mRNA_P-littoralis_Contig1002.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1002.20.1
Unique NamemRNA_P-littoralis_Contig1002.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1002.20.1 vs. uniprot
Match: D7FQ54_ECTSI (Calcium-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ54_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 1.870e-28
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1
Query:    1 LELVGIMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKLAC 156
            LELVGIMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKLAC
Sbjct:   57 LELVGIMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKLAC 108          
BLAST of mRNA_P-littoralis_Contig1002.20.1 vs. uniprot
Match: A0A7S2UWF2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWF2_9STRA)

HSP 1 Score: 109 bits (273), Expect = 7.550e-28
Identity = 58/110 (52.73%), Postives = 76/110 (69.09%), Query Frame = 1
Query:    1 LELVGIMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKLACESMRQSVRLVSFELCDSSGTGKIEQDDMEQLLISINDTASYFGDPVLKRAQIKVRNKD 330
            LE+VGI+ESD EILDRLF+M DKTG+DQI ++EFV GLAPL  G   +K+            SFEL D  GTG+++Q +M  +L S N+TASYFGDPV+ + QI+   +D
Sbjct:   57 LEVVGIVESDAEILDRLFTMVDKTGDDQIPFREFVVGLAPLITGDAADKIQ----------FSFELYDLDGTGQLQQQEMIDVLTSQNNTASYFGDPVMSKEQIEQLGED 156          
BLAST of mRNA_P-littoralis_Contig1002.20.1 vs. uniprot
Match: A0A7S2FTB5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FTB5_9STRA)

HSP 1 Score: 102 bits (255), Expect = 4.420e-25
Identity = 50/99 (50.51%), Postives = 72/99 (72.73%), Query Frame = 1
Query:   16 IMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKLACESMRQSVRLVSFELCDSSGTGKIEQDDMEQLLISINDTASYFGDPVLKRAQI 312
            I+ESD+EILDRLF+M DKTG+ QIN++EF+ G++PL  GTVE+KL            +FE+ D  GTG +++ +M  +L+++NDT+SYFGDPVL R  +
Sbjct:   63 IVESDSEILDRLFTMLDKTGDQQINFREFICGISPLITGTVEQKLH----------FAFEMYDVDGTGVVKEPEMNFILMAMNDTSSYFGDPVLTRDDV 151          
BLAST of mRNA_P-littoralis_Contig1002.20.1 vs. uniprot
Match: A0A7S3H521_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H521_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 8.800e-21
Identity = 46/104 (44.23%), Postives = 68/104 (65.38%), Query Frame = 1
Query:    1 LELVGIMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKLACESMRQSVRLVSFELCDSSGTGKIEQDDMEQLLISINDTASYFGDPVLKRAQI 312
            L +VGI ++D +ILDRLF+M+DK+G+DQINY++F+ G+APL  GT +EK+            +  L DS G+  ++  D+  +L  +N  ASYFGDPV+   QI
Sbjct:   57 LSIVGINQNDADILDRLFTMYDKSGDDQINYRDFIVGIAPLISGTHQEKID----------FALRLFDSEGSSYMKARDIVNVLSQMNRVASYFGDPVMTEEQI 150          
BLAST of mRNA_P-littoralis_Contig1002.20.1 vs. uniprot
Match: A0A1V9YQM0_9STRA (EF-hand domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YQM0_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.290e-20
Identity = 51/114 (44.74%), Postives = 68/114 (59.65%), Query Frame = 1
Query:    1 LELVGIMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKLACESMRQSVR----LVSFELCDSSGTGKIEQDDMEQLLISINDTASYFGDPVLKRAQIKVRNKD 330
            L+ V   ESD  ILDRLF+M DKTG+D INY+EF+ G+APL  G +  K+A  S+  S      +V+FE+ D   TG+I       LL +++  ASYFGDP L +  I V   D
Sbjct:   75 LDHVNFFESDRAILDRLFTMLDKTGDDVINYQEFLVGVAPLVKGNLLSKIARTSLAASPLTLSYVVTFEMYDEDSTGEINAKGFRFLLTTVSTVASYFGDPQLSKKDIVVLTND 188          
BLAST of mRNA_P-littoralis_Contig1002.20.1 vs. uniprot
Match: A0A7S1C8Q8_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C8Q8_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.750e-20
Identity = 47/110 (42.73%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    1 LELVGIMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKLACESMRQSVRLVSFELCDSSGTGKIEQDDMEQLLISINDTASYFGDPVLKRAQIKVRNKD 330
            L +V + ESD E+LDRLF+MFD TG+ QIN+KEFV G++ +  GT+EEKL            SF + D   +GK+  ++M+ +L S+N+T SYFGD     ++I    K+
Sbjct:   58 LHIVKVEESDKELLDRLFTMFDDTGDGQINFKEFVCGISTILRGTLEEKLT----------FSFHMFDVDNSGKVSPEEMKSVLHSMNNTVSYFGDEKADESKIDTLVKE 157          
BLAST of mRNA_P-littoralis_Contig1002.20.1 vs. uniprot
Match: A0A482SV94_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SV94_9ARCH)

HSP 1 Score: 89.4 bits (220), Expect = 6.920e-20
Identity = 45/104 (43.27%), Postives = 66/104 (63.46%), Query Frame = 1
Query:    1 LELVGIMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKLACESMRQSVRLVSFELCDSSGTGKIEQDDMEQLLISINDTASYFGDPVLKRAQI 312
            L +VG+ ++D +ILDRLF+M+DK+G+DQI YK+F+ G+APL  GT  EK+             F L D+ GT  ++  +M  +L  +N  ASYFGDPV+   Q+
Sbjct:   57 LAIVGVNQNDADILDRLFTMYDKSGDDQIIYKDFIVGIAPLISGTHVEKID----------FGFRLFDTDGTSYLKAKEMINVLSQMNRVASYFGDPVMTEEQV 150          
BLAST of mRNA_P-littoralis_Contig1002.20.1 vs. uniprot
Match: A0A6U0XRU6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0XRU6_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.320e-19
Identity = 44/104 (42.31%), Postives = 67/104 (64.42%), Query Frame = 1
Query:    1 LELVGIMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKLACESMRQSVRLVSFELCDSSGTGKIEQDDMEQLLISINDTASYFGDPVLKRAQI 312
            L + GI+++D E+LDRLF+MFD+TG+DQ+ ++EF+ G A L    V+EKL            +F++ D  G G + ++D+ ++L SIN TASYFGD  L   Q+
Sbjct:   57 LSVAGIVDTDKEVLDRLFTMFDRTGDDQVYFREFISGFAALITSDVKEKLH----------FAFQMYDLEGLGNLAKEDILKVLSSINRTASYFGDACLTEEQV 150          
BLAST of mRNA_P-littoralis_Contig1002.20.1 vs. uniprot
Match: A0A835YSC2_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSC2_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.330e-19
Identity = 45/104 (43.27%), Postives = 67/104 (64.42%), Query Frame = 1
Query:    1 LELVGIMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKLACESMRQSVRLVSFELCDSSGTGKIEQDDMEQLLISINDTASYFGDPVLKRAQI 312
            LE  GI ++DTE+L RL ++ DKTG++++    F+ GLAPLC G+VEEKL            + EL D++GTG++   D+  +L +IND A+YFGDP +   +I
Sbjct:   15 LEAAGIGDADTEMLLRLHTLADKTGDERVATAAFLSGLAPLCGGSVEEKLT----------FALELYDAAGTGRVSAQDLMAVLTAINDAAAYFGDPCVAADEI 108          
BLAST of mRNA_P-littoralis_Contig1002.20.1 vs. uniprot
Match: F0Y4M1_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4M1_AURAN)

HSP 1 Score: 84.3 bits (207), Expect = 5.280e-19
Identity = 44/104 (42.31%), Postives = 67/104 (64.42%), Query Frame = 1
Query:    1 LELVGIMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKLACESMRQSVRLVSFELCDSSGTGKIEQDDMEQLLISINDTASYFGDPVLKRAQI 312
            L+ + + E+D EIL+RLF+MFDK G+ QINY+EFV G++PL  G V +KL            +FEL D   TG ++  +M  +L ++N+ AS+FGDP ++  +I
Sbjct:   10 LDEISVAEADAEILERLFTMFDKMGDGQINYREFVVGVSPLARGDVPQKLQ----------FAFELYDVDETGHVKAAEMCFVLNAMNNVASWFGDPAMQPDEI 103          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1002.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ54_ECTSI1.870e-28100.00Calcium-binding protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2UWF2_9STRA7.550e-2852.73Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2FTB5_9STRA4.420e-2550.51Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3H521_9STRA8.800e-2144.23Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A1V9YQM0_9STRA1.290e-2044.74EF-hand domain-containing protein n=1 Tax=Achlya h... [more]
A0A7S1C8Q8_9STRA1.750e-2042.73Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A482SV94_9ARCH6.920e-2043.27Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A6U0XRU6_9STRA1.320e-1942.31Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835YSC2_9STRA1.330e-1943.27EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
F0Y4M1_AURAN5.280e-1942.31Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1002contigP-littoralis_Contig1002:76296..77141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog112098.XP_008609716.1
Model size330
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.09e-19
EggNOG OGs2EAJT@1|root,2SGTA@2759|Eukaryota
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-01_007440.1
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789344.2638464-CDS-P-littoralis_Contig1002:76295..764411680789344.2638464-CDS-P-littoralis_Contig1002:76295..76441Pylaiella littoralis U1_48CDSP-littoralis_Contig1002 76296..76441 -
1680789344.2759862-CDS-P-littoralis_Contig1002:76957..771231680789344.2759862-CDS-P-littoralis_Contig1002:76957..77123Pylaiella littoralis U1_48CDSP-littoralis_Contig1002 76958..77123 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789344.2846053-UTR-P-littoralis_Contig1002:77123..771411680789344.2846053-UTR-P-littoralis_Contig1002:77123..77141Pylaiella littoralis U1_48UTRP-littoralis_Contig1002 77124..77141 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1002.20.1prot_P-littoralis_Contig1002.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1002 76296..77123 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1002.20.1

>prot_P-littoralis_Contig1002.20.1 ID=prot_P-littoralis_Contig1002.20.1|Name=mRNA_P-littoralis_Contig1002.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
MESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKLACESMR
QSVRLVSFELCDSSGTGKIEQDDMEQLLISINDTASYFGDPVLKRAQIKV
RNKD
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mRNA from alignment at P-littoralis_Contig1002:76296..77141-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1002.20.1 ID=mRNA_P-littoralis_Contig1002.20.1|Name=mRNA_P-littoralis_Contig1002.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=846bp|location=Sequence derived from alignment at P-littoralis_Contig1002:76296..77141- (Pylaiella littoralis U1_48)
CTGGAGCTGGTGGGCATCATGGAGTCGGACACCGAGATTCTAGACCGGCT GTTCAGCATGTTTGACAAGACGGGGAACGACCAGATCAACTACAAGGAAT TTGTCGGCGGGCTGGCACCTCTGTGCCACGGGACTGTCGAGGAAAAGCTT GCCTGTGAGTCCATGCGTCAATCGGTACGGCTCGGTTCGCATCGATTCGA TTCGGTTCGGATTGGTTCAGTTCGGATCGGTTCGAATGGGTTTGGTTCGG ATCAGTCCGGTTCGGTTCGGGGGGGTGGGTGGGGGGGCTGCTGTCTTCTT GCCTCACCTATGTACTGCCCCTGCATGGCAGTGTGAGTGTGGGTGTACGT GGGCGCTGTCGACTTGTTAGGCGGACTTATTTTGTCGGTGGCCCAAAGGC GGGACGTGGCCAGCCGCGCGGCGCGATTTGCTGCCGTCCGTCCAATGCTG CCGTCCGTCCGTCCGTCTGTCTGTCTGTCTGTCTGTCTGCCTGCCTGCCT TCCGCGCACGAAAAAGTGCCGACCTTACGGAGGAACGTCCGCTTTTATCC CCCAATCTGTGACGGCTCACTTTCTGCTCTTGCTCTGTTTTCTTGCCCCG CTTTCGCTCTGTCGGATTCTGCTGCTGCTGCTGCTTCTACTGATGTCGCT TCTGCCTGCGTTAATTTGTGCCCCCTCATATAAAACAAACAAAATTAAAG TCTCTTTTGAGCTCTGCGACTCCAGTGGCACCGGCAAGATCGAGCAGGAT GACATGGAGCAGCTCCTCATCTCCATCAACGACACCGCCAGCTACTTCGG AGACCCAGTGCTCAAGCGCGCACAGATCAAGGTGAGGAACAAAGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1002:76296..77141-

>mRNA_P-littoralis_Contig1002.20.1 ID=mRNA_P-littoralis_Contig1002.20.1|Name=mRNA_P-littoralis_Contig1002.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig1002:76296..77141- (Pylaiella littoralis U1_48)
ATGGAGTCGGACACCGAGATTCTAGACCGGCTGTTCAGCATGTTTGACAA
GACGGGGAACGACCAGATCAACTACAAGGAATTTGTCGGCGGGCTGGCAC
CTCTGTGCCACGGGACTGTCGAGGAAAAGCTTGCCTGTGAGTCCATGCGT
CAATCGGTACGGCTCGTCTCTTTTGAGCTCTGCGACTCCAGTGGCACCGG
CAAGATCGAGCAGGATGACATGGAGCAGCTCCTCATCTCCATCAACGACA
CCGCCAGCTACTTCGGAGACCCAGTGCTCAAGCGCGCACAGATCAAGGTG
AGGAACAAAGAC
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