFDVDGFLAALARIRKPGPQTVYVPDYRRDLHEPVAASIAITPETNIVVLEGNYLLLGCGPWREVSAYVDQPWFLDVDWNVCRQRLVARHIATGKASAAASEWVDRSDKANYD 184
BLAST of mRNA_P-littoralis_Contig1003.11.1 vs. uniprot
Match: A0A1X1XC39_9MYCO (Uncharacterized protein n=1 Tax=Mycobacterium kubicae TaxID=120959 RepID=A0A1X1XC39_9MYCO) HSP 1 Score: 96.7 bits (239), Expect = 5.640e-20 Identity = 44/119 (36.97%), Postives = 75/119 (63.03%), Query Frame = 3 Query: 627 IKGHPKTLDCASLLRDLNRLRVPNAQTILLPAYSRSLHDPVPDSVAVSPECQVVIVEGLHLLHREGRWKDISAALQRTVFLDIERSSCFERVVGRKIANGRSRESSEAHFDRVDGPIWD 983 IKG P+T D + L R+R P+++T+ +P YSR +H+ + S+A++PE +V++EG +LL G W+++S+ + + FLDIE C +R++GR IA G+ ++ DR D +D Sbjct: 23 IKGAPETFDVDGFIATLARIRTPSSKTVYVPDYSRVVHESIAASIAITPETNIVVLEGNYLLLGSGAWQEVSSYIDQPWFLDIEWDVCRQRLIGRHIATGKPPAAASEWVDRSDKANYD 141
BLAST of mRNA_P-littoralis_Contig1003.11.1 vs. uniprot
Match: A0A8J6ZPU2_9FIRM (Nucleoside/nucleotide kinase family protein n=1 Tax=Quinella sp. 1Q7 TaxID=1958789 RepID=A0A8J6ZPU2_9FIRM) HSP 1 Score: 97.1 bits (240), Expect = 3.550e-19 Identity = 68/239 (28.45%), Postives = 118/239 (49.37%), Query Frame = 3 Query: 318 IEIDCRTEMLAVDDADLAETILPLCTWLKNLSEAKGGRVVVGICGCAASGKSTLAQVLCASCCVLWGPSK-------FQSLSMDAYSFPNAHLSTESAEDHAGRPCTLKDIKGHPKTLDCASLLRDLNRLRVPNAQTILLPAYSRSLHDPVPDSVAVSPECQVVIVEGLHLLHREGRWKDISAALQRTVFLDIERSSCFERVVGRKIANGRSRESSEAHFDRVDGPIWDQLQEEKCRAN 1013 +E++ T+ + + + E +PL L +L +V+ + SGKST+AQ L W + ++L MD + + A+++ + E G+ ++DIKG P+T D L+ + LR + Y R +HD +PD +V E +V++EG +LL ++ W D+ +VF+D + ER+VGRKI G SRE++E FD D +++ + RA+ Sbjct: 10 MEVNGLTQEVRFSEQAVEEIFMPLLHELTDLRLTLDRKVIAYLVAPPGSGKSTVAQFL------EWLSRERSDEVDPIRALGMDGFHYTAAYMNVTNVE-RDGQQILMRDIKGAPETFDVDLLVEKIRELRQEGTDWNI---YDRRIHDVLPDYFSV--EDDIVLIEGNYLLLKDRGWTDVRVLADYSVFIDADADLLRERIVGRKIMGGSSREAAEKFFDFSDARNIERILKNSARAD 236
BLAST of mRNA_P-littoralis_Contig1003.11.1 vs. uniprot
Match: A0A6F8YQB7_9ACTN (PRK domain-containing protein n=1 Tax=Phytohabitans suffuscus TaxID=624315 RepID=A0A6F8YQB7_9ACTN) HSP 1 Score: 95.9 bits (237), Expect = 1.380e-18 Identity = 65/204 (31.86%), Postives = 105/204 (51.47%), Query Frame = 3 Query: 420 KGGRVVVGICGCAASGKSTLAQVLCASCCVLWGPSKFQSLSMDAYSFPNAHLSTESAEDHAGRPCTLKDIKGHPKTLDCASLLRDLNRLRVPNAQTILLPAYSRSLHDPVPDSVAVSPECQVVIVEGLHLLHREGRWKDISAALQRTVFLDIERSSCFERVVGRKIANGRSRESSEAHFDRVDGPIWDQLQEEKCRANLILTVS 1031 +G RVV+GI GC A+GKSTLA++L P+ + MD + HL+ ++A D GR + KG T D L L RLR +T+ P + R L P+ S+ V P+ +VV+ EG +LL W ++ A L T F++++ S ER++ R + G++ + + VD P + + RA+L++ +S Sbjct: 65 RGERVVLGIAGCPAAGKSTLAELLVRGLGAAGVPAAL--VPMDGF-----HLA-DAALDRLGR----RGRKGAIDTFDADGYLALLRRLRTDRRRTVWAPGFERHLEQPIAGSIGVDPDVRVVVTEGNYLLAGAEPWPEVRAELTETWFVELDEPSRRERLIARHVEFGKTPDEAVRWVSTVDDPNARLIAATRDRADLVVDMS 256
BLAST of mRNA_P-littoralis_Contig1003.11.1 vs. uniprot
Match: A0A6F8XJ61_9ACTN (Nucleoside/nucleotide kinase family protein n=1 Tax=Phytohabitans flavus TaxID=1076124 RepID=A0A6F8XJ61_9ACTN) HSP 1 Score: 94.0 bits (232), Expect = 2.020e-18 Identity = 66/220 (30.00%), Postives = 109/220 (49.55%), Query Frame = 3 Query: 387 LCTWLKNLSEAKGGRVVVGICGCAASGKSTLAQVLCASCCVLWGPSKFQSLSMDAYSFPNAHLSTESAEDHAGRPCTLKDIKGHPKTLDCASLLRDLNRLRVPNAQTILLPAYSRSLHDPVPDSVAVSPECQVVIVEGLHLLHREGRWKDISAALQRTVFLDIERSSCFERVVGRKIANGRSRESSEAHFDRVDGPIWDQLQEEKCRANLILTVSPTNCR 1046 L T L A R ++GI GC A+GKSTLA++L P+ + MD + HL+ + A D GR + KG T D L L R+R +T+ P ++R L P+ S+ V PE ++V+ EG +LL W D+ AAL T F++++ ER++ R + G++ + + VD P + + + RA+L++ ++ + R Sbjct: 5 LVTRAAALVAAGPERAILGIAGCPAAGKSTLAELLVGGLVAAGVPAAL--VPMDGF-----HLA-DVALDRLGR----RGRKGAIDTFDADGYLSLLRRVRTDRRRTVWAPGFARDLEQPIAGSIGVDPEVRIVVTEGNYLLADAPPWPDVRAALTETWFVELDEPLRRERLIARHVLFGKTPDEAGRWVSIVDDPNARLISQTRDRADLVVDMTLPDAR 212
BLAST of mRNA_P-littoralis_Contig1003.11.1 vs. uniprot
Match: A0A3N1HR76_9ACTN (Uncharacterized protein n=1 Tax=Pseudokineococcus lusitanus TaxID=763993 RepID=A0A3N1HR76_9ACTN) HSP 1 Score: 93.6 bits (231), Expect = 5.620e-18 Identity = 71/230 (30.87%), Postives = 108/230 (46.96%), Query Frame = 3 Query: 363 DLAETILPLCTWLKNLSEAKGGRVVVGICGCAASGKSTLAQVLCASCCV-------LWGPSKFQSLSMDAYSFPNAHLSTESAEDHAGRPCTLKDIKGHPKTLDCASLLRDLNRLRVPNAQTILLPAYSRSLHDPVPDSVAVSPECQVVIVEGLHLLHREGRWKDISAALQRTVFLDIERSSCFERVVGRKIANGRSRESSEAHFDRVDGPIWDQLQEEKCRANLILTVS 1031 DL E ++ L + A GGRV+VG+ G A+GK+TLAQ L A+ + GP+ Q + MD + + L + G L+D KG P T D + L RLR + + PA+ R L + +V V ++V+ EG +LL EG W L ++D E + ER++ R + G+SRE + A VD P + RA+L++ S Sbjct: 29 DLVERVVAL------VDAAGGGRVLVGVAGAPAAGKTTLAQALVAAADARLRGTGTVEGPAAVQ-VPMDGFHLADVEL------ERLG----LRDRKGTPPTFDAGGYVALLRRLRAADEDVVYAPAFERDLEQALAGAVPVPAGARLVVTEGNYLLLEEGPWSACGELLDEVWYVDAEEGAREERLLARHVEFGKSREEATAWMAAVDDPDAALAAGSRERADLVVPPS 241
BLAST of mRNA_P-littoralis_Contig1003.11.1 vs. uniprot
Match: UPI001E36A83B (nucleoside/nucleotide kinase family protein n=1 Tax=Blastococcus sp. URHD0036 TaxID=1380356 RepID=UPI001E36A83B) HSP 1 Score: 92.4 bits (228), Expect = 7.520e-18 Identity = 69/206 (33.50%), Postives = 104/206 (50.49%), Query Frame = 3 Query: 429 RVVVGICGCAASGKSTLAQVLCASCCVLWGPSKFQSLSMDAYSFPNAHLSTESAEDHAGRPCTLKDIKGHPKTLDCASLLRDLNRLRVPNAQTILLPAYSRSLHDPVPDSVAVSPECQVVIVEGLHLLHREGRWKDISAALQRTVFLDIERSSCFERVVGRKIANGRSRESSEAHFDRVDGPIWDQLQEEKCRANLILTVSPTNCR 1046 RV++GI G A+GKSTLA L + C P+ + MD + HL+ +SA D GR +D KG T D L L RLR T+ PA+ R L PV S+AV P ++V+ EG +LL E W D+ AL ++ ++ ++ R++ R + G+S +++ A VD P + + RA+L L S + R Sbjct: 22 RVLLGIAGAPAAGKSTLATWLVSRLCARGLPAV--GVPMDGF-----HLA-DSALDALGR----RDRKGAVDTFDGHGYLALLRRLRAEQETTVYAPAFERDLEQPVAGSIAVPPGTRIVVSEGNYLLLEEPPWPDVWGALDEVWYVGLDDATRRARLLDRHVRFGKSPDAARAWVAAVDDPNAELIAATSGRADLCLDTSGLDLR 215 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1003.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1003.11.1 >prot_P-littoralis_Contig1003.11.1 ID=prot_P-littoralis_Contig1003.11.1|Name=mRNA_P-littoralis_Contig1003.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=307bp MSLSRALEELENRPAGEWLPDFEASTAADRLRQFIETNGGLPIEIDCRTEback to top mRNA from alignment at P-littoralis_Contig1003:27413..30537+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1003.11.1 ID=mRNA_P-littoralis_Contig1003.11.1|Name=mRNA_P-littoralis_Contig1003.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3125bp|location=Sequence derived from alignment at P-littoralis_Contig1003:27413..30537+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1003:27413..30537+ >mRNA_P-littoralis_Contig1003.11.1 ID=mRNA_P-littoralis_Contig1003.11.1|Name=mRNA_P-littoralis_Contig1003.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=921bp|location=Sequence derived from alignment at P-littoralis_Contig1003:27413..30537+ (Pylaiella littoralis U1_48)back to top |