mRNA_P-littoralis_Contig1002.23.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1002.23.1
Unique NamemRNA_P-littoralis_Contig1002.23.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1002.23.1 vs. uniprot
Match: A0A6H5L680_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L680_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.380e-15
Identity = 52/94 (55.32%), Postives = 65/94 (69.15%), Query Frame = 2
Query:  110 GREYNVADLFAIMDAEDAVEAAAEGGGSSESGATGSCGGTXXXXXXXXXXXXXXGTAERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLD 391
            G +Y+VADL+  M+ ED  E A   GGS+ +G++ S GG      XXXXX     T ERKGPHCMMRLVGIL ED +RPL+++SRLQA R +LD
Sbjct:   16 GVDYSVADLYNAMEKEDQTELADSAGGSAPTGSS-STGGAVGPDGXXXXXGSGSNT-ERKGPHCMMRLVGILCEDSIRPLVMNSRLQATRQELD 107          
BLAST of mRNA_P-littoralis_Contig1002.23.1 vs. uniprot
Match: D7FSJ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ6_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 6.650e-13
Identity = 59/95 (62.11%), Postives = 66/95 (69.47%), Query Frame = 2
Query:  110 GREYNVADLFAIMDAEDAVEAAAEGGGSSESGATGSCGGTXXXXXXXXXXXXXXGT-AERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLD 391
            G +Y+ ADL+  MD ED  E    G  +  S  TGS    XXXXXXXXXXXXX G+  ERKGPHCMMRLVGIL ED +RPLLIDSR QA R +LD
Sbjct:   91 GVDYSAADLYDAMDKEDEEELGDFGDSAGGSAPTGSXXXXXXXXXXXXXXXXXSGSNTERKGPHCMMRLVGILCEDFIRPLLIDSRFQATRQELD 185          
BLAST of mRNA_P-littoralis_Contig1002.23.1 vs. uniprot
Match: A0A6H5K6G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6G9_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 6.250e-11
Identity = 55/92 (59.78%), Postives = 61/92 (66.30%), Query Frame = 2
Query:  116 EYNVADLFAIMDAEDAVEAAAEGGGSSESGATGSCGGTXXXXXXXXXXXXXXGTAERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLD 391
            EY+ ADLF  +  ED    A   GGS+ +G  GS    XXXXXXXXXXXX     ER GPHCMMRLVGIL ED +RPLL +SRLQA R  LD
Sbjct:  291 EYSAADLFDALAEEDEAATADSAGGSAPTG--GSSXXXXXXXXXXXXXXXSGSNTERNGPHCMMRLVGILCEDVIRPLLTESRLQATRQDLD 380          
BLAST of mRNA_P-littoralis_Contig1002.23.1 vs. uniprot
Match: A0A6H5KTC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC6_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 4.530e-10
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 2
Query:  278 AERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQL 388
            AERKGPHCMMRLVGIL ED +RPLLI+SRLQA R  L
Sbjct:   90 AERKGPHCMMRLVGILCEDAIRPLLIESRLQATRQDL 126          
BLAST of mRNA_P-littoralis_Contig1002.23.1 vs. uniprot
Match: A0A6H5J7W8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7W8_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.030e-9
Identity = 52/94 (55.32%), Postives = 61/94 (64.89%), Query Frame = 2
Query:  110 GREYNVADLFAIMDAEDAVEAAAEGGGSSESGATGSCGGTXXXXXXXXXXXXXXGTAERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLD 391
            G +Y+VADL+  M+ E+  E     GG             XXXXXXXXXXXX     ERKGPHCMMRLVGIL ED +RPL+I+SRLQA R +LD
Sbjct:  309 GVDYSVADLYDAMEKENTPELEDSAGGXXXXX-------XXXXXXXXXXXXXSGSITERKGPHCMMRLVGILCEDSIRPLVINSRLQATRQELD 395          
BLAST of mRNA_P-littoralis_Contig1002.23.1 vs. uniprot
Match: A0A6H5JZX9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZX9_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.040e-9
Identity = 52/94 (55.32%), Postives = 61/94 (64.89%), Query Frame = 2
Query:  110 GREYNVADLFAIMDAEDAVEAAAEGGGSSESGATGSCGGTXXXXXXXXXXXXXXGTAERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLD 391
            G +Y+VADL+  M+ E+  E     GG             XXXXXXXXXXXX     ERKGPHCMMRLVGIL ED +RPL+I+SRLQA R +LD
Sbjct:  147 GVDYSVADLYDAMEKENTPELEDSAGGXXXXX-------XXXXXXXXXXXXXSGSITERKGPHCMMRLVGILCEDSIRPLVINSRLQATRQELD 233          
BLAST of mRNA_P-littoralis_Contig1002.23.1 vs. uniprot
Match: A0A6H5JCR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCR0_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.040e-9
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 2
Query:  281 ERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLD 391
            ERKGPHCMMRLVGIL ED +RPL+I+SRLQA R +LD
Sbjct:  171 ERKGPHCMMRLVGILCEDSIRPLVINSRLQATRQELD 207          
BLAST of mRNA_P-littoralis_Contig1002.23.1 vs. uniprot
Match: A0A6H5KQ52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ52_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.690e-9
Identity = 52/94 (55.32%), Postives = 61/94 (64.89%), Query Frame = 2
Query:  110 GREYNVADLFAIMDAEDAVEAAAEGGGSSESGATGSCGGTXXXXXXXXXXXXXXGTAERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLD 391
            G +Y+VADL+  M+ ED  E         +S         XXXXXXXXXXXX     ERKGPHCMMRLVGIL ED +RPL+I+SRLQA R +LD
Sbjct:   23 GVDYSVADLYDAMEKEDKPEL-------EDSAGXXXXXXXXXXXXXXXXXXXSGNITERKGPHCMMRLVGILCEDSIRPLVINSRLQATRQELD 109          
BLAST of mRNA_P-littoralis_Contig1002.23.1 vs. uniprot
Match: A0A6H5JWQ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWQ7_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.880e-9
Identity = 50/94 (53.19%), Postives = 59/94 (62.77%), Query Frame = 2
Query:  110 GREYNVADLFAIMDAEDAVEAAAEGGGSSESGATGSCGGTXXXXXXXXXXXXXXGTAERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLD 391
            G +Y+VADL+  M+ ED  E         +S         XXXXXXXXXX       ERKGPHCMMRLVGIL ED +RPL+I+SRLQA R +LD
Sbjct:  310 GVDYSVADLYDAMEKEDKPEL-------EDSAGXXXXXXXXXXXXXXXXXEGSGSITERKGPHCMMRLVGILCEDSIRPLVINSRLQATRQELD 396          
BLAST of mRNA_P-littoralis_Contig1002.23.1 vs. uniprot
Match: A0A6H5K7K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K9_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.990e-9
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 2
Query:  281 ERKGPHCMMRLVGILVEDDVRPLLIDSRLQANRAQLD 391
            ERKGPHCMMRLVGIL ED +RPL+I+SRLQA R +LD
Sbjct:  208 ERKGPHCMMRLVGILCEDSIRPLVINSRLQATRQELD 244          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1002.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5L680_9PHAE1.380e-1555.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSJ6_ECTSI6.650e-1362.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6G9_9PHAE6.250e-1159.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTC6_9PHAE4.530e-1081.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7W8_9PHAE1.030e-955.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZX9_9PHAE1.040e-955.32Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCR0_9PHAE1.040e-978.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ52_9PHAE1.690e-955.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWQ7_9PHAE1.880e-953.19Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7K9_9PHAE1.990e-978.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1002contigP-littoralis_Contig1002:82989..83381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size395
Hectar predicted targeting categoryother localisation
Exons1
Cds size390
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789343.920693-CDS-P-littoralis_Contig1002:82988..833781680789343.920693-CDS-P-littoralis_Contig1002:82988..83378Pylaiella littoralis U1_48CDSP-littoralis_Contig1002 82989..83378 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789343.9293177-UTR-P-littoralis_Contig1002:83378..833811680789343.9293177-UTR-P-littoralis_Contig1002:83378..83381Pylaiella littoralis U1_48UTRP-littoralis_Contig1002 83379..83381 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1002.23.1prot_P-littoralis_Contig1002.23.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1002 82989..83378 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1002.23.1

>prot_P-littoralis_Contig1002.23.1 ID=prot_P-littoralis_Contig1002.23.1|Name=mRNA_P-littoralis_Contig1002.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=130bp
RKNSTDEAIPAEVVLALRATLTLVRVDRNSSTPFKFGPRVQRSRPLRHHG
RRRRRRGCGRGRRKFREWCHRVVRRHCCGGGGWRRRWSGGWHRGAERAAL
HDAARRHSRRGRRSPAAHRQSASGESCSA*
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mRNA from alignment at P-littoralis_Contig1002:82989..83381+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1002.23.1 ID=mRNA_P-littoralis_Contig1002.23.1|Name=mRNA_P-littoralis_Contig1002.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig1002:82989..83381+ (Pylaiella littoralis U1_48)
CGCAAGAACTCCACGGACGAGGCAATCCCCGCCGAGGTAGTTCTCGCGCT CCGGGCCACGTTGACGCTGGTTCGCGTCGACCGCAACTCGAGTACGCCCT TCAAGTTCGGGCCGAGAGTACAACGTAGCCGACCTCTTCGCCATCATGGA CGCCGAAGACGCCGTCGAGGCTGCGGCAGAGGGCGGAGGAAGTTCCGAGA GTGGTGCCACCGGGTCGTGCGGCGGCACTGCTGCGGGGGCGGGGGGTGGC GGCGCCGCTGGAGCGGGGGTTGGCACCGCGGAGCGGAAAGGGCCGCACTG CATGATGCGGCTCGTCGGCATTCTCGTAGAGGACGACGTTCGCCCGCTGC TCATAGACAGTCGGCTTCAGGCGAATCGTGCTCAGCTTGATGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1002:82989..83381+

>mRNA_P-littoralis_Contig1002.23.1 ID=mRNA_P-littoralis_Contig1002.23.1|Name=mRNA_P-littoralis_Contig1002.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=390bp|location=Sequence derived from alignment at P-littoralis_Contig1002:82989..83381+ (Pylaiella littoralis U1_48)
CGCAAGAACTCCACGGACGAGGCAATCCCCGCCGAGGTAGTTCTCGCGCT
CCGGGCCACGTTGACGCTGGTTCGCGTCGACCGCAACTCGAGTACGCCCT
TCAAGTTCGGGCCGAGAGTACAACGTAGCCGACCTCTTCGCCATCATGGA
CGCCGAAGACGCCGTCGAGGCTGCGGCAGAGGGCGGAGGAAGTTCCGAGA
GTGGTGCCACCGGGTCGTGCGGCGGCACTGCTGCGGGGGCGGGGGGTGGC
GGCGCCGCTGGAGCGGGGGTTGGCACCGCGGAGCGGAAAGGGCCGCACTG
CATGATGCGGCTCGTCGGCATTCTCGTAGAGGACGACGTTCGCCCGCTGC
TCATAGACAGTCGGCTTCAGGCGAATCGTGCTCAGCTTGA
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