mRNA_P-littoralis_Contig100.92.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig100.92.1
Unique NamemRNA_P-littoralis_Contig100.92.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig100.92.1 vs. uniprot
Match: D8LG64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG64_ECTSI)

HSP 1 Score: 244 bits (623), Expect = 8.730e-70
Identity = 158/372 (42.47%), Postives = 197/372 (52.96%), Query Frame = 1
Query:  244 MLDDMVAGVVLAYLPSEELGISALISKAWLDSNSNESLWRPFLAAADPISTLGRARLAELAAKFSCKQVVTELSSRRCSFCREPTSGFFTLTCSRVCQSCFKSDSRVEMCSLSFAKSHYLLSDSQATALPTLYAHNAEETGVQIKKGGGMTITTCSAGKASALARWGTEEAFKREMDARKAKAEASYQTRVQAFNAAKRNENNKT------------STSASPSAGGPTSQSKSVNRHPNRPRILSLSDQTNFVGVNQQEYHTVRGEKYGYFRVVNDAFFDAGPTIVISSMTTW---------------------ACSDYVAGIKDNNMGNKYCGRECGERCA-------RGDRGEALIRAVQNAQEGTTIK 1239
            MLDD VAG +LAYLP  +LG S LISKAWL  N NESLWRPFL+  DPIS LG A+L+ELA +F+C+QVVT+LS R CS CREPTSGFFTLTCSRVC+SCF++D+R  MCSL                                                    RWG+EE F+ EM ARK KAEA+++ RV A+   ++    K+            STS SP A    S  +   R+P+ PRI  LS +TN+V  NQQE H VRGEKYG++R+VNDAFFDAGPTI IS  T+                       C    +    N+    +   E    C        R  RG   + A++ A++GTTIK
Sbjct:    1 MLDDAVAGDILAYLPCSDLGASNLISKAWLAPNKNESLWRPFLSTVDPISILGPAKLSELAEQFTCRQVVTQLSLRLCSLCREPTSGFFTLTCSRVCESCFETDARATMCSL----------------------------------------------------RWGSEEGFQAEMTARKVKAEAAHRARVAAYEITQQQSTAKSPSLSREGGGEEDSTSTSPPAE--PSPLEKPKRYPSTPRICRLSRETNYVASNQQEGHGVRGEKYGFYRIVNDAFFDAGPTIAISCATSSPSPHGPNTSTNTSNDDDLDENVCDVTCSACSSNSYARFHTMTESESYCPWDVQGYERERRGRVFVEALKTAKDGTTIK 318          
BLAST of mRNA_P-littoralis_Contig100.92.1 vs. uniprot
Match: D8LG65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG65_ECTSI)

HSP 1 Score: 246 bits (627), Expect = 3.020e-69
Identity = 167/410 (40.73%), Postives = 222/410 (54.15%), Query Frame = 1
Query:  244 MLDDMVAGVVLAYLPSEELGISALISKAWLDSNSNESLWRPFLAAADPISTLGRARLAELAAKFSCKQVVTELSSRRCSFCREPTSGFFTLTCSRVCQSCFKSDSRVEMCSLSFAKSHYLLSDSQATALPTLYAHNAEETGVQ-----IKKGGGMTITTCSAGKASALARWGTEEAFKREMDARKAKAEASYQTRVQAFNAAKRNENNKTSTSASPSAGG--------PTSQSKSVNRHPNRPRILSLSDQTNFVGVNQQEYHTVRGE--KYGYFRVVN-----------DAFFDAGPTIVISSMTTWACSDYVAGIKDNNMGNKYCGR-----ECGERCA-------RGDRGEALIRAVQNAQEGTTIKIANPVEVYEDIDVFRAVRLVGSSSAPLEMGEKSLALYGPS 1359
            MLDD VAG +LAYLP  +LG+S LISKAWL  N NESLWRPFL+  DPIS LG A+L+ELA +F+C+QVVT+LS    S CR+PTSGFFT+TCSRVC+ CF +D+RV+MCSLSFAK H+LLS SQA  LPTL+   A ETG+            +T TTCSAGK+SALARWG+EE F+ EM ARK KAEA+++ RV A+ AA+ +   +        +G         P S  +S N+ P RP +   +  T  +   +    T   E    G  R+              A    GP    ++       + V G   N+  +    R     E    C        R  RG A + A++ A+EGTTIK++                 +G+S   LE+ + +L +   S
Sbjct:    1 MLDDAVAGDILAYLPYSDLGVSNLISKAWLAPNENESLWRPFLSTVDPISILGPAKLSELAEQFTCRQVVTQLSLPLRSLCRDPTSGFFTVTCSRVCEPCFGTDTRVKMCSLSFAKHHFLLSSSQAARLPTLHVDKAYETGLPGVERFSHNKRSITRTTCSAGKSSALARWGSEEVFQAEMSARKGKAEAAHRARVAAYEAAQESMAGRAPPLPETPSGKKIRHRHHLPLSHLRSRNQSPTRPPLAFAALATKRISWERTSKSTTASEARSMGTIRLSTTPSSTLVRRLLSAPNPHGPDTSTNTSNNDDLDENVCGASCNSCSSNSYARFHTMTESESYCPWDVQGYERERRGRAFVEALKTAKEGTTIKVSXXXXXXXXXXXXXXXXXIGTSRGRLELQDGALFVKNAS 410          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig100.92.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LG64_ECTSI8.730e-7042.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LG65_ECTSI3.020e-6940.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig100contigP-littoralis_Contig100:355945..365317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LG65
Model size2714
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons9
Evalue1.28e-72
EggNOG OGs2D5Q8@1|root,2SZ98@2759|Eukaryota
Cds size1743
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig100.92.1prot_P-littoralis_Contig100.92.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig100 355987..364388 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789340.933336-UTR-P-littoralis_Contig100:355944..3559861680789340.933336-UTR-P-littoralis_Contig100:355944..355986Pylaiella littoralis U1_48UTRP-littoralis_Contig100 355945..355986 +
1680789341.030707-UTR-P-littoralis_Contig100:364388..3653171680789341.030707-UTR-P-littoralis_Contig100:364388..365317Pylaiella littoralis U1_48UTRP-littoralis_Contig100 364389..365317 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789340.9428906-CDS-P-littoralis_Contig100:355986..3562521680789340.9428906-CDS-P-littoralis_Contig100:355986..356252Pylaiella littoralis U1_48CDSP-littoralis_Contig100 355987..356252 +
1680789340.954559-CDS-P-littoralis_Contig100:358582..3587211680789340.954559-CDS-P-littoralis_Contig100:358582..358721Pylaiella littoralis U1_48CDSP-littoralis_Contig100 358583..358721 +
1680789340.962877-CDS-P-littoralis_Contig100:358985..3591191680789340.962877-CDS-P-littoralis_Contig100:358985..359119Pylaiella littoralis U1_48CDSP-littoralis_Contig100 358986..359119 +
1680789340.972666-CDS-P-littoralis_Contig100:360118..3602741680789340.972666-CDS-P-littoralis_Contig100:360118..360274Pylaiella littoralis U1_48CDSP-littoralis_Contig100 360119..360274 +
1680789340.9834435-CDS-P-littoralis_Contig100:361100..3614251680789340.9834435-CDS-P-littoralis_Contig100:361100..361425Pylaiella littoralis U1_48CDSP-littoralis_Contig100 361101..361425 +
1680789340.9939344-CDS-P-littoralis_Contig100:361720..3620021680789340.9939344-CDS-P-littoralis_Contig100:361720..362002Pylaiella littoralis U1_48CDSP-littoralis_Contig100 361721..362002 +
1680789341.0029407-CDS-P-littoralis_Contig100:363150..3632991680789341.0029407-CDS-P-littoralis_Contig100:363150..363299Pylaiella littoralis U1_48CDSP-littoralis_Contig100 363151..363299 +
1680789341.0117903-CDS-P-littoralis_Contig100:363887..3640641680789341.0117903-CDS-P-littoralis_Contig100:363887..364064Pylaiella littoralis U1_48CDSP-littoralis_Contig100 363888..364064 +
1680789341.0223894-CDS-P-littoralis_Contig100:364273..3643881680789341.0223894-CDS-P-littoralis_Contig100:364273..364388Pylaiella littoralis U1_48CDSP-littoralis_Contig100 364274..364388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig100.92.1

>prot_P-littoralis_Contig100.92.1 ID=prot_P-littoralis_Contig100.92.1|Name=mRNA_P-littoralis_Contig100.92.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=581bp
MPPIPTMPQRRVSMPLSSRNGVGGASAGASAASPASPSIPTNRRTGGLTK
RQQLLLMEATSHPRLFPMLDDMVAGVVLAYLPSEELGISALISKAWLDSN
SNESLWRPFLAAADPISTLGRARLAELAAKFSCKQVVTELSSRRCSFCRE
PTSGFFTLTCSRVCQSCFKSDSRVEMCSLSFAKSHYLLSDSQATALPTLY
AHNAEETGVQIKKGGGMTITTCSAGKASALARWGTEEAFKREMDARKAKA
EASYQTRVQAFNAAKRNENNKTSTSASPSAGGPTSQSKSVNRHPNRPRIL
SLSDQTNFVGVNQQEYHTVRGEKYGYFRVVNDAFFDAGPTIVISSMTTWA
CSDYVAGIKDNNMGNKYCGRECGERCARGDRGEALIRAVQNAQEGTTIKI
ANPVEVYEDIDVFRAVRLVGSSSAPLEMGEKSLALYGPSILRNLCVRRMG
QLQDEDSDDDMTFDDANIGPAVCVLGDMLLDGCTFGMCPFGAAVMLQAGR
LVAKANRFVESSVGLIVLPFSGSNQLETTVHLEGNHFKECYSWGVSKGPA
RCHLQDNDSILNTNTFQENEAGAIEDYRGD*
back to top

mRNA from alignment at P-littoralis_Contig100:355945..365317+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig100.92.1 ID=mRNA_P-littoralis_Contig100.92.1|Name=mRNA_P-littoralis_Contig100.92.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=9373bp|location=Sequence derived from alignment at P-littoralis_Contig100:355945..365317+ (Pylaiella littoralis U1_48)
ATCACCTCTCAACACCAACGCTCGTTGATCCCACACTGCATCATGCCCCC GATCCCAACGATGCCACAACGCCGTGTGTCCATGCCCCTTTCTTCAAGGA ACGGAGTAGGTGGTGCAAGCGCCGGTGCAAGCGCCGCTAGTCCCGCTAGC CCCTCCATCCCAACCAACCGGAGAACCGGCGGCCTCACCAAGCGCCAGCA GCTGTTGTTGATGGAAGCCACTTCTCACCCTAGACTGTTCCCGATGCTCG ACGATATGGTCGCAGGTGTTGTGTTGGCCTACCTTCCATCCGAGGAGCTA GGCATCAGGTGGGAGAGACAAACATGTCAGAGGTGGCATGTTGTGTTCTT CCGTACCTTCGTCACACACCGAACTGCAAATGCGACGTCCCCTACATATG TATGGTGATGTTGGGGTGCTGCTGTGTGCGCATGTGACAGGTGGGCACAA TTTCCTCTGTACTTCGAGTATGTCGCGAGTGAACCTACACATTCGACCCA ACAGGTGACGAGGGTAAGGGACGGTTGAACCCTTCTTGCGATAACAAGCT GAAGGGCATAACAGCAAGCACCGCAGAAGGTTGGTAGAGGAAAAACAAAA AAAACTCCTTTGTAACTTCTTTCCGTGTGACCCCGGCTGGTTCACCCACC TCATACCGAAAGGTGTAGACTGGACTGGAATACATGGGACGAAACACACA CATAGAAACACACGTTCGAAAAGGTGGCAAGCAATAAACCGTTCGTTATC GCTGCCGTCGGAGCTTCTCTTTACGTGAATATCACGTAGTCTACCTCCAA TCAATGGGACCAGCCGATTTTGTACCTTTTCAGACCCACAACCCCGGTTC CAAACCAGAACCATCCCAGTTCTCCCGAGACCCAGATAAAAATTAGAAGC TGTGAGCAACCAAGAGAAAATTGAAATGCGAGCACCTCACAGACATACAG TCAGGGGCCCTAACGGGGTATCACAGAATGCTGGTAACATCCCTGGACAG ACTGGAAGGGTACCTGGTAATCGCGATTCCGCCTCTTCTGGTCTCAAATA TCGCGGAATGACGGCTGTTTCGCCTATAGGCCTCCATTGCTCATATCCCA CTAAATCCAACATAATTCAGGAAAAGCGCATTTTTTTTGGCGCACTTTTT TCGACTGTAGCCCTCATCCTTGATTCTGTCAATCTGGGAAGGAGCACCGT AGCAGCAGTAGCGGTCCTACACCTCTTTAAATCATCATAATGATCGGGCT TGTTGCTGCTGCTTGGTGCTTGGTGCGAACCATTGCTGCTGTGGTCATGG TAGATGGTATGTTTACTAGGAGATTGACGGTTGCTGCGCGTTGTACAGAT TTAAAGTGTGGTGTGTGTCAAGCGAAAGAAAGGATATACCGTATATGACA CAAGATAACACACCCCGTGTTAAGCTTTTTGCATTCCGTATAGCTCCACG ACCAGGAGGGTGCCACTGCCGAAAAGGGTGGTTTTGGAAAGATCTCGTCG AGAGCTTTCGCATGACGGGCTGTTTGATGTTCGCACCCTCCTGGTTGTGG AGTAATACGGAATGCAAAAAACCTAACACGGGGTGTGTTATCTTGTGTCA TATACGGTACTTCGGCGTATGATAAACTATACATGCTGATGTACACAGGT GAGTAGTATATCGTACGATATGTTTGTTGTGTGAGAATTATTATTAGTTT TATTGCTGTGACGTTGCTCCTGCTGCGTACACATAAAATAATACTTCGAA GTATGACTATACGACGCCCATACAGCAAGCAGCAGTAGTAGCTGTGTAGG TGAACAAGCTTGCCTACGCGGAGTCCCTGGCGTGTTCAGATAAAGAAGCC CGAATGGACCAGGCTTCAAAAAAATAAAATAGAAAATGAACAATTTGAGT GAACAAAAAATCCCATCCCAAGTCACAGAAGGGTCAAAACAAGATTTTTT GGTCATCTTTTCCGCCCTTCAAAAATCAAGTCAAAATAGCTTATATTGAT AAGGCTCAGAAAGAGGCTGCCGTGCATTCTAGAGAAACATTCCAAGTCCT ATCAGGAAATAATTCCATGAAGCTACGTGTGCGTCGGCGGATTCAGATCT GCTGCTGTGGGTTAGATATCGAAGGTTTCAATAGTGGCCCAATACGTCCG CAAGCTGGATAGCCAACAAAAAACATCGTCCACTGCAGCCCTATCTTGCA CTGCGGTGCTCGCCGCCACATACCCCAACCTCCTGAACTACGGGTCAATA GCAGTGACTTATATGGCACTAGATGCCACCACAACCTCGGACGAACCGCC GTTCAGAAGGTTGGTGCCAATGGCGGCGAGTACAGCCGCGTCAAGCGTTT GGTGTCAGTCCGATAGAAAGTGGAATATTTCACTAGAATGTACGACAGAG CCAGTGAGAGGCTATCTCCTATGGGCTGTTTTAAGTTGATCAAAAAGAGC GACCTTTATATTTCATATCTAAATTCAGGTTTTTCCCTTAGGGTTTTTTT ACCGCTCTTGGCCGTCAAGCTTTAAGCCATGCCGAGTAATTGCAAACCCC GTTCAGCTGATACCGACAAGCCCAATCGGCGTATACAGCAACGTGCACTC CTTCAAACTGCTATTCCCCCGTTCGTTTTCGCAATCAGTGCCCTGATCAG CAAGGCCTGGCTGGATTCCAACTCAAACGAGTCCCTATGGCGTCCCTTCC TCGCCGCAGCTGATCCCATCTCAACTCTGGGAAGAGCCAGACTGGCGGAG CTTGCTGCCAAGTTCTCTTGCAAGCAGGTTTGGGACTCACATTAAAGAGC AACTCAACTGTATATTGCATACAACACCGGCAGTGTTGAGTGTGTCTATC GAGCGTATTCGGACGCCAAGCATAGCTGGTGTGTTACTGAACCAACACAT GAAAATCTTGTAGTTTTTAGACTACGTTTTGTATATGATGTGGAGACGCT AAACCTTCATCCACCAAACGAGTTTAACCAGCCTGCTGGCAGATTGTTGT TCAGCCGTTTCATCTGATCGTGTACCGTGCGTGCCTTGCAGGTAGTGACG GAACTCTCCTCGCGTCGCTGCTCTTTTTGTCGGGAGCCCACCAGCGGGTT TTTTACGCTTACGTGCTCGAGAGTGTGCCAATCCTGCTTCAAAAGCGACT CGCGAGTGGAAATGTGCAGCTTGAGGTGCGCTCAGTTCAATCGCGACAAC CGCATTTCGTTACTACCGCCCCTCAACCAGACCGCTGTCAGTTCTTCACC GAGATCACATCGTTTCCACACCACAATCACTAGCGCTGGTGTTTACCTTT CTCCTATGGAAAACTGTGTCTTTCTCCTACGCCAAGTCACCTTGCTGCCT ATTGTGCACACAAGCATTGTGGTCCCTCGCTTTGGGCACACAACCTGCGA AGCTGAAGGAACACCCTCTCCCGGAATGCCAGCAGATGCTTCAATATCAA CTTCTCTACATTAGTCCGACCATCTTTGTGATACATGGCTATTCGTCGAA GTGTGACCACATGTGCTTTCACTGGAGACGTTCATGCAGAGATATGAGAC AGTACCAGCGACCTTACGAACAAAACGTTTTTGACTTGGTCCTTGTGCCG ACAAGAGGCTATGCCTCTGCTCGCAAGGTTGATTAAGGACGTGAACACGG CCAACCGGCGCAGGCAGATGTAACCTAAGGTATCGTAAGGCGGGGTGGGG CAAGGCAGGGCAGGGAAAAATGAGCCTTCCATCTGCTATCGCAGGACTAC TCTCTGGAGTTCCATACGTTCGCGTAAGCGTGGTAGCTGTGGCCTAAGTG AGGCTGAGCAAAACATTCCAAGTCCGACGTGATGGCAGTTACTGCAAAAG TACAAACATGCGTGGTTTGTCGATTCTTACTTCGAGTAGTTGTGCACAAC CTGTATGTGATGTACTACTGCAAAACTTATGTCGCTCTTATCAATTGTAC ATAAATAACGTTTGTAGAGAACATAAGTCACCATATCACAACATATCCTA TTTCAATCAGAGGGTCTACAGGACTTTGCCAACAAGGATAGACTACAGTA CAGAGTTTTCCCGACCGCCCTTGAAAGTGATCACGACCAAATTATCGTCG GGAGCACGTCTTTCGCATTGCGCAAACTACCCTGCTTCCCGACTGCTGTT GCCACGATTTGTCGGGTCCACCAGCTTTGCGAAGAGCCACTACCTGCTGA GCGACTCCCAGGCAACCGCACTCCCTACCCTCTACGCTCACAATGCGGAG GAAACCGGGGTGCAAATCAAGAAGGGCGGTGGCATGACGATCACTACGTG CAGCGCTGGGAAGGCGTCGGCCCTGGCTAGGTATTAGTTGCCACTGCAGT GCAGGACAGCTCTGTTCGTCGTTGTCGTTCTCCGTTGATCACTTTTATTA ATATCTCTTCTCTTGTTCTCTCTCTCGCTCTCTCTCTCTCCTGTACCTTC TATGCCTGGATGATGATAAGATCGTGGGAAATACAACTCTTCGGTCAATG TTATGATAGTTTTAGAAAACACCGACAAACGTTTCATTGAATCACCCGCA TGTCGGTCTTTTTTTCGTCGCTCGCAGAAAAGGAGTTTGTGTCGTCGAGA ATTTGACCGCAAGGTTACATAGCTTCGTTTTAAATTTACACAAAAGGTGC TCCAGCGCTGCTTTTCGTTGTTCATCGCTCCCAGTTGACAAACCCGGCCC ATACTGCGAAAAAACTGTGTTCTCCCCTGATTTTTATTGCCCCGGTGACA AGCGGCTGAAGGTGATGTACTCTATTTCACTCACTCTTCTTCCGGAAGGA TTACACTCGCCACTCATGTTTCACTACTGAGAGTTGCTTCTGCGGCGTAC GAGCCGTTTATCTTTGTTTTTTGGGTCTTGACATAATTGACTGATACCAA AACGTTCCGCACAGCCATCTCGCGGGCGTCAAAAGGGAGCATGGGGCGGA CAAACCGGAAGCCTTTGAAAGTAACATGAGTCGGTACTGGACCATAACCA CAACATTTACTGGTCTGGCGTCACGAAACATGTCCCTGTTCCACTCGGCT GTCTCTGAAAACTGACTTTTTATCACAAGAGTTCTGGAACCCGCGGTCGT GTCGCTTGTACCACACCCTAACCCCTGCACACTATAAAATTACAATATGA AACGAGGTGGGGGACCGAGGAAGCCTTCAAACGAGAGATGGACGCGAGGA AGGCCAAGGCCGAGGCGTCTTACCAAACCCGTGTTCAGGCCTTCAATGCC GCAAAGAGAAACGAGAATAACAAAACGTCGACATCGGCATCACCATCCGC CGGCGGACCGACCTCACAAAGCAAAAGCGTCAACCGTCACCCAAACCGTC CTCGCATCCTCAGCCTCAGTGACCAGACAAACTTCGTTGGAGTGAACCAG CAAGAGTATCACACCGTGAGAGGAGAGAAGTACGGCTACTTTCGGGTAGT CAACGACGCCTTCTTCGACGCTGGCCCCACGGTACGGCCAGTTTGTGTTT GGTGGAGCTTTGAGTGAGACTCGAGCGAAACCCTTGTTTGCCACACGCAG CATACCGCTGATCTTCCCGCCGTATACCCCCATGCATCATTTCCCAGGGC AAGGCTGCACACTTTTCTTGGGTACATATGAAGGCCCGTGACAGCCCCGT GACACCCCGGTACAGGAGCTATTTTTCTGCACCGAGAAAAGGTTTCAAAT ATCGGCGTTGGGTACATTTGCGAAAACACAATTTGCGCGCCGTTTCCCAC GTGCGATTTCGGGGTGCCCCCGTCAGATCGTTATCAGCTCAATGACGACC TGGGCGTGCTCCGACTACGTCGCTGGGATAAAAGACAACAACATGGGCAA CAAGTACTGCGGACGAGAGTGCGGAGAGCGTTGCGCCAGGGGGGACCGCG GAGAAGCGCTCATCAGGGCAGTCCAGAACGCGCAGGAAGGGACGACCATC AAGATCGCCAATCCAGTCGAGGTCTATGAAGACATTGACGTCTTCCGAGC CGTGAGACTCGTCGGCTCATCCTCCGCCCCTCTCGAAATGGGGGAGAAAA GTCTCGCGGTAAGCAAGGAGAGTACTCTTGAACCTGCTGGAGACAATATG CTACCGAGTTGGCATATGTCTTTTCCACTATCGGTGATTGCTGAATGCTA ACCCCGGAGGAGGACAGCAGGCAAAGGCACTTCGTTAGATACGCATAGGC ATGAGATATCCTGTAGCACACACCACCAACCACGCCGTTTACCCCGGACC TTTTGTGGGCCCTTGGGTGCTTCGGGCCTAGCATCGCTCAATAAAATTGC CGGTACTTCGAACATGAACGTTATCGACGTGAAGCTTTTGCCCATTATGT GGGAGGGGTTGGACTAGGACCAAGGAGGTAGGCACAGGATGGTGCGTGTT ATAGTGGTCTTGGTGCGGATAAACTGTCTTGGGGATTGATAAGCCTTCAA CGCGGTGTGCACGCTTTATACATGCGCACACCGGTCAACCGGAGAATATC TGCGTGACGGCGCTGTCTGTCCTCATGACGCTGATTTTTTTTTCTCGAGT GACTCTCGGCTGTACCTTTCATTGTATCCTCGGATACTGTAGCGACCTGG ATGGCCGCGTGCAGTTTTCGCGGACACGACCCAAAGTAATATTGTGTTGG AGTATAAAACCTTCTGCATGACAAAAGCAACATATCTCACGTCTACGCCT TCCTTTCAGTTGTTTAAAAACTTTGTTCTGCAAACGCGTTAGTGCAGTGA TGTTATTCGATGATTGACACGCTGTCGTGATGAGAGTGCTTCGGTCAGGA CGGAGCATCATTGTTTTTAACGAATACTTGTATGCTGGTCCTGTGATAAT TGTGGTGTAATTGCATACTGTACCAGTACACCACGAGTTCGTCTGTTTGA TGAATACAATGCTATGTGGCACTTCTTCATGGCACGCCAGAGACGAAAGG CTCTAAAAGCCTGGAATACTCGTGATGCGCTACTCTTCGTCCCAAATATT ATCGATTCTGACGGCAGTTCCAAGACGGCCGAGTCGAATTACATATGCCA CGGGTACTTTTGGTGAAGCAAAACATGATGGCAAAGATATGGGGCCCCTA CGTTGAGGACTTTAATGATTTTTCAGAAGTGCTGGTTTGGAAACCTTTCC CTCTGTGTGCACAGACCATTTTCCGCGAAAACTCACATCCCATTGGCCTA TCTCAGCTTTACGGGCCTTCCATCTTGAGGAACCTGTGCGTGCGTCGCAT GGGGCAACTTCAGGATGAAGACTCTGATGATGACATGACTTTCGATGATG CAAACATTGGCCCGGCTGTGTGTGTTCTAGGCGACATGCTCCTCGACGGC TGCACGTGAGTTTTTGCCAAGCGTTCTCTGTGAAGAGAATCAGGGATACG GGATCCACAAACATGCCTCACATTGACTGTCGTGTGGCTACATCATGTTT AGAATATCGCGGTCTCAGTTTTGGGATATCGGACATCACTGAGCCTTGGT ACCCCTAGCTCGTTGCGACGCGGTAGGTACATTGTGCTTCTGCGAGGCTC TTACCGCCCAGTAGTGGGTAACGTCCCCCTCCCCGCTTGGCGCGGACCCA TCATCCCCGTGTTCGTGCACTAGCAGATCCTCACACATACACGTGCATTT GCACGTGCACCATAAAAGACTCTGCTCGTGGCCGGTGGACCCAGCGGTCG GGCTATGCTACATCGATTTTGCTGGCTACACGTTATGATAGTTGCTCTAC TCGGATGCCTACTGAAGAAACTCAATTGCGAACTGACAGCCTCGCCTCAT ACCCCCCTTGCCCCGCCCTGCCAAGCACGACCCACTCCCGACTTGGCTAC GCGAGCGTTGTTCCCCTCTTACAGACCATCCTCGCACAAATTGCAAAACG ACTGCACTTGTGCCTGTTTTCCGTATGCTCACAATATCAATAGGTTCGGC ATGTGCCCATTTGGTGCGGCCGTCATGCTTCAGGCCGGCCGACTTGTTGC GAAAGCCAACAGGTTCGTGGAGTCATCGGTGGGTCTCATCGTATTGCCCT TCTCAGGCTCTAACCAGCTGGAGACCACAGTCCATTTGGAGGGAAATCAC TTCAAGGAGTGCTATTCCTGGTGAGGACAGAAAATAAGTATTTTCTTCCA AACCATTCTTCGTTCCGCGATCTCAATAAGGAGGAATTGCTCTCGCCCTC TTGTCTGAACGCCAAAGTAGGAGAAGTCGCTTTGAGGCCAAAGTAGGAGA AGTCCCTTTGACCGCTTGCCTTCCGTACGTCTTGTATCCAACATTTTTGC CTTTGACTCTTCTGTATCTCGATAAGCAGGGGGGTTTCGAAGGGCCCGGC CCGTTGCCACCTACAAGACAACGACTCCATCCTGAACACCAACACATTCC AGGAAAACGAGGCCGGTGCGATTGAGGACTATCGAGGAGACTGAAGACCA TCCGACGCAGACAGTGACAAGGGCATACATACGCTTCTAGAGCCGGTAGT CAAACGTAGGATTGTAGACATGCATCACACAGTTTGTCGCACAATTTCTG CGAGACAAATATATTAGTAGCCTAGACCGACGGGGCAGGACCGGCGTGTG CAGGGCGTCGTGGTGATGGAAACACAATTTGCCCGAGCACGTGCGGGACG CGACTCAAGAAGGGTTTGCGCTTGATCACGGCGCATGATGACCATTTGGA TTTATGTTCACGTAGAAAAACATCTAGAAAACTTCGATGAGGAAAAAGCC TTATCGGTTCATGTCAAGCTGAGAAAAGTTATCTCGGACGTGCGTGTAAG AGTAACAAACAGCATTGTGCACATGGTTTTTGGGTTGACCTTAGTCGTGT ACTGCACAGGTGCAAGAGAAAACACCTCACGCAGCGAGCTCTGTCAGCCG CCATGTCTTTTTTCGAATGTTCGTATCGTCAAGCAGAATTCTATACGTCG TGGTTGCACAAGTCGCTACAGCCTCGCCGTGCGTTGAACAGGGGAAGAAT ATCGAGTCGCGAGCAAATTATCGGGCTAGCTTAGGCTTTATGCGGGGTGT AGTCACCGTCACAGGAACCCTGTCGAAAATCGTCTGGTTGGCTGAGCCAT CGGCAGGTGGGGTATTACTCAACATTGTTTTCCGACAAGGTGATGATCAC GGGTTGTTAGGCATGAAAGGATTGGTGGCGGTATGCTTTACCATAGCCTT CTAAGTGACCCCGGTCATGAGCACGGTCGTGTCACGTTCATGTACCTGAT ACACGATAGGCTTTGGCTCGGATATGGGAAGCAACGACTGCCCTGAACCT GAATCAAAACATCTTGGCCCTTCCCAGGCATTATTGAGAAATACTTTGAA AGGGCATCATAACTCCCTTTCGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig100:355945..365317+

>mRNA_P-littoralis_Contig100.92.1 ID=mRNA_P-littoralis_Contig100.92.1|Name=mRNA_P-littoralis_Contig100.92.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1743bp|location=Sequence derived from alignment at P-littoralis_Contig100:355945..365317+ (Pylaiella littoralis U1_48)
ATGCCCCCGATCCCAACGATGCCACAACGCCGTGTGTCCATGCCCCTTTC
TTCAAGGAACGGAGTAGGTGGTGCAAGCGCCGGTGCAAGCGCCGCTAGTC
CCGCTAGCCCCTCCATCCCAACCAACCGGAGAACCGGCGGCCTCACCAAG
CGCCAGCAGCTGTTGTTGATGGAAGCCACTTCTCACCCTAGACTGTTCCC
GATGCTCGACGATATGGTCGCAGGTGTTGTGTTGGCCTACCTTCCATCCG
AGGAGCTAGGCATCAGTGCCCTGATCAGCAAGGCCTGGCTGGATTCCAAC
TCAAACGAGTCCCTATGGCGTCCCTTCCTCGCCGCAGCTGATCCCATCTC
AACTCTGGGAAGAGCCAGACTGGCGGAGCTTGCTGCCAAGTTCTCTTGCA
AGCAGGTAGTGACGGAACTCTCCTCGCGTCGCTGCTCTTTTTGTCGGGAG
CCCACCAGCGGGTTTTTTACGCTTACGTGCTCGAGAGTGTGCCAATCCTG
CTTCAAAAGCGACTCGCGAGTGGAAATGTGCAGCTTGAGCTTTGCGAAGA
GCCACTACCTGCTGAGCGACTCCCAGGCAACCGCACTCCCTACCCTCTAC
GCTCACAATGCGGAGGAAACCGGGGTGCAAATCAAGAAGGGCGGTGGCAT
GACGATCACTACGTGCAGCGCTGGGAAGGCGTCGGCCCTGGCTAGGTGGG
GGACCGAGGAAGCCTTCAAACGAGAGATGGACGCGAGGAAGGCCAAGGCC
GAGGCGTCTTACCAAACCCGTGTTCAGGCCTTCAATGCCGCAAAGAGAAA
CGAGAATAACAAAACGTCGACATCGGCATCACCATCCGCCGGCGGACCGA
CCTCACAAAGCAAAAGCGTCAACCGTCACCCAAACCGTCCTCGCATCCTC
AGCCTCAGTGACCAGACAAACTTCGTTGGAGTGAACCAGCAAGAGTATCA
CACCGTGAGAGGAGAGAAGTACGGCTACTTTCGGGTAGTCAACGACGCCT
TCTTCGACGCTGGCCCCACGATCGTTATCAGCTCAATGACGACCTGGGCG
TGCTCCGACTACGTCGCTGGGATAAAAGACAACAACATGGGCAACAAGTA
CTGCGGACGAGAGTGCGGAGAGCGTTGCGCCAGGGGGGACCGCGGAGAAG
CGCTCATCAGGGCAGTCCAGAACGCGCAGGAAGGGACGACCATCAAGATC
GCCAATCCAGTCGAGGTCTATGAAGACATTGACGTCTTCCGAGCCGTGAG
ACTCGTCGGCTCATCCTCCGCCCCTCTCGAAATGGGGGAGAAAAGTCTCG
CGCTTTACGGGCCTTCCATCTTGAGGAACCTGTGCGTGCGTCGCATGGGG
CAACTTCAGGATGAAGACTCTGATGATGACATGACTTTCGATGATGCAAA
CATTGGCCCGGCTGTGTGTGTTCTAGGCGACATGCTCCTCGACGGCTGCA
CGTTCGGCATGTGCCCATTTGGTGCGGCCGTCATGCTTCAGGCCGGCCGA
CTTGTTGCGAAAGCCAACAGGTTCGTGGAGTCATCGGTGGGTCTCATCGT
ATTGCCCTTCTCAGGCTCTAACCAGCTGGAGACCACAGTCCATTTGGAGG
GAAATCACTTCAAGGAGTGCTATTCCTGGGGGGTTTCGAAGGGCCCGGCC
CGTTGCCACCTACAAGACAACGACTCCATCCTGAACACCAACACATTCCA
GGAAAACGAGGCCGGTGCGATTGAGGACTATCGAGGAGACTGA
back to top