mRNA_P-littoralis_Contig100.96.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig100.96.1
Unique NamemRNA_P-littoralis_Contig100.96.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig100.96.1 vs. uniprot
Match: A0A6H5KCJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ5_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 7.410e-27
Identity = 72/138 (52.17%), Postives = 93/138 (67.39%), Query Frame = 1
Query:    1 QKAQQQAXXXXXXSGVRRSADSAVADPVIAALRGDGSTRSGLEMSQPAE*EKA---------DALLAALDSMGAENALRRLEEVGSQFARETRAQMRELQDKLA--------MKQAQKQGRTTEGRRTLETLLTAEAF 363
            QKAQQ++      SGVRR+ADSAVADPVI ALRG G TRS ++ S+PAE E A         +  LA++DSMG ENAL  LE++GS FA++T  ++REL+ K +        ++QAQ Q RT EGR TL+T+LTA AF
Sbjct:   29 QKAQQRSGGSSRSSGVRRTADSAVADPVITALRGGGRTRSRVQTSEPAEQETAPVNWRQHATETFLASMDSMGYENALLHLEKIGSTFAKDTLVRLRELEAKASTAVSLERVIEQAQMQRRTIEGRHTLQTILTAAAF 166          
BLAST of mRNA_P-littoralis_Contig100.96.1 vs. uniprot
Match: A0A6H5KI10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI10_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 2.130e-26
Identity = 72/138 (52.17%), Postives = 93/138 (67.39%), Query Frame = 1
Query:    1 QKAQQQAXXXXXXSGVRRSADSAVADPVIAALRGDGSTRSGLEMSQPAE*EK---------ADALLAALDSMGAENALRRLEEVGSQFARETRAQMRELQDKL--------AMKQAQKQGRTTEGRRTLETLLTAEAF 363
            QKAQQ++      SGVRR+ADSAVADPVI ALRG G TRS ++ S+P E E           +  LA++DSMG ENALR L+++GS FA++T  ++REL+ K         A++QA KQ RTTEGR TL+T+LTA AF
Sbjct:   71 QKAQQRSGGSSRSSGVRRTADSAVADPVITALRGGGRTRSRVQTSEPVEQETEPVNWRQHATETFLASMDSMGHENALRHLKKIGSTFAKDTLVRLRELEAKASTAVSLERAIEQAPKQPRTTEGRHTLQTILTAAAF 208          
BLAST of mRNA_P-littoralis_Contig100.96.1 vs. uniprot
Match: A0A6H5K847_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K847_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 5.500e-23
Identity = 74/137 (54.01%), Postives = 94/137 (68.61%), Query Frame = 1
Query:    1 QKAQQQAXXXXXXSGVRRSADSAVADPVIAALRGDGSTRSGLEMSQPAE*--------EKADALLAALDSMGAENALRRLEEVGSQFARETRAQMRELQDKL--------AMKQAQKQGRTTEGRRTLETLLTAEAF 363
            QKAQ   XXXXXX  VRR+ DSAVADPVI ALRG G TR  +   QP E         + A+  LA++DSMG +NAL+ LE++GS FA++TR ++R L+DK+        A++QAQKQ RT EGRRTL+T+LTA AF
Sbjct:  255 QKAQXXXXXXXXXXXVRRTEDSAVADPVIMALRGVGRTRPRVVTIQPTEPTAPVDWRQQSAETFLASMDSMGYDNALQHLEKIGSTFAKDTRKRLRGLEDKVSTAVSLERAIEQAQKQRRTNEGRRTLQTILTAAAF 391          
BLAST of mRNA_P-littoralis_Contig100.96.1 vs. uniprot
Match: A0A6H5LEY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEY9_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.810e-20
Identity = 64/137 (46.72%), Postives = 87/137 (63.50%), Query Frame = 1
Query:    1 QKAQQQAXXXXXXSGVRRSADSAVADPVIAALRGDGSTRSGLEMSQPAE*--------EKADALLAALDSMGAENALRRLEEVGSQFARETRAQMRELQDKL--------AMKQAQKQGRTTEGRRTLETLLTAEAF 363
            +KAQ  +       G RR+AD  VADPV+AALRG G TRS +   QPAE         +  +  LA++DSMG +NAL+ LEE+ S FA++ R ++REL+DK+        A++QA+KQ RT EG RTL+T+LTA A 
Sbjct:   94 EKAQGHSGGSSSGGGPRRNADREVADPVMAALRGGGRTRSRVVTIQPAEPTAPVDWRQQCTETFLASMDSMGYDNALKHLEEIVSTFAKDARKRLRELEDKVSTAVSLERAIEQARKQRRTKEGSRTLQTILTAAAI 230          
BLAST of mRNA_P-littoralis_Contig100.96.1 vs. uniprot
Match: D7FQY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQY8_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.090e-19
Identity = 58/101 (57.43%), Postives = 74/101 (73.27%), Query Frame = 1
Query:    1 QKAQQQAXXXXXXSGVRRSADSAVADPVIAALRGDGSTRSGLEMSQPAE*--------EKADALLAALDSMGAENALRRLEEVGSQFARETRAQMRELQDK 279
            QKAQQ++ XXXXX GVRR+ADSAVADPVI ALR  G TRS +   QPAE         +  +  LA++DSMG +NAL+ LEE+GS FA++TR ++REL+DK
Sbjct:   51 QKAQQRSGXXXXXGGVRRTADSAVADPVIMALRSGGRTRSRVVTIQPAEPTAPVDWRQQSTETFLASMDSMGYDNALKHLEEIGSTFAKDTRKRLRELEDK 151          
BLAST of mRNA_P-littoralis_Contig100.96.1 vs. uniprot
Match: A0A6H5J7C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7C0_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.600e-12
Identity = 48/106 (45.28%), Postives = 69/106 (65.09%), Query Frame = 1
Query:   94 LRGDGSTRSGLEMSQPAE*--------EKADALLAALDSMGAENALRRLEEVGSQFARETRAQMRELQDKL--------AMKQAQKQGRTTEGRRTLETLLTAEAF 363
            LRG G T+S +   QPAE         +  +  LA++DSMG +NAL+ LE++GS FA++TR ++R L+DK+        A++QAQKQ RT E  RTL+++LTA AF
Sbjct:    3 LRGVGRTQSRVVTIQPAEPTAPVDWRQQSTETFLASMDSMGYDNALKHLEKIGSTFAKDTRKRLRGLEDKVSTAVSLERAIEQAQKQRRTKERSRTLQSILTAAAF 108          
BLAST of mRNA_P-littoralis_Contig100.96.1 vs. uniprot
Match: A0A6H5JVZ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVZ1_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 2.210e-12
Identity = 44/98 (44.90%), Postives = 63/98 (64.29%), Query Frame = 1
Query:    1 QKAQQQAXXXXXXSGVRRSADSAVADPVIAALRGDGSTRSGLEMSQPAE*--------EKADALLAALDSMGAENALRRLEEVGSQFARETRAQMREL 270
            QKAQQ++       GV R+ADSAV +PVI ALRG G T S +   +PAE         +  +  LA++DSMG +NAL+ +E++GS FA++TR ++R L
Sbjct:   98 QKAQQRSGGGSSSGGVGRTADSAVTNPVIMALRGVGRTLSRVVTIEPAEPTTPVDWRQQSTETFLASMDSMGYDNALKHVEKIGSTFAKDTRKRLRGL 195          
BLAST of mRNA_P-littoralis_Contig100.96.1 vs. uniprot
Match: A0A6H5JDR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDR7_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 3.200e-10
Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 1
Query:  178 LDSMGAENALRRLEEVGSQFARETRAQMRELQDKL--------AMKQAQKQGRTTEGRRTLETLLTAEAF 363
            +DSMG +NAL+ LE +GS FA++TR ++R L+DK+        A++QAQKQ RT EG RTL+T+LTA AF
Sbjct:    1 MDSMGYDNALKHLERIGSTFAKDTRKRLRGLEDKVSRTASLERAIEQAQKQRRTKEGSRTLQTILTAAAF 70          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig100.96.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KCJ5_9PHAE7.410e-2752.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KI10_9PHAE2.130e-2652.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K847_9PHAE5.500e-2354.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LEY9_9PHAE1.810e-2046.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQY8_ECTSI1.090e-1957.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J7C0_9PHAE1.600e-1245.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVZ1_9PHAE2.210e-1244.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDR7_9PHAE3.200e-1054.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig100contigP-littoralis_Contig100:372734..373556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size365
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size177
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789341.0561285-CDS-P-littoralis_Contig100:372733..3728171680789341.0561285-CDS-P-littoralis_Contig100:372733..372817Pylaiella littoralis U1_48CDSP-littoralis_Contig100 372734..372817 -
1680789341.0670364-CDS-P-littoralis_Contig100:372841..3729341680789341.0670364-CDS-P-littoralis_Contig100:372841..372934Pylaiella littoralis U1_48CDSP-littoralis_Contig100 372842..372934 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789341.0803978-UTR-P-littoralis_Contig100:372934..3729671680789341.0803978-UTR-P-littoralis_Contig100:372934..372967Pylaiella littoralis U1_48UTRP-littoralis_Contig100 372935..372967 -
1680789341.0885727-UTR-P-littoralis_Contig100:373403..3735561680789341.0885727-UTR-P-littoralis_Contig100:373403..373556Pylaiella littoralis U1_48UTRP-littoralis_Contig100 373404..373556 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig100.96.1prot_P-littoralis_Contig100.96.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig100 372734..372934 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig100.96.1

>prot_P-littoralis_Contig100.96.1 ID=prot_P-littoralis_Contig100.96.1|Name=mRNA_P-littoralis_Contig100.96.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=59bp
MGAENALRRLEEVGSQFARETRAQMRELQDKLAMKQAQKQGRTTEGRRTL
ETLLTAEAF
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mRNA from alignment at P-littoralis_Contig100:372734..373556-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig100.96.1 ID=mRNA_P-littoralis_Contig100.96.1|Name=mRNA_P-littoralis_Contig100.96.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=823bp|location=Sequence derived from alignment at P-littoralis_Contig100:372734..373556- (Pylaiella littoralis U1_48)
CAGAAGGCACAGCAGCAGGCTGGAGGCGGCAGCAGCAGCAGCGGCGTCAG GAGGAGCGCAGATAGCGCTGTAGCCGACCCTGTAATCGCGGCTTTGAGGG GTGATGGCAGTACCAGATCTGGGTTGGAGATGAGCCAGCCAGCAGAGTAA GAGGTGAGACATTAAGCAAGCGCAGGATGCATGCCACCAACAATCAGAAG CGAATAAATAATTGTGCCGAAGTTTCGAGTCTCCCAACGAAAAAGTAGCA GACCCGTAGATAAGCCGAGCAATCAACAATCAAGATGCATAATTTCGCCG AGAGGTTTCAAATTCCACCGAGAAGAGACCGTGCATGCTAATTTTCACCG AGAAGATACCTGAGTGCACAAAGAGCGCAGTAACGGTTCGGGAAGTGCCC CTCTGTGCTGGTTCCGCAGCTTTTAATAGCCACTACCCTACGAAAACAAT GTCATGTACATGTATGTAAATGATGCACGCAATCGCTGCTCTGTCAGTCG CCTCCTATGCTTATGTCTCGGTGCACTTTGCCCCCACCCCCTTCGTCCGT CGCGTGTTCACACAGACGACCGTCGACTCGCACCTTCAGAAGGCGGACGC GCTCCTCGCTGCCTTGGACAGCATGGGCGCAGAGAACGCGCTGCGTCGCT TGGAAGAGGTCGGCTCGCAGTTCGCGAGGGAGACACGTGCTCAAATGCGA GAGTTGCAAGACAAGGCCCGTCTAGGAGTCGCACTTGAGCTGGCCATGAA GCAGGCGCAGAAGCAAGGGAGAACCACGGAGGGAAGACGAACGTTGGAAA CGCTTCTCACCGCCGAGGCCTTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig100:372734..373556-

>mRNA_P-littoralis_Contig100.96.1 ID=mRNA_P-littoralis_Contig100.96.1|Name=mRNA_P-littoralis_Contig100.96.1|organism=Pylaiella littoralis U1_48|type=CDS|length=177bp|location=Sequence derived from alignment at P-littoralis_Contig100:372734..373556- (Pylaiella littoralis U1_48)
ATGGGCGCAGAGAACGCGCTGCGTCGCTTGGAAGAGGTCGGCTCGCAGTT
CGCGAGGGAGACACGTGCTCAAATGCGAGAGTTGCAAGACAAGCTGGCCA
TGAAGCAGGCGCAGAAGCAAGGGAGAACCACGGAGGGAAGACGAACGTTG
GAAACGCTTCTCACCGCCGAGGCCTTT
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