mRNA_P-littoralis_Contig1002.20.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1002.20.1 vs. uniprot
Match: D7FQ54_ECTSI (Calcium-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ54_ECTSI) HSP 1 Score: 108 bits (271), Expect = 1.870e-28 Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1
Query: 1 LELVGIMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKLAC 156
LELVGIMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKLAC
Sbjct: 57 LELVGIMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKLAC 108
BLAST of mRNA_P-littoralis_Contig1002.20.1 vs. uniprot
Match: A0A7S2UWF2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWF2_9STRA) HSP 1 Score: 109 bits (273), Expect = 7.550e-28 Identity = 58/110 (52.73%), Postives = 76/110 (69.09%), Query Frame = 1
Query: 1 LELVGIMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKLACESMRQSVRLVSFELCDSSGTGKIEQDDMEQLLISINDTASYFGDPVLKRAQIKVRNKD 330
LE+VGI+ESD EILDRLF+M DKTG+DQI ++EFV GLAPL G +K+ SFEL D GTG+++Q +M +L S N+TASYFGDPV+ + QI+ +D
Sbjct: 57 LEVVGIVESDAEILDRLFTMVDKTGDDQIPFREFVVGLAPLITGDAADKIQ----------FSFELYDLDGTGQLQQQEMIDVLTSQNNTASYFGDPVMSKEQIEQLGED 156
BLAST of mRNA_P-littoralis_Contig1002.20.1 vs. uniprot
Match: A0A7S2FTB5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FTB5_9STRA) HSP 1 Score: 102 bits (255), Expect = 4.420e-25 Identity = 50/99 (50.51%), Postives = 72/99 (72.73%), Query Frame = 1
Query: 16 IMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKLACESMRQSVRLVSFELCDSSGTGKIEQDDMEQLLISINDTASYFGDPVLKRAQI 312
I+ESD+EILDRLF+M DKTG+ QIN++EF+ G++PL GTVE+KL +FE+ D GTG +++ +M +L+++NDT+SYFGDPVL R +
Sbjct: 63 IVESDSEILDRLFTMLDKTGDQQINFREFICGISPLITGTVEQKLH----------FAFEMYDVDGTGVVKEPEMNFILMAMNDTSSYFGDPVLTRDDV 151
BLAST of mRNA_P-littoralis_Contig1002.20.1 vs. uniprot
Match: A0A7S3H521_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H521_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 8.800e-21 Identity = 46/104 (44.23%), Postives = 68/104 (65.38%), Query Frame = 1
Query: 1 LELVGIMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKLACESMRQSVRLVSFELCDSSGTGKIEQDDMEQLLISINDTASYFGDPVLKRAQI 312
L +VGI ++D +ILDRLF+M+DK+G+DQINY++F+ G+APL GT +EK+ + L DS G+ ++ D+ +L +N ASYFGDPV+ QI
Sbjct: 57 LSIVGINQNDADILDRLFTMYDKSGDDQINYRDFIVGIAPLISGTHQEKID----------FALRLFDSEGSSYMKARDIVNVLSQMNRVASYFGDPVMTEEQI 150
BLAST of mRNA_P-littoralis_Contig1002.20.1 vs. uniprot
Match: A0A1V9YQM0_9STRA (EF-hand domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YQM0_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 1.290e-20 Identity = 51/114 (44.74%), Postives = 68/114 (59.65%), Query Frame = 1
Query: 1 LELVGIMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKLACESMRQSVR----LVSFELCDSSGTGKIEQDDMEQLLISINDTASYFGDPVLKRAQIKVRNKD 330
L+ V ESD ILDRLF+M DKTG+D INY+EF+ G+APL G + K+A S+ S +V+FE+ D TG+I LL +++ ASYFGDP L + I V D
Sbjct: 75 LDHVNFFESDRAILDRLFTMLDKTGDDVINYQEFLVGVAPLVKGNLLSKIARTSLAASPLTLSYVVTFEMYDEDSTGEINAKGFRFLLTTVSTVASYFGDPQLSKKDIVVLTND 188
BLAST of mRNA_P-littoralis_Contig1002.20.1 vs. uniprot
Match: A0A7S1C8Q8_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C8Q8_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 1.750e-20 Identity = 47/110 (42.73%), Postives = 69/110 (62.73%), Query Frame = 1
Query: 1 LELVGIMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKLACESMRQSVRLVSFELCDSSGTGKIEQDDMEQLLISINDTASYFGDPVLKRAQIKVRNKD 330
L +V + ESD E+LDRLF+MFD TG+ QIN+KEFV G++ + GT+EEKL SF + D +GK+ ++M+ +L S+N+T SYFGD ++I K+
Sbjct: 58 LHIVKVEESDKELLDRLFTMFDDTGDGQINFKEFVCGISTILRGTLEEKLT----------FSFHMFDVDNSGKVSPEEMKSVLHSMNNTVSYFGDEKADESKIDTLVKE 157
BLAST of mRNA_P-littoralis_Contig1002.20.1 vs. uniprot
Match: A0A482SV94_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SV94_9ARCH) HSP 1 Score: 89.4 bits (220), Expect = 6.920e-20 Identity = 45/104 (43.27%), Postives = 66/104 (63.46%), Query Frame = 1
Query: 1 LELVGIMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKLACESMRQSVRLVSFELCDSSGTGKIEQDDMEQLLISINDTASYFGDPVLKRAQI 312
L +VG+ ++D +ILDRLF+M+DK+G+DQI YK+F+ G+APL GT EK+ F L D+ GT ++ +M +L +N ASYFGDPV+ Q+
Sbjct: 57 LAIVGVNQNDADILDRLFTMYDKSGDDQIIYKDFIVGIAPLISGTHVEKID----------FGFRLFDTDGTSYLKAKEMINVLSQMNRVASYFGDPVMTEEQV 150
BLAST of mRNA_P-littoralis_Contig1002.20.1 vs. uniprot
Match: A0A6U0XRU6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0XRU6_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 1.320e-19 Identity = 44/104 (42.31%), Postives = 67/104 (64.42%), Query Frame = 1
Query: 1 LELVGIMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKLACESMRQSVRLVSFELCDSSGTGKIEQDDMEQLLISINDTASYFGDPVLKRAQI 312
L + GI+++D E+LDRLF+MFD+TG+DQ+ ++EF+ G A L V+EKL +F++ D G G + ++D+ ++L SIN TASYFGD L Q+
Sbjct: 57 LSVAGIVDTDKEVLDRLFTMFDRTGDDQVYFREFISGFAALITSDVKEKLH----------FAFQMYDLEGLGNLAKEDILKVLSSINRTASYFGDACLTEEQV 150
BLAST of mRNA_P-littoralis_Contig1002.20.1 vs. uniprot
Match: A0A835YSC2_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSC2_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 1.330e-19 Identity = 45/104 (43.27%), Postives = 67/104 (64.42%), Query Frame = 1
Query: 1 LELVGIMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKLACESMRQSVRLVSFELCDSSGTGKIEQDDMEQLLISINDTASYFGDPVLKRAQI 312
LE GI ++DTE+L RL ++ DKTG++++ F+ GLAPLC G+VEEKL + EL D++GTG++ D+ +L +IND A+YFGDP + +I
Sbjct: 15 LEAAGIGDADTEMLLRLHTLADKTGDERVATAAFLSGLAPLCGGSVEEKLT----------FALELYDAAGTGRVSAQDLMAVLTAINDAAAYFGDPCVAADEI 108
BLAST of mRNA_P-littoralis_Contig1002.20.1 vs. uniprot
Match: F0Y4M1_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4M1_AURAN) HSP 1 Score: 84.3 bits (207), Expect = 5.280e-19 Identity = 44/104 (42.31%), Postives = 67/104 (64.42%), Query Frame = 1
Query: 1 LELVGIMESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKLACESMRQSVRLVSFELCDSSGTGKIEQDDMEQLLISINDTASYFGDPVLKRAQI 312
L+ + + E+D EIL+RLF+MFDK G+ QINY+EFV G++PL G V +KL +FEL D TG ++ +M +L ++N+ AS+FGDP ++ +I
Sbjct: 10 LDEISVAEADAEILERLFTMFDKMGDGQINYREFVVGVSPLARGDVPQKLQ----------FAFELYDVDETGHVKAAEMCFVLNAMNNVASWFGDPAMQPDEI 103 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1002.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1002.20.1 >prot_P-littoralis_Contig1002.20.1 ID=prot_P-littoralis_Contig1002.20.1|Name=mRNA_P-littoralis_Contig1002.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp MESDTEILDRLFSMFDKTGNDQINYKEFVGGLAPLCHGTVEEKLACESMRback to top mRNA from alignment at P-littoralis_Contig1002:76296..77141- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1002.20.1 ID=mRNA_P-littoralis_Contig1002.20.1|Name=mRNA_P-littoralis_Contig1002.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=846bp|location=Sequence derived from alignment at P-littoralis_Contig1002:76296..77141- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1002:76296..77141- >mRNA_P-littoralis_Contig1002.20.1 ID=mRNA_P-littoralis_Contig1002.20.1|Name=mRNA_P-littoralis_Contig1002.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig1002:76296..77141- (Pylaiella littoralis U1_48)back to top |