mRNA_P-littoralis_Contig1002.23.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1002.23.1 vs. uniprot
Match: A0A6H5L680_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L680_9PHAE) HSP 1 Score: 79.0 bits (193), Expect = 1.380e-15 Identity = 52/94 (55.32%), Postives = 65/94 (69.15%), Query Frame = 2
Query: 110 GREYNVADLFAIMDAEDAVEAAAEGGGSSESGATGSCGGTXXXXXXXXXXXXXXGTAERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLD 391
G +Y+VADL+ M+ ED E A GGS+ +G++ S GG XXXXX T ERKGPHCMMRLVGIL ED +RPL+++SRLQA R +LD
Sbjct: 16 GVDYSVADLYNAMEKEDQTELADSAGGSAPTGSS-STGGAVGPDGXXXXXGSGSNT-ERKGPHCMMRLVGILCEDSIRPLVMNSRLQATRQELD 107
BLAST of mRNA_P-littoralis_Contig1002.23.1 vs. uniprot
Match: D7FSJ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ6_ECTSI) HSP 1 Score: 73.2 bits (178), Expect = 6.650e-13 Identity = 59/95 (62.11%), Postives = 66/95 (69.47%), Query Frame = 2
Query: 110 GREYNVADLFAIMDAEDAVEAAAEGGGSSESGATGSCGGTXXXXXXXXXXXXXXGT-AERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLD 391
G +Y+ ADL+ MD ED E G + S TGS XXXXXXXXXXXXX G+ ERKGPHCMMRLVGIL ED +RPLLIDSR QA R +LD
Sbjct: 91 GVDYSAADLYDAMDKEDEEELGDFGDSAGGSAPTGSXXXXXXXXXXXXXXXXXSGSNTERKGPHCMMRLVGILCEDFIRPLLIDSRFQATRQELD 185
BLAST of mRNA_P-littoralis_Contig1002.23.1 vs. uniprot
Match: A0A6H5K6G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6G9_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 6.250e-11 Identity = 55/92 (59.78%), Postives = 61/92 (66.30%), Query Frame = 2
Query: 116 EYNVADLFAIMDAEDAVEAAAEGGGSSESGATGSCGGTXXXXXXXXXXXXXXGTAERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLD 391
EY+ ADLF + ED A GGS+ +G GS XXXXXXXXXXXX ER GPHCMMRLVGIL ED +RPLL +SRLQA R LD
Sbjct: 291 EYSAADLFDALAEEDEAATADSAGGSAPTG--GSSXXXXXXXXXXXXXXXSGSNTERNGPHCMMRLVGILCEDVIRPLLTESRLQATRQDLD 380
BLAST of mRNA_P-littoralis_Contig1002.23.1 vs. uniprot
Match: A0A6H5KTC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC6_9PHAE) HSP 1 Score: 63.5 bits (153), Expect = 4.530e-10 Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 2
Query: 278 AERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQL 388
AERKGPHCMMRLVGIL ED +RPLLI+SRLQA R L
Sbjct: 90 AERKGPHCMMRLVGILCEDAIRPLLIESRLQATRQDL 126
BLAST of mRNA_P-littoralis_Contig1002.23.1 vs. uniprot
Match: A0A6H5J7W8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7W8_9PHAE) HSP 1 Score: 65.1 bits (157), Expect = 1.030e-9 Identity = 52/94 (55.32%), Postives = 61/94 (64.89%), Query Frame = 2
Query: 110 GREYNVADLFAIMDAEDAVEAAAEGGGSSESGATGSCGGTXXXXXXXXXXXXXXGTAERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLD 391
G +Y+VADL+ M+ E+ E GG XXXXXXXXXXXX ERKGPHCMMRLVGIL ED +RPL+I+SRLQA R +LD
Sbjct: 309 GVDYSVADLYDAMEKENTPELEDSAGGXXXXX-------XXXXXXXXXXXXXSGSITERKGPHCMMRLVGILCEDSIRPLVINSRLQATRQELD 395
BLAST of mRNA_P-littoralis_Contig1002.23.1 vs. uniprot
Match: A0A6H5JZX9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZX9_9PHAE) HSP 1 Score: 65.1 bits (157), Expect = 1.040e-9 Identity = 52/94 (55.32%), Postives = 61/94 (64.89%), Query Frame = 2
Query: 110 GREYNVADLFAIMDAEDAVEAAAEGGGSSESGATGSCGGTXXXXXXXXXXXXXXGTAERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLD 391
G +Y+VADL+ M+ E+ E GG XXXXXXXXXXXX ERKGPHCMMRLVGIL ED +RPL+I+SRLQA R +LD
Sbjct: 147 GVDYSVADLYDAMEKENTPELEDSAGGXXXXX-------XXXXXXXXXXXXXSGSITERKGPHCMMRLVGILCEDSIRPLVINSRLQATRQELD 233
BLAST of mRNA_P-littoralis_Contig1002.23.1 vs. uniprot
Match: A0A6H5JCR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCR0_9PHAE) HSP 1 Score: 63.9 bits (154), Expect = 1.040e-9 Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 2
Query: 281 ERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLD 391
ERKGPHCMMRLVGIL ED +RPL+I+SRLQA R +LD
Sbjct: 171 ERKGPHCMMRLVGILCEDSIRPLVINSRLQATRQELD 207
BLAST of mRNA_P-littoralis_Contig1002.23.1 vs. uniprot
Match: A0A6H5KQ52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ52_9PHAE) HSP 1 Score: 64.3 bits (155), Expect = 1.690e-9 Identity = 52/94 (55.32%), Postives = 61/94 (64.89%), Query Frame = 2
Query: 110 GREYNVADLFAIMDAEDAVEAAAEGGGSSESGATGSCGGTXXXXXXXXXXXXXXGTAERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLD 391
G +Y+VADL+ M+ ED E +S XXXXXXXXXXXX ERKGPHCMMRLVGIL ED +RPL+I+SRLQA R +LD
Sbjct: 23 GVDYSVADLYDAMEKEDKPEL-------EDSAGXXXXXXXXXXXXXXXXXXXSGNITERKGPHCMMRLVGILCEDSIRPLVINSRLQATRQELD 109
BLAST of mRNA_P-littoralis_Contig1002.23.1 vs. uniprot
Match: A0A6H5JWQ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWQ7_9PHAE) HSP 1 Score: 64.3 bits (155), Expect = 1.880e-9 Identity = 50/94 (53.19%), Postives = 59/94 (62.77%), Query Frame = 2
Query: 110 GREYNVADLFAIMDAEDAVEAAAEGGGSSESGATGSCGGTXXXXXXXXXXXXXXGTAERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLD 391
G +Y+VADL+ M+ ED E +S XXXXXXXXXX ERKGPHCMMRLVGIL ED +RPL+I+SRLQA R +LD
Sbjct: 310 GVDYSVADLYDAMEKEDKPEL-------EDSAGXXXXXXXXXXXXXXXXXEGSGSITERKGPHCMMRLVGILCEDSIRPLVINSRLQATRQELD 396
BLAST of mRNA_P-littoralis_Contig1002.23.1 vs. uniprot
Match: A0A6H5K7K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K9_9PHAE) HSP 1 Score: 63.9 bits (154), Expect = 1.990e-9 Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 2
Query: 281 ERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLD 391
ERKGPHCMMRLVGIL ED +RPL+I+SRLQA R +LD
Sbjct: 208 ERKGPHCMMRLVGILCEDSIRPLVINSRLQATRQELD 244 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1002.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1002.23.1 >prot_P-littoralis_Contig1002.23.1 ID=prot_P-littoralis_Contig1002.23.1|Name=mRNA_P-littoralis_Contig1002.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=130bp RKNSTDEAIPAEVVLALRATLTLVRVDRNSSTPFKFGPRVQRSRPLRHHGback to top mRNA from alignment at P-littoralis_Contig1002:82989..83381+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1002.23.1 ID=mRNA_P-littoralis_Contig1002.23.1|Name=mRNA_P-littoralis_Contig1002.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig1002:82989..83381+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1002:82989..83381+ >mRNA_P-littoralis_Contig1002.23.1 ID=mRNA_P-littoralis_Contig1002.23.1|Name=mRNA_P-littoralis_Contig1002.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=390bp|location=Sequence derived from alignment at P-littoralis_Contig1002:82989..83381+ (Pylaiella littoralis U1_48)back to top |