mRNA_P-littoralis_Contig100.96.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig100.96.1 vs. uniprot
Match: A0A6H5KCJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ5_9PHAE) HSP 1 Score: 110 bits (276), Expect = 7.410e-27 Identity = 72/138 (52.17%), Postives = 93/138 (67.39%), Query Frame = 1
Query: 1 QKAQQQAXXXXXXSGVRRSADSAVADPVIAALRGDGSTRSGLEMSQPAE*EKA---------DALLAALDSMGAENALRRLEEVGSQFARETRAQMRELQDKLA--------MKQAQKQGRTTEGRRTLETLLTAEAF 363
QKAQQ++ SGVRR+ADSAVADPVI ALRG G TRS ++ S+PAE E A + LA++DSMG ENAL LE++GS FA++T ++REL+ K + ++QAQ Q RT EGR TL+T+LTA AF
Sbjct: 29 QKAQQRSGGSSRSSGVRRTADSAVADPVITALRGGGRTRSRVQTSEPAEQETAPVNWRQHATETFLASMDSMGYENALLHLEKIGSTFAKDTLVRLRELEAKASTAVSLERVIEQAQMQRRTIEGRHTLQTILTAAAF 166
BLAST of mRNA_P-littoralis_Contig100.96.1 vs. uniprot
Match: A0A6H5KI10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI10_9PHAE) HSP 1 Score: 112 bits (280), Expect = 2.130e-26 Identity = 72/138 (52.17%), Postives = 93/138 (67.39%), Query Frame = 1
Query: 1 QKAQQQAXXXXXXSGVRRSADSAVADPVIAALRGDGSTRSGLEMSQPAE*EK---------ADALLAALDSMGAENALRRLEEVGSQFARETRAQMRELQDKL--------AMKQAQKQGRTTEGRRTLETLLTAEAF 363
QKAQQ++ SGVRR+ADSAVADPVI ALRG G TRS ++ S+P E E + LA++DSMG ENALR L+++GS FA++T ++REL+ K A++QA KQ RTTEGR TL+T+LTA AF
Sbjct: 71 QKAQQRSGGSSRSSGVRRTADSAVADPVITALRGGGRTRSRVQTSEPVEQETEPVNWRQHATETFLASMDSMGHENALRHLKKIGSTFAKDTLVRLRELEAKASTAVSLERAIEQAPKQPRTTEGRHTLQTILTAAAF 208
BLAST of mRNA_P-littoralis_Contig100.96.1 vs. uniprot
Match: A0A6H5K847_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K847_9PHAE) HSP 1 Score: 102 bits (253), Expect = 5.500e-23 Identity = 74/137 (54.01%), Postives = 94/137 (68.61%), Query Frame = 1
Query: 1 QKAQQQAXXXXXXSGVRRSADSAVADPVIAALRGDGSTRSGLEMSQPAE*--------EKADALLAALDSMGAENALRRLEEVGSQFARETRAQMRELQDKL--------AMKQAQKQGRTTEGRRTLETLLTAEAF 363
QKAQ XXXXXX VRR+ DSAVADPVI ALRG G TR + QP E + A+ LA++DSMG +NAL+ LE++GS FA++TR ++R L+DK+ A++QAQKQ RT EGRRTL+T+LTA AF
Sbjct: 255 QKAQXXXXXXXXXXXVRRTEDSAVADPVIMALRGVGRTRPRVVTIQPTEPTAPVDWRQQSAETFLASMDSMGYDNALQHLEKIGSTFAKDTRKRLRGLEDKVSTAVSLERAIEQAQKQRRTNEGRRTLQTILTAAAF 391
BLAST of mRNA_P-littoralis_Contig100.96.1 vs. uniprot
Match: A0A6H5LEY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEY9_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 1.810e-20 Identity = 64/137 (46.72%), Postives = 87/137 (63.50%), Query Frame = 1
Query: 1 QKAQQQAXXXXXXSGVRRSADSAVADPVIAALRGDGSTRSGLEMSQPAE*--------EKADALLAALDSMGAENALRRLEEVGSQFARETRAQMRELQDKL--------AMKQAQKQGRTTEGRRTLETLLTAEAF 363
+KAQ + G RR+AD VADPV+AALRG G TRS + QPAE + + LA++DSMG +NAL+ LEE+ S FA++ R ++REL+DK+ A++QA+KQ RT EG RTL+T+LTA A
Sbjct: 94 EKAQGHSGGSSSGGGPRRNADREVADPVMAALRGGGRTRSRVVTIQPAEPTAPVDWRQQCTETFLASMDSMGYDNALKHLEEIVSTFAKDARKRLRELEDKVSTAVSLERAIEQARKQRRTKEGSRTLQTILTAAAI 230
BLAST of mRNA_P-littoralis_Contig100.96.1 vs. uniprot
Match: D7FQY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQY8_ECTSI) HSP 1 Score: 88.2 bits (217), Expect = 1.090e-19 Identity = 58/101 (57.43%), Postives = 74/101 (73.27%), Query Frame = 1
Query: 1 QKAQQQAXXXXXXSGVRRSADSAVADPVIAALRGDGSTRSGLEMSQPAE*--------EKADALLAALDSMGAENALRRLEEVGSQFARETRAQMRELQDK 279
QKAQQ++ XXXXX GVRR+ADSAVADPVI ALR G TRS + QPAE + + LA++DSMG +NAL+ LEE+GS FA++TR ++REL+DK
Sbjct: 51 QKAQQRSGXXXXXGGVRRTADSAVADPVIMALRSGGRTRSRVVTIQPAEPTAPVDWRQQSTETFLASMDSMGYDNALKHLEEIGSTFAKDTRKRLRELEDK 151
BLAST of mRNA_P-littoralis_Contig100.96.1 vs. uniprot
Match: A0A6H5J7C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7C0_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 1.600e-12 Identity = 48/106 (45.28%), Postives = 69/106 (65.09%), Query Frame = 1
Query: 94 LRGDGSTRSGLEMSQPAE*--------EKADALLAALDSMGAENALRRLEEVGSQFARETRAQMRELQDKL--------AMKQAQKQGRTTEGRRTLETLLTAEAF 363
LRG G T+S + QPAE + + LA++DSMG +NAL+ LE++GS FA++TR ++R L+DK+ A++QAQKQ RT E RTL+++LTA AF
Sbjct: 3 LRGVGRTQSRVVTIQPAEPTAPVDWRQQSTETFLASMDSMGYDNALKHLEKIGSTFAKDTRKRLRGLEDKVSTAVSLERAIEQAQKQRRTKERSRTLQSILTAAAF 108
BLAST of mRNA_P-littoralis_Contig100.96.1 vs. uniprot
Match: A0A6H5JVZ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVZ1_9PHAE) HSP 1 Score: 70.1 bits (170), Expect = 2.210e-12 Identity = 44/98 (44.90%), Postives = 63/98 (64.29%), Query Frame = 1
Query: 1 QKAQQQAXXXXXXSGVRRSADSAVADPVIAALRGDGSTRSGLEMSQPAE*--------EKADALLAALDSMGAENALRRLEEVGSQFARETRAQMREL 270
QKAQQ++ GV R+ADSAV +PVI ALRG G T S + +PAE + + LA++DSMG +NAL+ +E++GS FA++TR ++R L
Sbjct: 98 QKAQQRSGGGSSSGGVGRTADSAVTNPVIMALRGVGRTLSRVVTIEPAEPTTPVDWRQQSTETFLASMDSMGYDNALKHVEKIGSTFAKDTRKRLRGL 195
BLAST of mRNA_P-littoralis_Contig100.96.1 vs. uniprot
Match: A0A6H5JDR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDR7_9PHAE) HSP 1 Score: 65.1 bits (157), Expect = 3.200e-10 Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 1
Query: 178 LDSMGAENALRRLEEVGSQFARETRAQMRELQDKL--------AMKQAQKQGRTTEGRRTLETLLTAEAF 363
+DSMG +NAL+ LE +GS FA++TR ++R L+DK+ A++QAQKQ RT EG RTL+T+LTA AF
Sbjct: 1 MDSMGYDNALKHLERIGSTFAKDTRKRLRGLEDKVSRTASLERAIEQAQKQRRTKEGSRTLQTILTAAAF 70 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig100.96.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig100.96.1 >prot_P-littoralis_Contig100.96.1 ID=prot_P-littoralis_Contig100.96.1|Name=mRNA_P-littoralis_Contig100.96.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=59bp MGAENALRRLEEVGSQFARETRAQMRELQDKLAMKQAQKQGRTTEGRRTLback to top mRNA from alignment at P-littoralis_Contig100:372734..373556- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig100.96.1 ID=mRNA_P-littoralis_Contig100.96.1|Name=mRNA_P-littoralis_Contig100.96.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=823bp|location=Sequence derived from alignment at P-littoralis_Contig100:372734..373556- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig100:372734..373556- >mRNA_P-littoralis_Contig100.96.1 ID=mRNA_P-littoralis_Contig100.96.1|Name=mRNA_P-littoralis_Contig100.96.1|organism=Pylaiella littoralis U1_48|type=CDS|length=177bp|location=Sequence derived from alignment at P-littoralis_Contig100:372734..373556- (Pylaiella littoralis U1_48)back to top |