Homology
BLAST of mRNA_P-littoralis_Contig100.99.1 vs. uniprot
Match: A0A6H5KAF3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF3_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 1.140e-14 Identity = 34/79 (43.04%), Postives = 50/79 (63.29%), Query Frame = 1 Query: 1 MTAEGSPSGGWSAFKNYYTPQADAEKERARQEWYDLRQGLNEAPKQFFSRVTVLESKLCRHGIVMEERETNTHVIRRLS 237
+ A+GSPSGGW F NYY P+A AEKER +++ L + E P+ +F R VL S+L HG++ + + N H++ LS
Sbjct: 94 IIADGSPSGGWKIFLNYYEPRARAEKERLSSQYHGLEMKVGETPQDYFGRFAVLRSRLAPHGVIFSDEDANAHMVYHLS 172
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Stop | 0 |
Start | 1 |
Model size | 256 |
Hectar predicted targeting category | other localisation |
Exons | 1 |
Cds size | 255 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1680789341.1333237-CDS-P-littoralis_Contig100:380756..381011 | 1680789341.1333237-CDS-P-littoralis_Contig100:380756..381011 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig100 380757..381011 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig100.99.1 >prot_P-littoralis_Contig100.99.1 ID=prot_P-littoralis_Contig100.99.1|Name=mRNA_P-littoralis_Contig100.99.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=85bp
MTAEGSPSGGWSAFKNYYTPQADAEKERARQEWYDLRQGLNEAPKQFFSR VTVLESKLCRHGIVMEERETNTHVIRRLSSLFNTQ back to topmRNA from alignment at P-littoralis_Contig100:380757..381011+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig100.99.1 ID=mRNA_P-littoralis_Contig100.99.1|Name=mRNA_P-littoralis_Contig100.99.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=255bp|location=Sequence derived from alignment at P-littoralis_Contig100:380757..381011+ (Pylaiella littoralis U1_48) ATGACGGCGGAAGGTAGTCCCAGTGGAGGGTGGTCTGCGTTCAAGAATTA
CTACACTCCGCAGGCAGATGCTGAGAAAGAAAGAGCACGACAAGAATGGT
ATGATTTGCGCCAGGGACTGAACGAAGCACCAAAGCAGTTTTTCTCCAGG
GTAACAGTGCTGGAAAGTAAACTTTGTAGACATGGGATTGTAATGGAGGA
GAGAGAAACAAACACGCATGTGATCCGCCGGTTGTCGTCGCTGTTTAACA
CGCAA back to topCoding sequence (CDS) from alignment at P-littoralis_Contig100:380757..381011+ >mRNA_P-littoralis_Contig100.99.1 ID=mRNA_P-littoralis_Contig100.99.1|Name=mRNA_P-littoralis_Contig100.99.1|organism=Pylaiella littoralis U1_48|type=CDS|length=255bp|location=Sequence derived from alignment at P-littoralis_Contig100:380757..381011+ (Pylaiella littoralis U1_48) ATGACGGCGGAAGGTAGTCCCAGTGGAGGGTGGTCTGCGTTCAAGAATTA CTACACTCCGCAGGCAGATGCTGAGAAAGAAAGAGCACGACAAGAATGGT ATGATTTGCGCCAGGGACTGAACGAAGCACCAAAGCAGTTTTTCTCCAGG GTAACAGTGCTGGAAAGTAAACTTTGTAGACATGGGATTGTAATGGAGGA GAGAGAAACAAACACGCATGTGATCCGCCGGTTGTCGTCGCTGTTTAACA CGCAA back to top
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