mRNA_P-littoralis_Contig1002.26.1 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1002.26.1 vs. uniprot
Match: A0A6H5JXZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ6_9PHAE) HSP 1 Score: 203 bits (517), Expect = 1.040e-60 Identity = 104/164 (63.41%), Postives = 127/164 (77.44%), Query Frame = 2 Query: 152 PTLKVRRIVDHEMVAHCDPNVIHQPNISAEKLSKMWAGVKAKWNQPHANWRGTSGNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAVSSAIAGMAPLL 643 P VR+IVD E V+H +PN+I QPNISAEK++KMW+ KAKWN P ANW+ SGNNQPW++FCQGD+D +++G AI+KYPELDQVCN LLPED QREDDGTG G GGAERRA+AKREG RL+ NR G K+ KK R QSVA+AT A+ +A+ + PLL Sbjct: 96 PRHNVRKIVDDEQVSHVNPNIIQQPNISAEKITKMWSAAKAKWNTPIANWKSESGNNQPWLSFCQGDTDTYILGCAIEKYPELDQVCNNLLPEDAQREDDGTGEGDGCTGGAERRAAAKREGARLYEQNRRGTKQ-KKQGRRQSVAEATSVAMKTALLDIEPLL 258
BLAST of mRNA_P-littoralis_Contig1002.26.1 vs. uniprot
Match: D7FJ39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ39_ECTSI) HSP 1 Score: 200 bits (509), Expect = 1.290e-58 Identity = 104/164 (63.41%), Postives = 126/164 (76.83%), Query Frame = 2 Query: 152 PTLKVRRIVDHEMVAHCDPNVIHQPNISAEKLSKMWAGVKAKWNQPHANWRGTSGNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAVSSAIAGMAPLL 643 P +VR+IVD E V+H DPN+I QPNISAEKLS+MWA KAKWNQP+A+W+ SGNNQPW++FCQG +D +++G AI+KYPEL+QVCN LLPE QREDDGTG GGA+RRA+AKREG RLH NR GKK+ K QSVA+AT A+ +AI M PLL Sbjct: 233 PDHQVRKIVDDEQVSHVDPNIIQQPNISAEKLSRMWATAKAKWNQPYADWKSESGNNQPWLSFCQGCTDTYVLGCAIEKYPELNQVCNNLLPEGAQREDDGTGEGIVGTGGADRRAAAKREGARLHEQNRRGKKQKNKGV-GQSVAEATSAAMKTAIKDMEPLL 395
BLAST of mRNA_P-littoralis_Contig1002.26.1 vs. uniprot
Match: A0A6H5JZX9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZX9_9PHAE) HSP 1 Score: 196 bits (497), Expect = 4.640e-56 Identity = 101/164 (61.59%), Postives = 124/164 (75.61%), Query Frame = 2 Query: 152 PTLKVRRIVDHEMVAHCDPNVIHQPNISAEKLSKMWAGVKAKWNQPHANWRGTSGNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAVSSAIAGMAPLL 643 P VR+IVD E V+H +PN+I QPNISAEK++KMW+ KAKWN P+ANW+ SGNNQPW++FCQGD+D +++G AI+KYPELDQVCN LP D QREDDGTG G GGAERRASAKREG RL NR G K+ KK Q+VA+AT A+ +A+ + PLL Sbjct: 254 PRHHVRKIVDDEQVSHVNPNIIQQPNISAEKITKMWSAAKAKWNTPNANWKSESGNNQPWLSFCQGDTDTYILGCAIEKYPELDQVCNNPLPVDAQREDDGTGEGDGCTGGAERRASAKREGARLDEQNRRGTKQKKKGG-GQNVAEATSVAMKTALLDIEPLL 416
BLAST of mRNA_P-littoralis_Contig1002.26.1 vs. uniprot
Match: A0A6H5KNY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNY9_9PHAE) HSP 1 Score: 194 bits (494), Expect = 1.090e-55 Identity = 101/164 (61.59%), Postives = 125/164 (76.22%), Query Frame = 2 Query: 152 PTLKVRRIVDHEMVAHCDPNVIHQPNISAEKLSKMWAGVKAKWNQPHANWRGTSGNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAVSSAIAGMAPLL 643 P VR VD E+V+H +PN+I QPNISAEK++KMW+ KAKWN P+ANW+ SGNNQPW++FCQGD+D +++G AI+KYPELDQVCN LLPED QREDDGTG G GGAER A+AKREG RL+ NR G + KK R QSVA+AT A+ +A+ + PLL Sbjct: 260 PRHNVRISVDDELVSHVNPNIIQQPNISAEKITKMWSAAKAKWNTPNANWKRESGNNQPWLSFCQGDTDTYILGCAIEKYPELDQVCNNLLPEDAQREDDGTGDGNGCTGGAERLAAAKREGARLYEQNRRGTMQKKKGGR-QSVAEATSVAMKTALLEVEPLL 422
BLAST of mRNA_P-littoralis_Contig1002.26.1 vs. uniprot
Match: A0A6H5KFU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFU0_9PHAE) HSP 1 Score: 193 bits (491), Expect = 3.260e-54 Identity = 101/164 (61.59%), Postives = 123/164 (75.00%), Query Frame = 2 Query: 152 PTLKVRRIVDHEMVAHCDPNVIHQPNISAEKLSKMWAGVKAKWNQPHANWRGTSGNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAVSSAIAGMAPLL 643 P VR+IVD E V+H +PN+I QPNISAEK++KMW+ KAKWN P+ANW+ SGNNQPW++F QGD+D +++G AI+KYPELDQVCN LP D QREDDGTG G GGAERRASAKREG RL NR G K+ KK QSVA+AT A+ +A+ + PLL Sbjct: 416 PRHHVRKIVDDEQVSHVNPNIIQQPNISAEKITKMWSAAKAKWNTPNANWKSESGNNQPWLSFAQGDTDTYILGCAIEKYPELDQVCNNPLPVDAQREDDGTGEGDGCTGGAERRASAKREGARLDEQNRRGTKQKKKGG-GQSVAEATSVAMKTALLDIEPLL 578
BLAST of mRNA_P-littoralis_Contig1002.26.1 vs. uniprot
Match: A0A6H5KKV3_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKV3_9PHAE) HSP 1 Score: 194 bits (494), Expect = 4.250e-54 Identity = 101/164 (61.59%), Postives = 125/164 (76.22%), Query Frame = 2 Query: 152 PTLKVRRIVDHEMVAHCDPNVIHQPNISAEKLSKMWAGVKAKWNQPHANWRGTSGNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAVSSAIAGMAPLL 643 P +VR+IVD + V+H DPN+I QPNISAEKLS+MWA KAKWNQP+ANW+ SGNNQPW++FCQG +D +++G AI+KYPEL+QVCN LLPE QREDDGTG GGA+RRA+AKREG RL+ NR GKK K QSVA+AT A+ +A+ + PLL Sbjct: 468 PDHQVRKIVDDQQVSHVDPNIIQQPNISAEKLSRMWATAKAKWNQPYANWKSESGNNQPWLSFCQGCTDTYVLGCAIEKYPELNQVCNNLLPEGAQREDDGTGEGIVCTGGADRRAAAKREGARLNEQNRRGKKPKNKGV-GQSVAEATSAAMKTALKDIEPLL 630
BLAST of mRNA_P-littoralis_Contig1002.26.1 vs. uniprot
Match: D7FU69_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU69_ECTSI) HSP 1 Score: 186 bits (471), Expect = 3.770e-52 Identity = 90/134 (67.16%), Postives = 107/134 (79.85%), Query Frame = 2 Query: 152 PTLKVRRIVDHEMVAHCDPNVIHQPNISAEKLSKMWAGVKAKWNQPHANWRGTSGNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKK 553 P +VR+IVD E V+H DPN+I QPNISAEKLS+MWA KAKWNQP+ANW+ SGNNQPW++FCQG +D +++G AI+KYPEL+QVCN LLPE QREDD TG GGA+RRA+AKREG RLH NR GKK Sbjct: 356 PDHQVRKIVDDEQVSHVDPNIIQQPNISAEKLSRMWATAKAKWNQPYANWKSESGNNQPWLSFCQGCTDTYVLGCAIEKYPELNQVCNNLLPEGAQREDDWTGEGIVGTGGADRRAAAKREGARLHEQNRRGKK 489
BLAST of mRNA_P-littoralis_Contig1002.26.1 vs. uniprot
Match: A0A6H5KNM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNM0_9PHAE) HSP 1 Score: 184 bits (466), Expect = 1.740e-49 Identity = 95/154 (61.69%), Postives = 119/154 (77.27%), Query Frame = 2 Query: 152 PTLKVRRIVDHEMVAHCDPNVIHQPNISAEKLSKMWAGVKAKWNQPHANWRGT-SGNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAV 610 P VR+IVD E +H +PN+I QP+I AEK++K W+ KAKWN P+ANW+ + SGNNQPW++FCQGD+D +++G AI+KYPELDQVCN LLPED QREDDGTG G GGAERRA+AKREG RL+ NR G K+ K+ R QSVA+AT A+ Sbjct: 790 PRHNVRKIVDDEQASHVNPNIIQQPDIFAEKITKTWSAAKAKWNTPNANWKKSESGNNQPWLSFCQGDTDTYILGCAIEKYPELDQVCNNLLPEDAQREDDGTGEGDGCTGGAERRAAAKREGARLYEQNRRGTKQKKEGGR-QSVAEATSVAM 942
BLAST of mRNA_P-littoralis_Contig1002.26.1 vs. uniprot
Match: A0A6H5JSN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN7_9PHAE) HSP 1 Score: 162 bits (411), Expect = 1.310e-42 Identity = 86/160 (53.75%), Postives = 108/160 (67.50%), Query Frame = 2 Query: 164 VRRIVDHEMVAHCDPNVIHQPNISAEKLSKMWAGVKAKWNQPHANWRGTSGNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAVSSAIAGMAPLL 643 VR+IVD V+H +PN+I QPN SAEK++ W+ +A WN P+ANW SGNNQPWV+F QGD+D +++G A +KYPELDQVCN LLPED QREDDGTG GGAERR +AKREG RL N +SVA+A A+ +A+ + PLL Sbjct: 395 VRKIVDDGQVSHVNPNIIQQPNRSAEKITNTWSAARANWNTPYANWTSESGNNQPWVSFSQGDTDTYILGCAFEKYPELDQVCNNLLPEDAQREDDGTGEGDACTGGAERRTAAKREGARLDEQNXXXXXXXXXXX-GKSVAEAMSVAMKTALLDIEPLL 553
BLAST of mRNA_P-littoralis_Contig1002.26.1 vs. uniprot
Match: A0A6H5KQ52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ52_9PHAE) HSP 1 Score: 156 bits (394), Expect = 3.740e-42 Identity = 84/164 (51.22%), Postives = 107/164 (65.24%), Query Frame = 2 Query: 152 PTLKVRRIVDHEMVAHCDPNVIHQPNISAEKLSKMWAGVKAKWNQPHANWRGTSGNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAVSSAIAGMAPLL 643 P VR+IVD E V+H N+I QPNISAEK++ M + KAKWN P+ANW+ GNNQPW++FCQGD+D +++G A++KYPELDQVCN LLPED QREDD TG G + NR G K+ KK R QSVA+AT A+ +A+ + PLL Sbjct: 130 PRHNVRKIVDDEQVSHVIANIIQQPNISAEKITPMRSAAKAKWNTPNANWKSEPGNNQPWLSFCQGDTDTYILGCAVEKYPELDQVCNNLLPEDAQREDDRTGEGDG--------------WREAYEQNRRGTKQKKKGGR-QSVAEATSVAMKTALLDIEPLL 278 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1002.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1002.26.1 >prot_P-littoralis_Contig1002.26.1 ID=prot_P-littoralis_Contig1002.26.1|Name=mRNA_P-littoralis_Contig1002.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=188bp MVAHCDPNVIHQPNISAEKLSKMWAGVKAKWNQPHANWRGTSGNNQPWVNback to top mRNA from alignment at P-littoralis_Contig1002:83552..85537+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1002.26.1 ID=mRNA_P-littoralis_Contig1002.26.1|Name=mRNA_P-littoralis_Contig1002.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1986bp|location=Sequence derived from alignment at P-littoralis_Contig1002:83552..85537+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1002:83552..85537+ >mRNA_P-littoralis_Contig1002.26.1 ID=mRNA_P-littoralis_Contig1002.26.1|Name=mRNA_P-littoralis_Contig1002.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=564bp|location=Sequence derived from alignment at P-littoralis_Contig1002:83552..85537+ (Pylaiella littoralis U1_48)back to top |