mRNA_P-littoralis_Contig100.80.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig100.80.1
Unique NamemRNA_P-littoralis_Contig100.80.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig100.80.1 vs. uniprot
Match: D7FJX2_ECTSI (Glutaminyl-tRNA Synthetase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJX2_ECTSI)

HSP 1 Score: 1165 bits (3015), Expect = 0.000e+0
Identity = 572/642 (89.10%), Postives = 606/642 (94.39%), Query Frame = 1 
Query:    1 QIRTRFPPEPNGYLHIGHAKSMHMNFHLAFEKLSLDTQHIPEDMRETIFRYDDTNPEAESQEYIDSIREDLEWMGWKPAQTTYSSDSFQLLYELAIKLIEGGKAYVCHQTKDDIFKCREIAKANAANLNTNAGDPCSPWRNRPIQENLDIFEKMRTGQLDEGSATLRLKMDMTSPNPNMWDQVAYRIRYIPHPHAGDKWCVYPTYDYTHCLVDSLEDIDYSICTLEFETRRESYFWLLEALELYRPKVYEFARLNITRTLLSKRKLLKLVKGRKVRGWDDPRMPTIKGLRRRGYTAEILNKFCEDIGVTRNDNLIEVEKLEHWARSGLNVSSRRVMGALSPVKVTLTNLEETREVEALDVPFAPEAGSHKIRLTKTLYIDASDFRREDSKDYFGLAPGKMVGLKYCSATMRCDRVVDGEGGASAPPVELICSLGELSQESSA----APAGDVGADAATKRPGGRPKGNISWVSAEEAVRAEVRLYSHLFTVDSPDDRWEEQINPESEVVVSGAVVDPSVLEKEHSAGTPLQLERIGFFVVDKDSTPELLVLNRTVTLKEATGKSAVPKDKSRKELQARQAAEKEARKRVPPQEMFVAMTDLYSAFDDQGVPTTDQAGEPLSKSAIKKLKKEWDKQKKLYEKS 1914
            +IRTRFPPEPNGYLHIGHAKSMHMNFHLAFEK     + +P D RET+FRYDDTNPEAES+EYIDSIREDLEWMGWKP QTTYSSDSFQLLY++AIKLIEGGKAYVCHQTKDDIFKCREIAK NAA+ N NAGDPCSPWRNRP+QE+LD+FEKMRTGQ+ EGSATLRLKMDMTSPNPNMWDQVAYR+RYIPHPHAGDKWCVYPTYDYTHCLVDSLEDIDYSICTLEFETRRESY+WLLEAL+LYRPKVYEFARLNITRT+LSKRKLLKLVKG KVRGWDDPRMPTIKGLRRRGYTAEILN+FCEDIGVTRNDNLIEVEKLEHWARSGLNVSSRRVMGALSP+KVTL+NLEE REVEALDVPFAPE GSHKIRLTKTL+IDASDFRREDSKDYFGLAPGKMVGLKYCSATMRCD VVDGEGG  APP ELICSLG+LSQE S+    APAGD G     KRP  RPKGNISWVSAEEAVRAEVRLY+HLFTVDSPDD+WEEQINPESE V++GAV+DPSVLEKEHS GTPLQLERIGFFVVDKDSTPELLVLNRTVTLKEATGKS VPKDKSRKE+QARQAAEKEARKRVPPQEMF++MTDLYSAFDDQGVPTTD++GEPLSKSAIKKLKKEW+KQKKLYEK+
Sbjct:   21 KIRTRFPPEPNGYLHIGHAKSMHMNFHLAFEK-----EAVPRDRRETVFRYDDTNPEAESKEYIDSIREDLEWMGWKPVQTTYSSDSFQLLYDMAIKLIEGGKAYVCHQTKDDIFKCREIAKVNAADPNANAGDPCSPWRNRPVQESLDLFEKMRTGQMGEGSATLRLKMDMTSPNPNMWDQVAYRVRYIPHPHAGDKWCVYPTYDYTHCLVDSLEDIDYSICTLEFETRRESYYWLLEALDLYRPKVYEFARLNITRTVLSKRKLLKLVKGGKVRGWDDPRMPTIKGLRRRGYTAEILNRFCEDIGVTRNDNLIEVEKLEHWARSGLNVSSRRVMGALSPIKVTLSNLEEAREVEALDVPFAPERGSHKIRLTKTLFIDASDFRREDSKDYFGLAPGKMVGLKYCSATMRCDEVVDGEGGKDAPPAELICSLGDLSQEPSSEAASAPAGDAGGGETAKRPPVRPKGNISWVSAEEAVRAEVRLYNHLFTVDSPDDKWEEQINPESECVMTGAVIDPSVLEKEHSVGTPLQLERIGFFVVDKDSTPELLVLNRTVTLKEATGKSTVPKDKSRKEIQARQAAEKEARKRVPPQEMFLSMTDLYSAFDDQGVPTTDKSGEPLSKSAIKKLKKEWEKQKKLYEKT 657
[Close]
BLAST of mRNA_P-littoralis_Contig100.80.1 vs. uniprot
Match: A0A835Z3U2_9STRA (Glutaminyl-tRNA synthetase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3U2_9STRA)

HSP 1 Score: 792 bits (2046), Expect = 1.390e-280
Identity = 406/652 (62.27%), Postives = 493/652 (75.61%), Query Frame = 1 
Query:    1 QIRTRFPPEPNGYLHIGHAKSMHMNFHLAFEKLSLDTQHIPEDMRETIFRYDDTNPEAESQEYIDSIREDLEWMGWKPAQTTYSSDSFQLLYELAIKLIEGGKAYVCHQTKDDIFKCREIAKANAANLNTNAGDPCSPWRNRPIQENLDIFEKMRTGQLDEGSATLRLKMDMTSPNPNMWDQVAYRIRYIPHPHAGDKWCVYPTYDYTHCLVDSLEDIDYSICTLEFETRRESYFWLLEALELYRPKVYEFARLNITRTLLSKRKLLKLVKGRKVRGWDDPRMPTIKGLRRRGYTAEILNKFCEDIGVTRNDNLIEVEKLEHWARSGLNVSSRRVMGALSPVKVTLTNLEETREVEALDVPFAPEAGSHKIRLTKTLYIDASDFRREDSKDYFGLAPGKMVGLKYCSATM-RCDRVVD-GEGGASAPPVELICSLGELSQESSAAPAGDVGADAATKRPGGRPKGNISWVSAEEAVRAEVRLYSHLFTVDSPDDRWEEQINPESEVVVSGAVVDPSVLEKEHSAGTPLQLERIGFFVVDKDSTPEL----LVLNRTVTLKEATGKS--------AVPKDKSRKELQARQAAEKEARKRVPPQEMFV--AMTDLYSAFDDQGVPTTDQAGEPLSKSAIKKLKKEWDKQKKLYE 1908
            ++RTRFPPEPNGYLHIGHAKSM+MNF  AF+KL      + EDMR+TIFRYDDTNPEAESQEYIDS+RED+ W+GW P +TT+SSD+FQ LY+ A++LI+ GKAYVCHQTKDDI +CR+IAKA  A+ NT  GDP SPWR RP +ENL +F  MR G+L+E +ATLRLKMDMTS NPNMWDQ+AYRIRY PHPHAGD WC+YPTYDYTHC+VDS+E IDYSICTLEFE+RRESY+WLLEAL +YRPKVYEFARLNIT T+LSKR+LLKLVK   VRGWDDPRMPTIK LRRRGYTAE LN FC DIGV+RN+ +IEVE+L +WAR+ +N ++ R M  L P+ VT+TNL E  ++ A  +P APE GS +I L  ++YID++DFR +DSKDYFGLAPGK+VGLKY    + RCD+VV  GE G      ELICSL ++++++                   RPKG +SWV  + AV+AE+RLY+HLFTV  PD  WE+Q+N ESEVV+  AVVD SVL    +AG+P Q ER+GFFVVD+DS  E     +V NRTVTL++  GK+        A P  +SRKE Q  Q A KEA K++PPQ+MF      D YSA+D  GVPT    GEP+SKSA KKLKKEW+K KK+Y+
Sbjct:   11 KVRTRFPPEPNGYLHIGHAKSMNMNFKGAFDKLG-----VAEDMRQTIFRYDDTNPEAESQEYIDSLREDVSWLGWTPVETTFSSDNFQQLYDYAVQLIKEGKAYVCHQTKDDISRCRDIAKAKIADPNT-PGDPNSPWRERPREENLRLFGDMRKGKLEENAATLRLKMDMTSSNPNMWDQIAYRIRYTPHPHAGDNWCIYPTYDYTHCIVDSIEHIDYSICTLEFESRRESYYWLLEALNIYRPKVYEFARLNITYTVLSKRRLLKLVKQGLVRGWDDPRMPTIKSLRRRGYTAEALNAFCTDIGVSRNETIIEVERLTYWARTLMNDTAPRAMACLEPILVTITNLPEVLKLSAPLLPMAPEKGSREILLGSSIYIDSTDFREQDSKDYFGLAPGKLVGLKYAGLRLLRCDKVVKTGEDGTGTVK-ELICSLVDIAEDAK------------------RPKGTLSWVPFDSAVKAEIRLYNHLFTVPEPDANWEQQLNLESEVVMPNAVVDSSVLGC--AAGSPFQFERLGFFVVDRDSGSEAVGGKMVFNRTVTLRDGAGKAEAAAASGAAAPATRSRKEEQMAQLAAKEAMKKIPPQDMFRNGPDADKYSAYDADGVPTHAADGEPISKSAFKKLKKEWEKHKKVYQ 635
[Close]
BLAST of mRNA_P-littoralis_Contig100.80.1 vs. uniprot
Match: A0A6H5JZH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZH1_9PHAE)

HSP 1 Score: 785 bits (2027), Expect = 1.800e-275
Identity = 441/763 (57.80%), Postives = 469/763 (61.47%), Query Frame = 1 
Query:  430 IQENLDIFEKMRTGQLDEGSATLRLKMDMTSPNPNMWDQVAYRIRYIPHPHAGDKWCVYPTYDYTHCLVD----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SLEDIDYSICTLEFETRRESYFWLLEALELYRPKVYEFARLNITRTLLSKRKLLKLVKGRKVRGWDDPRMPTIKGLRRRGYTAEILNKFCEDIGVTRNDNLIEVEKLEHWARSGLNVSSRRVMGALSPVKVTLTNLEETREVEALDVPFAPEAGSHKIRLTKTLYIDASDFRREDSKDYFGLAPGKMVGLKYCSATMRCDRVVDGEGGASAPPVELICSLGELSQESSAAPAGDVGADAATKRPGGRPKGNISWVSAEEAVRAEVRLYSHLFTVDSPDDRWEEQINPESEVVVSGAVVDPSVLEKEHSAGTPLQLERIGFFVVDKDSTPELLVLNRTVTLKEATGKSAVPKDKSRKELQARQAAEKEARKRVPPQEMFVAMTDLYSAFDDQGVPTTDQAGEPLSKSAIKKLKKEWDKQKKLYEKS 1914
             QE+LD+FEKMRTGQ+DEG+ATLRLKMDMTSPNPNMWDQVAYR+RYIPHPH GDKWCVYPTYDYTHCLVD                                                                                                                                                                                                                                                                            SLEDIDYSICTLEFETRRESY+WLLEAL+LYRPKVYEFARLNITRT+LSKRKLLKLVKG KVRGWDDPRMPTIKGLRRRGYTAEILNKFCEDIGVTRN   + VEKLEHWARSGLNVSSRRVMGALSP+KVTL+NLEE REVEALDVPFAPE GSHKIRLTKTL+IDASDFRREDSKDYFGLAPGKMVGLKYCSATMRCD VVDGEGG  APP ELICSLG+LSQE S+APAG+ G      RP  RPKGNISWVSAEEAVRAEVRLY+HLFTVDSPDD+WEEQ+NPESE V++GAV+DPSVLEKEHS GTPLQLERIGFFVVDKDSTPELLVLNRTVTLKEATGKS VPKDKSRKE+QARQAAEKEARKRVPPQEMF++MTDLYSAFDDQGVPTTD+AGEPLSKS+IKKLKKEW+KQKKLYEK+
Sbjct:   16 FQESLDLFEKMRTGQMDEGAATLRLKMDMTSPNPNMWDQVAYRVRYIPHPHVGDKWCVYPTYDYTHCLVDRVTSAGAPLSAAGGAMVEGATFSTSLDLKRAFERCMISKPRQCGRDKRRRCPVRARGCKQNDGTWKVTEVVLDRVACIGQAGNEKQRVNRRCAEEEAMALVRSNHSITCPHESGCTRRGGRPRRVTSAGAPLSAAGGAMVEGATFSTSLDLKRAFERCMISKPRQCGRDKRRRCPVRARGCKQNDGTWKVTEVVLDRVACIGQAGNEKQRVNRRCAEEEAMALVRSNHSITCPHESGCTRRGGVPMVDKLLPCSSLLLETCVYVPILNSLEDIDYSICTLEFETRRESYYWLLEALDLYRPKVYEFARLNITRTVLSKRKLLKLVKGGKVRGWDDPRMPTIKGLRRRGYTAEILNKFCEDIGVTRNRPGL-VEKLEHWARSGLNVSSRRVMGALSPIKVTLSNLEEAREVEALDVPFAPERGSHKIRLTKTLFIDASDFRREDSKDYFGLAPGKMVGLKYCSATMRCDEVVDGEGGKDAPPAELICSLGDLSQEPSSAPAGEAGGGETVNRPPVRPKGNISWVSAEEAVRAEVRLYNHLFTVDSPDDKWEEQLNPESECVMTGAVIDPSVLEKEHSVGTPLQLERIGFFVVDKDSTPELLVLNRTVTLKEATGKSTVPKDKSRKEIQARQAAEKEARKRVPPQEMFLSMTDLYSAFDDQGVPTTDKAGEPLSKSSIKKLKKEWEKQKKLYEKT 777
[Close]
BLAST of mRNA_P-littoralis_Contig100.80.1 vs. uniprot
Match: W7TED8_9STRA (Glutamine-trna ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TED8_9STRA)

HSP 1 Score: 763 bits (1969), Expect = 1.580e-268
Identity = 399/651 (61.29%), Postives = 483/651 (74.19%), Query Frame = 1 
Query:    1 QIRTRFPPEPNGYLHIGHAKSMHMNFHLAFEKLSLDTQHIPEDMRETIFRYDDTNPEAESQEYIDSIREDLEWMGWKPAQTTYSSDSFQLLYELAIKLIEGGKAYVCHQTKDDIFKCREIAKANAANLNTNAGDPCSPWRNRPIQENLDIFEKMRTGQLDEGSATLRLKMDMTSPNPNMWDQVAYRIRYIPHPHAGDKWCVYPTYDYTHCLVDSLEDIDYSICTLEFETRRESYFWLLEALELYRPKVYEFARLNITRTLLSKRKLLKLVKGRKVRGWDDPRMPTIKGLRRRGYTAEILNKFCEDIGVTRNDNLIEVEKLEHWARSGLNVSSRRVMGALSPVKVTLTNLEETREVEALDVPFAPEAGSHKIRLTKTLYIDASDFRREDSKDYFGLAPGKMVGLKYCSATMRCDRVVDGEGGASAPPVELICSLGELSQESSAAPAGDVGADAATKRPGGRPKGNISWVSA--EEAVRAEVRLYSHLFTVDSPD-DRWEEQINPESEVVVSGAVVDPSVLEKEH---SAGTPLQLERIGFFVVDKDSTPELLVLNRTVTLKEATGKSAVP-----KDKSRKELQARQAAEKEARKRVPPQEMFVAMTDLYSAFDDQGVPTTDQAGEPLSKSAIKKLKKEWDKQKKLYEKSQE 1920
            ++RTRFPPEPNGYLHIGHAKSMHMNFHLAFEKL      +PEDMRET+FRYDDTNPEAESQEYIDS+RED+EW+GW PAQTT++SD F  LY+LA++LI   KAYVCHQT + I K R IAK  A N +   GDP SPWR+RPI+E+L +FE MR G+  E  ATLR+KMDM+SPN NM+DQVAYRI++IPHPHAGD W VYPTYD+THC++DSLE IDYSICTLEFETRRESY+W+LEAL+LYRPKVYEF+RLNIT T+LSKRKLLKLVK + V GWDDPRMPTIKGLRRRGYTA+ILN FC+DIGVTRN+N+I+ E+L+HWAR+ LN +++R MG   P+ VT++NLEE  ++E+ D PFAPE GSH I LT  +YIDASDFR +DSKDYFGLAPGK   LKY       + + +  G      VEL                  V AD     P  +PKG I+WVSA  +  V AE RLY+HLFTV+ P  D WE ++NP S  V +  ++D SVL       S  T  QLER+G+F VD D+T   LVLNR VTLKE++ K  V      K +SRKE QARQ  EKEARK + P++MF A TD YSAFD+ G+PT D  G  LSKS +KKLKKEW+KQK+L++ +++
Sbjct:   40 KVRTRFPPEPNGYLHIGHAKSMHMNFHLAFEKLG-----VPEDMRETVFRYDDTNPEAESQEYIDSLREDVEWLGWTPAQTTFTSDYFDQLYDLAVRLIRADKAYVCHQTGEQISKSRSIAKEKAVNPHFE-GDPNSPWRDRPIEESLRLFEDMRLGKFKENEATLRMKMDMSSPNFNMYDQVAYRIKFIPHPHAGDTWVVYPTYDFTHCIIDSLEHIDYSICTLEFETRRESYYWVLEALDLYRPKVYEFSRLNITYTVLSKRKLLKLVKAKWVAGWDDPRMPTIKGLRRRGYTADILNAFCKDIGVTRNENIIQYERLQHWARTILNETAKRAMGVQDPILVTISNLEEPVKLESPDFPFAPERGSHSIVLTPKIYIDASDFREDDSKDYFGLAPGKSAILKYAFPVCVNEVLYNDTGDV----VEL-----------------KVTADKDGSSP--KPKGAITWVSAVPDNVVSAEFRLYNHLFTVECPGVDTWEAELNPLSLEVKAQGLIDTSVLTVNGQLPSVFTTFQLERVGYFTVDPDTTSAKLVLNRVVTLKESSVKKDVSTGADGKGRSRKEEQARQLLEKEARKNLDPKDMFQAETDKYSAFDEDGIPTKDVEGILLSKSLVKKLKKEWEKQKRLFDSNRK 661
[Close]
BLAST of mRNA_P-littoralis_Contig100.80.1 vs. uniprot
Match: A0A7S2GDR5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GDR5_9STRA)

HSP 1 Score: 647 bits (1670), Expect = 9.650e-223
Identity = 352/674 (52.23%), Postives = 441/674 (65.43%), Query Frame = 1 
Query:    4 IRTRFPPEPNGYLHIGHAKSMHMNFHLAFEKLSLDTQHIPEDMRETIFRYDDTNPEAESQEYIDSIREDLEWMGWKPAQTTYSSDSFQLLYELAIKLIEGGKAYVCHQTKDDIFKCREIAKANAANLNTN---------AGDPCSPWRNRPIQENLDIFEKMRTGQLDEGSATLRLKMDMTSPNPNMWDQVAYRIRYIPHPHAGDKWCVYPTYDYTHCLVDSLEDIDYSICTLEFETRRESYFWLLEALELYRPKVYEFARLNITRTLLSKRKLLKLVKGRKVRGWDDPRMPTIKGLRRRGYTAEILNKFCEDIGVTRNDNLIEVEKLEHWARSGLNVSSRRVMGALSPVKVTLTNLEETREVEALDVPFAPE---AGSHKIRLTKTLYIDASDFRREDSKDYFGLAPGKMVGLKYCSATMRCDRV-VDGEGGASAPPVELICSLGELSQESSAAPAGDVGADAATKRPGGRPKGNISWVSAEEAVRAEVRLYSHLFTVDSPDDR-WEEQINPESEVVVSGAVVDPSVLEKEH-------SAGTPLQLERIGFFVVDKDSTPEL-LVLNRTVTLKEATGKSAVP-----------KDKSRKELQARQAAEKEARKRVPPQEMFVA--MTDLYSAFDDQGVPTTDQAGEPLSKSAIKKLKKEWDKQKKLYEKSQE 1920
            +RTRFPPEPNGYLHIGHAKSM+MNF LAF+KL ++        RET+FRYDDTNPEAE  EYIDSI+ED+ WMGWKP +TTY+SD F  LYELA +LI  G  YVC Q  +DI +CRE A+  A   +           +G+P SPWR+  +  N++ F  M+ G+ DEG   LR+KMDMTS N NM+DQVAYRI++  HPH G+KW +YPTYD+THC+ DSLE +D+SICTLEFE+RRESY+WLL  L +++P VYE +RLNI   LLSKRKLLKL++ +   GWDDPRMPTIKGLRRRGYTA  LNKFC+ IGVTRN+NLIE   L+   R  ++ S+RRVM  L P+KV LTN +     + L VP  P+   +  H + LT TLYID +DFR  DSKDYFGLAPGK +GLKY +  + CD V V  E G      ELIC+   L  +                  G RP+G + WV +   ++ E RLY HLF V  P D  WE Q+N ESEV++SGA +DPS+L  E        S GT  Q ERIG FVVD D++PE  LV+NRT  LKE+  K  V            K++ RKE Q +    K AR  + P+++F        + AFDD GVPT D A  PL+KSA+KKLKK+W KQKK+++KSQ+
Sbjct:   50 VRTRFPPEPNGYLHIGHAKSMNMNFSLAFDKLGVEPSR-----RETLFRYDDTNPEAECAEYIDSIKEDVAWMGWKPVRTTYASDYFDKLYELAERLITEGHCYVCFQKSEDIEQCREAARTQAQARSKGLSDKDAEWPSGNPFSPWRDMEVAVNMERFRDMKKGKYDEGECCLRMKMDMTSSNLNMFDQVAYRIKFCAHPHVGEKWVIYPTYDFTHCVQDSLERVDFSICTLEFESRRESYYWLLHHLGMFKPMVYEMSRLNIEYMLLSKRKLLKLIETKFFHGWDDPRMPTIKGLRRRGYTAGTLNKFCDTIGVTRNENLIEYSFLQEIFRQEVDASARRVMAVLEPIKVVLTNPDHETVGKPLQVPDFPQKVDSSQHTVALTPTLYIDGADFREVDSKDYFGLAPGKWIGLKYANLCICCDEVRVSPETGEK----ELICTAAVLPPD------------------GKRPQGCVQWVPSN-GLKLEARLYDHLFKVPQPSDEDWEAQLNHESEVILSGARIDPSILLTEGGGGQELPSTGTHFQFERIGIFVVDPDTSPEKGLVMNRTAPLKESKAKLKVALQNSKSAAELEKEEKRKEHQRKALEAKAARACLDPKDLFKQPEYAGKFGAFDDSGVPTHDAANVPLTKSAVKKLKKDWAKQKKVFDKSQK 695
[Close]
BLAST of mRNA_P-littoralis_Contig100.80.1 vs. uniprot
Match: A0A1Z5JJD5_FISSO (Glutaminyl-tRNA synthetase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JJD5_FISSO)

HSP 1 Score: 630 bits (1626), Expect = 2.260e-216
Identity = 345/670 (51.49%), Postives = 444/670 (66.27%), Query Frame = 1 
Query:    7 RTRFPPEPNGYLHIGHAKSMHMNFHLAFEKLSLDTQHIPEDMRETIFRYDDTNPEAESQEYIDSIREDLEWMGWKPAQTTYSSDSFQLLYELAIKLIEGGKAYVCHQTKDDIFKCREIAK----ANAANLNTNAGDPCS-----PWRNR--PIQENLDIFEKMRTGQLDEGSATLRLKMDMTSPNPNMWDQVAYRIRYIPHPHAGDKWCVYPTYDYTHCLVDSLEDIDYSICTLEFETRRESYFWLLEALELYRPKVYEFARLNITRTLLSKRKLLKLVKGRKVRGWDDPRMPTIKGLRRRGYTAEILNKFCEDIGVTRNDNLIEVEKLEHWARSGLNVSSRRVMGALSPVKVTLTNLEETRE----VEALDVPFAPEAGSHKIRLTKTLYIDASDFRREDSKDYFGLAPGKMVGLKYCSATMRCDRVVDGEGGASAPPVELICSLGELSQESSAAPAGDVGADAATKRPGGRPKGNISWVSAEEAVRAEVRLYSHLFTVDSPDDRWEEQINPESEVVVSGAVVDPSVLE-------KEHSAGTPLQLERIGFFVVDKDSTPEL------LVLNRTVTLKEATGKS----AVPKDKSRKELQARQAAEKEARKRVPPQEMFVAMTDL---YSAFDDQGVPTTDQAGEPLSKSAIKKLKKEWDKQKKLYEK 1911
            RTRFPPEPNGYLHIGHAKSM+MNF LAF+KL++  +H     R TIFRYDDTNP+AE+ EYIDS+R DLEW+GWKP +TTYSSD+F  LY+ A++L++   AYVC  TK ++   RE+A     A A  L+ +   P +     P RNR   ++ NL++ EKM+ G   EG  TLRLKMD  S NPNM+D VAYRI+Y PHPHAG+ WC+YP+YD+TH + DSLEDIDYSICTLEFETRRE Y+W+L AL+L+RP VYE +RLN+  T+LSKR+L+KLV    VRGWDDPRMPT+ GLRRRGYT  ILN FC+DIG TR+ N++EV+KLE  AR  L  +SRR M AL P+KV +TN  E  +     E  + P  PEAG H + LT+ +Y+D++DFR EDSKDYFGLAP K VGLKY    + CD V++  G       +++   G L          D   D        +PK  +SWV +  +   E+R+Y+HLFTV  P D WE++INP+SE V + A++DPSV E        +  + T LQLER GFFVVD D+T +       +VLNRTV+LKE  GKS    + P +  RK + A    E+EAR  + P++ F    +    +S FDD+G PT D+ G+ ++KS  KKLKKE DK KKL  K
Sbjct:   37 RTRFPPEPNGYLHIGHAKSMNMNFSLAFQKLNVPPEH-----RRTIFRYDDTNPDAETAEYIDSLRRDLEWLGWKPERTTYSSDNFGKLYDFAVELVKKELAYVCDMTKAEMEAQRELAMKRAHARARGLDPDVEAPITDPDILPGRNRNTSVERNLELLEKMKMGLFAEGQYTLRLKMDFESSNPNMYDLVAYRIKYTPHPHAGNGWCIYPSYDFTHGICDSLEDIDYSICTLEFETRREPYYWILHALDLFRPAVYEMSRLNLQYTVLSKRRLIKLVDTGVVRGWDDPRMPTVSGLRRRGYTPVILNSFCDDIGATRSANVVEVKKLEQTARLALAATSRRAMAALDPIKVVITNYNEQSDENMVYEVQNSPTDPEAGVHTVMLTEVIYLDSTDFRIEDSKDYFGLAPNKAVGLKYYGGNLVCDEVIEKNG-------KIVELKGHL----------DNSPDRV------KPKTYLSWVPSN-SFPCEIRVYNHLFTVPEPSDLWEDEINPDSEQVFANALIDPSVAEVIDVNEIDKWKSNTALQLERFGFFVVDPDTTFDSKTRMGWIVLNRTVSLKEDKGKSGGEKSAPVNDGRKVVSA---DEREARMNIAPEDFFRLAPEYSGKFSKFDDEGFPTHDEEGKEVTKSMSKKLKKELDKHKKLVSK 674
[Close]
BLAST of mRNA_P-littoralis_Contig100.80.1 vs. uniprot
Match: A0A448Z9F5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z9F5_9STRA)

HSP 1 Score: 630 bits (1626), Expect = 4.580e-216
Identity = 363/683 (53.15%), Postives = 437/683 (63.98%), Query Frame = 1 
Query:    4 IRTRFPPEPNGYLHIGHAKSMHMNFHLAFEKLSLDTQHIPEDMRETIFRYDDTNPEAESQEYIDSIREDLEWMGWKPAQTTYSSDSFQLLYELAIKLIEGGKAYVCHQTKDDIFKCREIAKANAANLNTNAG-DPCS----------PWRNRP--IQENLDIFEKMRTGQLDEGSATLRLKMDMTSPNPNMWDQVAYRIRYIPHPHAGDKWCVYPTYDYTHCLVDSLEDIDYSICTLEFETRRESYFWLLEALELYRPKVYEFARLNITRTLLSKRKLLKLVKGRKVRGWDDPRMPTIKGLRRRGYTAEILNKFCEDIGVTRNDNLIEVEKLEHWARSGLNVSSRRVMGALSPVKVTLTNLEETRE-------VEALDVPFAPEAGSHKIRLTKTLYIDASDFRREDSKDYFGLAPGKMVGLKYCSATMRCDRVVDGEGG---ASAPPVELICSLGELSQESSAAPAGDVGADAATKRPGGRPKGNISWVSAEEAVRAEVRLYSHLFTVDSPDDRWEEQINPESEVVVSGAVVDPSVL----EKEHS---AGTPLQLERIGFFVVDKDSTPEL------LVLNRTVTLKEATGKSAVPKDK-------SRKELQARQAAEKEARKRVPPQEMFVAMTDL---YSAFDDQGVPTTDQAGEPLSKSAIKKLKKEWDKQKKLYEKS 1914
            IRTRFPPEPNGYLH+GHAKS++MNF LAFEKL +     PE+ R  IFRYDDTNP+AES+EYIDS   DLEW+GW P +TTYSSD+FQ LYELAIKLI+ G AY C  TK ++   RE+A      L  N G DP            P RNR   ++ NLDIFE+M+ G  DEG+ TLRLKMD  S NPNM+D VAYRIRY  HPHAG+ WC+YP YDYTH + DSLEDIDYSICTLEFETRRE YFW+L AL++YRP VYE +RLN+  T+LSKR+LLKLV    VRGW+DPRMPT+ G RRRG+TAEI+NKFC D+G TR  N+IE+EKL   AR  L+  ++R M AL P+KV +TN E+ +         E  + P  P  GSH I LT+TLYID+SDFR  D   Y+GLAP K VGLKY    + CD VV  EG      +  VEL C L               G+D   K     PK  ISWV A+ A+  E+R+Y+HLFTV  P D WEE+INP+SE+V     +DPSVL    +K+ S   +   LQ ER+G+FVVD DST +       LV NRTVTLKE   K      K       +RK  Q    A KEAR ++ P   F    +    YS FDD GVPT D  G  L+KSA+KKLKKE DK  K  +K+
Sbjct:   37 IRTRFPPEPNGYLHMGHAKSINMNFSLAFEKLGV----APENRR-CIFRYDDTNPDAESKEYIDSFVHDLEWLGWTPERTTYSSDNFQKLYELAIKLIKDGLAYCCDMTKAEMEAQRELAMQRV--LARNKGEDPDEVAPIPSEDILPGRNRDTSVERNLDIFERMKMGLYDEGTWTLRLKMDFESSNPNMYDLVAYRIRYTSHPHAGNGWCIYPNYDYTHGICDSLEDIDYSICTLEFETRREPYFWILWALDMYRPNVYEMSRLNLQYTVLSKRRLLKLVNNGIVRGWNDPRMPTLSGYRRRGFTAEIINKFCTDLGATRASNVIEMEKLYTTARVALSEKTQRAMAALEPIKVVVTNWEDAKGNGGEGMVFEVQNSPTDPSMGSHTIELTQTLYIDSSDFRLVDESSYYGLAPNKAVGLKYYGGNLICDEVVFKEGANGKEKSQIVELKCHLD--------------GSDDRVK-----PKTWISWVPAQTAIPCEIRVYNHLFTVPEPSDLWEEEINPKSEIVYENGFIDPSVLPLVDKKDISLVKSNQALQFERMGYFVVDVDSTFDSSTRTGKLVFNRTVTLKEEVSKKKATLSKREEEANEARKAKQKADLAAKEARLKIDPINFFKEAEEFKGKYSKFDDNGVPTHDAEGNELTKSAMKKLKKEQDKHVKQLKKA 693
[Close]
BLAST of mRNA_P-littoralis_Contig100.80.1 vs. uniprot
Match: A0A8K1FK98_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FK98_PYTOL)

HSP 1 Score: 622 bits (1604), Expect = 3.630e-213
Identity = 338/663 (50.98%), Postives = 434/663 (65.46%), Query Frame = 1 
Query:    1 QIRTRFPPEPNGYLHIGHAKSMHMNFHLAFEKLSLDTQHIPEDMRETIFRYDDTNPEAESQEYIDSIREDLEWMGWKPAQTTYSSDSFQLLYELAIKLIEGGKAYVCHQTKDDIFKCREIAKANAANLNTNAGDPC---------SPWRNRPIQENLDIFEKMRTGQLDEGSATLRLKMDMTSPNPNMWDQVAYRIRYIPHPHAGDKWCVYPTYDYTHCLVDSLEDIDYSICTLEFETRRESYFWLLEALELYRPKVYEFARLNITRTLLSKRKLLKLVKGRKVRGWDDPRMPTIKGLRRRGYTAEILNKFCEDIGVTRNDNLIEVEKLEHWARSGLNVSSRRVMGALSPVKVTLTNLEETREVEALD--VPFAPE------AGSHKIRLTKTLYIDASDFRREDSKDYFGLAPGKMVGLKYCS--ATMRCDRVVDGEGGASAPPVELICSLGELSQESSAAPAGDVGADAATKRPGGRPKGNISWVSAEEAVRAEVRLYSHLFTV---DSPDDRWEEQINPE-SEVVVSGAVVDPSVLEKEHSAGTPLQLERIGFFVVDKDSTPELLVLNRTVTLKEATG----KSAVPKDKSRKELQARQAAEKEARKRVPPQEMFVAMTDLYSAFDDQGVPTTDQAGEPLSKSAIKKLKKEWDKQKKLYE 1908
            ++RTRFPPEPNGYLHIGHAKSMHMNF  AFEKL      +PED RET FRYDDTNPEAES+EYI +I + ++W+G++P + TYSS+ F  LY LA+KLI+ GKAYVCHQ+K +I    E+++      +   GD           SP+R+R + ENL  FEKMR G   EG A LR+KMD+ SPNPNMWD VAYRI+Y+PHPH GDKWC+YPTYDYTHC+VD+LE IDYSICTLEFETRRESY+WLL+ L+LY+PKVYEFARL +T T LSKRKLLKLV    VRGWDDPRM T+ GL+RRG+T EI+ +FC+DIGVTR  + I++E+L   AR  L   S+R+M  L PV+V + N +E    E L   VP  P+         H + L+K++++D SD R ED+KD++GLA  K V LKY       + D   DG        +  +  + + S E                    +PKG ++W  A+ +   E+R+YSHLF V      +  WE  ++ E SE+V   A VDP    K  +    +Q+ERIG+FV DKDSTP+  V N+ V L+EA+       A   + SRK+ QA Q A K+ + +VPP EMF   T+LYSAFD +G+PT D AG PL+K+ IKKLKKE DKQKKL+E
Sbjct:   34 KVRTRFPPEPNGYLHIGHAKSMHMNFFEAFEKLG-----VPEDKRETYFRYDDTNPEAESEEYIQAIHDTIKWLGYEPTKVTYSSEYFPELYALALKLIKKGKAYVCHQSKAEI----EVSRTALQQFHATPGDKTEANVPEAAKSPYRSRSVDENLLEFEKMRVGLYAEGEACLRMKMDLASPNPNMWDHVAYRIKYVPHPHIGDKWCIYPTYDYTHCIVDALEHIDYSICTLEFETRRESYYWLLDELDLYKPKVYEFARLAMTYTQLSKRKLLKLVTSGMVRGWDDPRMGTLNGLKRRGFTPEIIKRFCKDIGVTRVQSTIQIERLYSVARDVLGDKSKRIMAVLDPVEVVIENFDEVPNKELLKCKVPDYPQDVERDNGAHHFVTLSKSVFLDRSDVRAEDTKDFYGLALNKQVRLKYAYNFTCTKLDTAADGR-------ITKVYGVVDWSNEV-------------------KPKGILTWTPAK-SPEVEIRVYSHLFKVPELSGNEPNWESMLDLENSELVYKHARVDPESFAKNLTDDVAVQIERIGYFVSDKDSTPKKKVFNQIVPLREASSLVDETKASDANASRKDAQAAQLAAKKEKMKVPPTEMFKTQTELYSAFDAEGLPTHDAAGAPLTKTTIKKLKKEQDKQKKLHE 660
[Close]
BLAST of mRNA_P-littoralis_Contig100.80.1 vs. uniprot
Match: A0A7S4AGQ9_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AGQ9_9STRA)

HSP 1 Score: 621 bits (1602), Expect = 2.360e-212
Identity = 350/681 (51.40%), Postives = 435/681 (63.88%), Query Frame = 1 
Query:    4 IRTRFPPEPNGYLHIGHAKSMHMNFHLAFEKLSLDTQHIPEDMRETIFRYDDTNPEAESQEYIDSIREDLEWMGWKPAQTTYSSDSFQLLYELAIKLIEGGKAYVCHQTKDDIFKCREIAKANAANLNTNAG-DPCS----------PWRNRP--IQENLDIFEKMRTGQLDEGSATLRLKMDMTSPNPNMWDQVAYRIRYIPHPHAGDKWCVYPTYDYTHCLVDSLEDIDYSICTLEFETRRESYFWLLEALELYRPKVYEFARLNITRTLLSKRKLLKLVKGRKVRGWDDPRMPTIKGLRRRGYTAEILNKFCEDIGVTRNDNLIEVEKLEHWARSGLNVSSRRVMGALSPVKVTLTNLEETRE------VEALDVPFAPEAGSHKIRLTKTLYIDASDFRREDSKDYFGLAPGKMVGLKYCSATMRCDRVVDGEG--GASAPPV-ELICSLGELSQESSAAPAGDVGADAATKRPGGRPKGNISWVSAEEAVRAEVRLYSHLFTVDSPDDRWEEQINPESEVVVSGAVVDPSVL----EKEHS---AGTPLQLERIGFFVVDKDSTPEL------LVLNRTVTLKEATGKSAVPKDK-------SRKELQARQAAEKEARKRVPPQEMFVAMTDL---YSAFDDQGVPTTDQAGEPLSKSAIKKLKKEWDKQKKLYEK 1911
            IRTRFPPEPNGYLH+GHAK+++MNF LAFEKL +     PE+ R  +FRYDDTNP+AES+EYIDS   DLEWMGW P +TTYSSD+FQ LYELAI LI+ G AY C  +K ++   R++A      L  N G DP            P RNR   ++ NL+IFE+M+ G  DEG+ TLRLKMD  S NPNMWD VAYRIRY  HPHAG+ WC+YP YDYTH + DSLEDIDYSICTLEFETRRE Y+W+L AL++YRP VYE +RLN+  T+LSKR+LLKLV    VRGW+DPRMPTI G RRRG+TAEI+NKFC D+G TR  N+IE+EKL H AR  L+  ++R M AL P+K+ + N E+ +        E  + P  P+ GSH I + +TLYID+SDFR  D   Y+GLAP K VGLKY    + CD VV  EG  G     + EL C L +    +                   +PK  ISWV AE A+  E+R+Y+HLFTV  P D WEE+IN ESE+V     +DPSVL    +K+ S   +   LQ ER+G+FVVD DST +       L+ NRTVTLKE   K      K       +RK  Q    A KEAR ++ P++ F    +    YS F+D G+PT +  G  L+KSA+KKLKKE DK  K  +K
Sbjct:   44 IRTRFPPEPNGYLHVGHAKAINMNFSLAFEKLGV----APENRR-CVFRYDDTNPDAESKEYIDSFVHDLEWMGWTPERTTYSSDNFQTLYELAITLIKKGLAYCCDMSKAEMESQRDLAMQRV--LARNKGEDPDQVAPVPSTDVLPGRNRDTSVERNLEIFERMKMGLYDEGTWTLRLKMDFESSNPNMWDLVAYRIRYTNHPHAGNGWCIYPNYDYTHGICDSLEDIDYSICTLEFETRREPYYWILWALDMYRPNVYEMSRLNLQYTVLSKRRLLKLVDNHIVRGWNDPRMPTISGYRRRGFTAEIINKFCTDLGATRAANVIEMEKLSHTARMALSEKTQRAMAALEPIKIVVQNWEDAKTNSEGVVFEVQNSPTNPDMGSHTIEIAQTLYIDSSDFRLVDESGYYGLAPNKAVGLKYYGGNLVCDEVVFKEGADGKEKSQIKELKCRLDKSEGRA-------------------KPKTWISWVPAETAIPCEIRVYNHLFTVPEPTDLWEEEINSESEIVYENGFIDPSVLALVDKKDISPIRSNQALQFERMGYFVVDIDSTYDSSTGTGRLIFNRTVTLKEEVSKKKANLSKREEEANVARKAKQKADLAAKEARMKIDPKDFFKEAEEFKGKYSKFNDSGIPTHEADGTELTKSAMKKLKKEQDKHVKQLKK 698
[Close]
BLAST of mRNA_P-littoralis_Contig100.80.1 vs. uniprot
Match: A0A7S0T9F5_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0T9F5_9STRA)

HSP 1 Score: 617 bits (1590), Expect = 1.210e-210
Identity = 352/676 (52.07%), Postives = 438/676 (64.79%), Query Frame = 1 
Query:    4 IRTRFPPEPNGYLHIGHAKSMHMNFHLAFEKLSLDTQHIPEDMRETIFRYDDTNPEAESQEYIDSIREDLEWMGWKPAQTTYSSDSFQLLYELAIKLIEGGKAYVCHQTKDDIFKCREIAKANAANLNTNAGDPCS----------PWRNRPI--QENLDIFEKMRTGQLDEGSATLRLKMDMTSPNPNMWDQVAYRIRYIPHPHAGDKWCVYPTYDYTHCLVDSLEDIDYSICTLEFETRRESYFWLLEALELYRPKVYEFARLNITRTLLSKRKLLKLVKGRKVRGWDDPRMPTIKGLRRRGYTAEILNKFCEDIGVTRNDNLIEVEKLEHWARSGLNVSSRRVMGALSPVKVTLTNLEETRE-------VEALDVPFAPEAGSHKIRLTKTLYIDASDFRREDSKDYFGLAPGKMVGLKYCSATMRCDRVVDGEGGASAPPVELICSLGELSQESSAAPAGDVGADAATKRPGGRPKGNISWVSAEEAVRAEVRLYSHLFTVDSPDDRWEEQINPESEVVVSGAVVDPSV---LEKEH----SAGTPLQLERIGFFVVDKDSTPEL-----LVLNRTVTLKEATGKSAVPK-----DKSRKELQARQAAEKEARKRVPPQEMFVAMTDL---YSAFDDQ-GVPTTDQAGEPLSKSAIKKLKKEWDKQKKLYEK 1911
            IRTRFPPEPNGYLH+GHAKS++MNF LAF+KL +     PE+ R TIFRYDDTNP+AES+EYIDS   DLEW+GW P +TTYSSD+FQ LY+LAI LI+ G AY C  TK ++   R++A       NT   DP            P RNR    + NL+IFEKM+ G  DEG+ TLRLKMD  SPN NM+D VAYRIRY  HPH+G+ WC+YP YD+TH + DSLEDIDYSICTLEFE RRE Y+W+L AL+++RP VYE +RLN+  T+LSKR+LLKLV    VRGW+DPRMPT+ G RRRG+T EI+N FC D+G TR  N+IE+EKL + AR  L+  ++R M AL P+K+ +TN E+ +         E  + P  P  GSH I +T +LYID+SDFR  D KDY+GLAP K VGLKY    + CD VV  EG  S    EL C L                 D A  R   +PK  ISWVSAE A+  EVR+Y+HLFTV  P D WEE+INPESE++   A VDPSV   ++K+      +   LQ ER+G+FVVD DST E      LV NRTVTLKE   K  + K     + +RK  Q    A KEAR ++ P+++F    +    YS +D++ GVPT D  G  L+KS +KKLKKE DK  K  +K
Sbjct:   42 IRTRFPPEPNGYLHMGHAKSINMNFSLAFDKLGV----APENRR-TIFRYDDTNPDAESKEYIDSFVHDLEWLGWTPERTTYSSDNFQKLYDLAIVLIKKGLAYCCDMTKAEMEVQRDLAMKRVLARNTGR-DPDEEAPIPSPDILPGRNRDTSPERNLEIFEKMKMGLYDEGTWTLRLKMDFDSPNFNMYDLVAYRIRYTSHPHSGNGWCIYPNYDFTHGICDSLEDIDYSICTLEFENRREPYYWILWALDMFRPNVYEMSRLNLQYTVLSKRRLLKLVNNNIVRGWNDPRMPTLSGYRRRGFTPEIINTFCTDLGATRAANVIEMEKLFNTARVTLSEKTQRAMAALEPIKIVVTNWEDAKANGDVGMVFEVQNSPTDPSMGSHNIEVTSSLYIDSSDFRLVDQKDYYGLAPNKAVGLKYYGGNLICDEVVFEEGSDSKVK-ELKCRL-----------------DNAESRE--KPKTWISWVSAETAIPCEVRVYNHLFTVPEPTDLWEEEINPESEIIYENAFVDPSVRSLVDKKDVSPIKSNQALQFERMGYFVVDVDSTYESNGNGRLVFNRTVTLKEEVFKKKISKREEDANAARKAKQQADLAAKEARMKIDPKDLFKLAEEYKGKYSKYDEKTGVPTHDADGTELTKSGMKKLKKEQDKHAKQLKK 691
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig100.80.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJX2_ECTSI0.000e+089.10Glutaminyl-tRNA Synthetase n=1 Tax=Ectocarpus sili... [more]
A0A835Z3U2_9STRA1.390e-28062.27Glutaminyl-tRNA synthetase n=1 Tax=Tribonema minus... [more]
A0A6H5JZH1_9PHAE1.800e-27557.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TED8_9STRA1.580e-26861.29Glutamine-trna ligase n=2 Tax=Monodopsidaceae TaxI... [more]
A0A7S2GDR5_9STRA9.650e-22352.23Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A1Z5JJD5_FISSO2.260e-21651.49Glutaminyl-tRNA synthetase n=2 Tax=Fistulifera sol... [more]
A0A448Z9F5_9STRA4.580e-21653.15Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A8K1FK98_PYTOL3.630e-21350.98Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S4AGQ9_9STRA2.360e-21251.40Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S0T9F5_9STRA1.210e-21052.07Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig100contigP-littoralis_Contig100:301213..313051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FJX2
PFAMstRNA-synt_1c,tRNA-synt_1c_C,tRNA-synt_1e,tRNA_synt_1c_R1
Model size2121
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01883,ko:K01885,ko:K01886
KEGG ReactionR03650,R03652,R05578
KEGG Pathwayko00860,ko00970,ko01100,ko01110,ko01120,map00860,map00970,map01100,map01110,map01120
KEGG ModuleM00121,M00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Exons13
Evalue0.0
EggNOG OGsCOG0008@1|root,COG0215@1|root,KOG1148@2759|Eukaryota,KOG2007@2759|Eukaryota
Ec32 ortholog descriptionGlutaminyl-tRNA Synthetase
Ec32 orthologEc-10_000780.1
EC6.1.1.16,6.1.1.17,6.1.1.18
Descriptioncysteinyl-tRNA aminoacylation
Cds size1860
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko02048,ko03016
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789340.673807-UTR-P-littoralis_Contig100:301212..3014101680789340.673807-UTR-P-littoralis_Contig100:301212..301410Pylaiella littoralis U1_48UTRP-littoralis_Contig100 301213..301410 -
1680789340.8242788-UTR-P-littoralis_Contig100:312988..3130511680789340.8242788-UTR-P-littoralis_Contig100:312988..313051Pylaiella littoralis U1_48UTRP-littoralis_Contig100 312989..313051 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789340.6844125-CDS-P-littoralis_Contig100:301410..3016171680789340.6844125-CDS-P-littoralis_Contig100:301410..301617Pylaiella littoralis U1_48CDSP-littoralis_Contig100 301411..301617 -
1680789340.6930757-CDS-P-littoralis_Contig100:302006..3021411680789340.6930757-CDS-P-littoralis_Contig100:302006..302141Pylaiella littoralis U1_48CDSP-littoralis_Contig100 302007..302141 -
1680789340.7095816-CDS-P-littoralis_Contig100:302417..3025071680789340.7095816-CDS-P-littoralis_Contig100:302417..302507Pylaiella littoralis U1_48CDSP-littoralis_Contig100 302418..302507 -
1680789340.720098-CDS-P-littoralis_Contig100:304500..3047941680789340.720098-CDS-P-littoralis_Contig100:304500..304794Pylaiella littoralis U1_48CDSP-littoralis_Contig100 304501..304794 -
1680789340.729076-CDS-P-littoralis_Contig100:305225..3053931680789340.729076-CDS-P-littoralis_Contig100:305225..305393Pylaiella littoralis U1_48CDSP-littoralis_Contig100 305226..305393 -
1680789340.7372386-CDS-P-littoralis_Contig100:305847..3059471680789340.7372386-CDS-P-littoralis_Contig100:305847..305947Pylaiella littoralis U1_48CDSP-littoralis_Contig100 305848..305947 -
1680789340.7500217-CDS-P-littoralis_Contig100:306172..3063241680789340.7500217-CDS-P-littoralis_Contig100:306172..306324Pylaiella littoralis U1_48CDSP-littoralis_Contig100 306173..306324 -
1680789340.7673383-CDS-P-littoralis_Contig100:306851..3069871680789340.7673383-CDS-P-littoralis_Contig100:306851..306987Pylaiella littoralis U1_48CDSP-littoralis_Contig100 306852..306987 -
1680789340.7762613-CDS-P-littoralis_Contig100:307414..3076201680789340.7762613-CDS-P-littoralis_Contig100:307414..307620Pylaiella littoralis U1_48CDSP-littoralis_Contig100 307415..307620 -
1680789340.7884078-CDS-P-littoralis_Contig100:308351..3084861680789340.7884078-CDS-P-littoralis_Contig100:308351..308486Pylaiella littoralis U1_48CDSP-littoralis_Contig100 308352..308486 -
1680789340.7968652-CDS-P-littoralis_Contig100:308890..3089951680789340.7968652-CDS-P-littoralis_Contig100:308890..308995Pylaiella littoralis U1_48CDSP-littoralis_Contig100 308891..308995 -
1680789340.8059378-CDS-P-littoralis_Contig100:311560..3116011680789340.8059378-CDS-P-littoralis_Contig100:311560..311601Pylaiella littoralis U1_48CDSP-littoralis_Contig100 311561..311601 -
1680789340.8158948-CDS-P-littoralis_Contig100:312897..3129881680789340.8158948-CDS-P-littoralis_Contig100:312897..312988Pylaiella littoralis U1_48CDSP-littoralis_Contig100 312898..312988 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig100.80.1prot_P-littoralis_Contig100.80.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig100 301411..312988 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig100.80.1

>prot_P-littoralis_Contig100.80.1 ID=prot_P-littoralis_Contig100.80.1|Name=mRNA_P-littoralis_Contig100.80.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=620bp
MHMNFHLAFEKLSLDTQHIPEDMRETIFRYDDTNPEAESQEYIDSIREDL
EWMGWKPAQTTYSSDSFQLLYELAIKLIEGGKAYVCHQTKDDIFKCREIA
KANAANLNTNAGDPCSPWRNRPIQENLDIFEKMRTGQLDEGSATLRLKMD
MTSPNPNMWDQVAYRIRYIPHPHAGDKWCVYPTYDYTHCLVDSLEDIDYS
ICTLEFETRRESYFWLLEALELYRPKVYEFARLNITRTLLSKRKLLKLVK
GRKVRGWDDPRMPTIKGLRRRGYTAEILNKFCEDIGVTRNDNLIEVEKLE
HWARSGLNVSSRRVMGALSPVKVTLTNLEETREVEALDVPFAPEAGSHKI
RLTKTLYIDASDFRREDSKDYFGLAPGKMVGLKYCSATMRCDRVVDGEGG
ASAPPVELICSLGELSQESSAAPAGDVGADAATKRPGGRPKGNISWVSAE
EAVRAEVRLYSHLFTVDSPDDRWEEQINPESEVVVSGAVVDPSVLEKEHS
AGTPLQLERIGFFVVDKDSTPELLVLNRTVTLKEATGKSAVPKDKSRKEL
QARQAAEKEARKRVPPQEMFVAMTDLYSAFDDQGVPTTDQAGEPLSKSAI
KKLKKEWDKQKKLYEKSQE*
back to top

mRNA from alignment at P-littoralis_Contig100:301213..313051-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig100.80.1 ID=mRNA_P-littoralis_Contig100.80.1|Name=mRNA_P-littoralis_Contig100.80.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=11839bp|location=Sequence derived from alignment at P-littoralis_Contig100:301213..313051- (Pylaiella littoralis U1_48)
CAGATCCGGACTCGTTTCCCGCCAGAGCCTAATGGCTACCTTCACATCGG
ACACGCCAAGTCCATGCACATGAACTTTCACCTCGCCTTCGAGAAGCTCT
CCCTGGACACGCAACATATACCCGAGGACATGAGAGAAACCATTTTCCGC
TACGGTAAGCAAGGGAGCACTTTTTTACAACCACAGCTTGATAAATGCTG
CTGCTAGTGTCTTTCTCGCCACTGCTTTGTAAGTGTACATTTCTGCCTCC
GTTGGTTTCACGTGCGTCTTTCGATTTGGTGATGGTTTGCCTCCACAACT
TGATGAACTCCCGAGCGAGCGCTTTTTTTCCATCACCGCTATCCTGTACG
CTTGTATCATATCGCTGTACTGCAATTGCCGCGAGCACTTAGGGCTATCC
TGAGGATTTCTTCGCCTGATTGGTTCTGGGCTTCTCCCACAGATGTACCG
TAGGTCGGATTAGACTCCACGAGTCTCCTGGACCGCTTTCCAACTCTCAA
CTCCCAGTACCCCACAACGAAGACGGTGCCAACACCAAAGATTGGCGACA
TTTCAGAACGACATGGGCCCATCATTACAGCCATGCCTGTTTTCGTTTTC
CGAAAGCTTCAAACGAGATGGCTCCAATATTTCATCCATGTCTGTATCCG
TTTTTCGTAAAGCTCCGGACCATCTCCTTTCATGATTTCAACACCGACGC
CTCATTTTCTTTTCGGCACCAAACCTCTTTCTGCTGTACATGGTTTACCG
TAATCGAGCTTTTACAATCGTTCCAAGGGGTCCCGTGTGGCTTCTTGCGC
CTCCTACGGTACTCCCATCTCGCCTCCGAGAAGGAAGGACTGAGCGCCCA
AGGAAACCCGCGGATTATTTCCACTATCATATCAAAGTACTGTTTCAACA
GAAGCACTTTCATCATTGCTAATTCATTTCACTGCAAAGGTCGTCTTGCC
GTCTTTTTTTTTCTTTCGCATCGGTTTTTCTTGTTTTTTTTTAGAAGAGA
AGGTGGGTTCTGAAGGGAAATGTCCTTGTTGCTTTTTGAGACAGCAACGC
CAGTATCAACGCTCGAGAGCTCTTAGCTTTCGAGCTTGAAAAACATCCAT
CCGTGAAGACGGGTCTTTTGCTATCACGACGCTAGCTTGGTACCTCGTTG
TCCTCAATCTTCAGTCACGACGCCAGCTTGGTATCTCGTTGTCCTCAATC
TTCAGTCACGACGCCAGCTTGGTACCTCGTTGTCCTCAATCTCCGGTCGC
AACGCTAGCTTGGTACCTCGTTGTCCTCAACCTTCAGCTACTAATGGTGC
TGCTTCTCTTCCGCCGCTGTTGTTGCTGCGATTGCTGCTGTTACTTTCTC
TACTACTGCTGCCTTTCACTGGTGGAAACCTGGAAACGTCATCCATTCCT
GCGGCTTGCGGCCCTGTCCCGGTCGTGTTTCCGGTTGAATGCGAGATTAG
ACGACACAAATCCGGAGGCGGAGAGCCAAGAGTACATCGACGTGAGTAGC
TTCGCTGTACGCATGACTGGCACATTTTCCTTTGTGTCTTGCCCCTCCCC
CCCCGCATACGTTAATTGCTTGAGTTTCTCCACAACAAATAGAGATTCAG
CGCCAAAAAAGGGCGATTTCGGAAAGGGTTTGTCGTGAGCTGTCCAAAAT
CTTGTCGTTTGACGTTGGTTCATAACCTCTTATTAAGGGGTATTCGAGCT
CAAATATAGATGCAGAAGGGGTGAGGTAAGGTAAAGATCACCCACAGGAC
GTTGGCTGCTTAAAAATTGTGTTGGTGTTTGTGTTTGTGTTTTTGTTTTT
TTGCGGAGGCCATTGGCCCTCATTTTCCTCTCGGCTAAACAAACTGTTTG
CTCAGCTCGTTGTTGCGTACCTGGTATCTACTGCGTATCTTACGTCGTGT
CTTTTTGCGTTTTTTAATCGCTTTTGATTCCGTTTTTTATTTTCCAGTGT
TGTATGTCGTCGTATTTCTTCGCACCTCGAAGGTGCTTCTCTCGAGTGCG
TGCGTGTCCCTCCGCGTGACGAAAACCCTCAAGCCGAATTTATGGGCGCT
ATGGGCGGCGGAATTCAGCGGAGTTTTTCCGTTTCCGCCGCCCGCTCGAT
GTTGGTGACTTCAAATATGTTTTAATTTCCGATGGAGATCAGTATGATGG
GATCAGCATTCGCACTATGTTCGTCGTTGTCGTCGTGGTGGCCGTTGCTG
AGGTGGCAGTGGCAGTACATGTGTCGGGGAAGTGATTGTTGTACTGAAGG
TGTTTCTTGGATGTATACCCAGCGGCTCTTGCCCCCCGAAAATTCGTGTT
GTAGGCGTTCCATAACTGAAGTACACCGATAAGGTAACGGGCGTCTCCGA
AGTTTCACTTTTTTTTAAGAGAAGCCACTGGTGTTGGTTCGAGTTTTACT
ACAAAATGCCTGCAGAGCATTTTACAAAGAAGGTTCGACCTATTCCCTCG
CCCCAAGTCGCCTTCATATCCTGTACAAGAAATTTCGAGCAAAATTATTT
TTCGTCCACAGCAGTGTGCAAGTGCAACAGGCTCTCATTTTCTCTCTTGT
CAACTCGAAGATTTTCCCTGATTACGGATTCTGCGCAAGATACCATCCAT
TCGTTTCATATGAGCAATCTCATTCGCATTCGATTAAGTTCGCATTCGCA
TCCGATGAAAATTATCACAGGCGTTCGAATTTCACGTCATATAGCATCCC
CCCTGGCCCCCCTGAGCCAGCCTTTGATTTGATCATTGATTGCACCGCAA
ATAAAGGGTATAGATATGCATTCCAAAAACAGTTGCAGGTAGCGACAGGA
TGTCGACACTGTCGCCACCTGTCTCCGATACTGACATACTGGTACGAAGT
ATCTCCACGCATGAAACGCCACACGAAGTACGACGTATCTGCGCGGGGGT
TCCCTCTCAGCTACGTCAAGCTTCCGATGATGCGTTCTTTCTCTCATTAT
TTTGCTCTTTTAGTTTCGGACGCTTAAGAACGCCTTTCCGCGTGACGAAA
ACCCTCAAGCCGAATTTATGGGCGTCATGGGCGGTGGAATCCCGTTGAGT
TTTTCCGCCTCCGCCGCCCGCTCGACGTTGGTGACTTGAAATATGTTTTA
ATTTCCGATGGAAGGCTTCTTCTAGGCTTTTTTGCAACCCGTACTTATCA
TCTGTATGTTTTCAAAAAAGAGGACGGAGATCTAGCCAATACCTTTTCAT
GACTGGGCTATTACGTTCATGTCGTGTAGATTCAGAGCACCACCACCTTT
AATTTAACTATGGTATGTGTCATGAAAGACGGGAAGGTCTAAGACGTCCC
TAACTTATGCGTTGATTCGGAGCACAACCTCAGCTTGAAGTTTAGGCAAT
TGCCGCATGACAAGAGGTTTTAGACGTCCCCATTTATGCACATGAAGGAG
AGTACATGGCCTCCACTGTATTGTGCCACTGTGCGCTGTTTCGTTTTCAT
TTCCTCATCCTTGCCTAATCTGTGCACCCTTCTCTTTCATTTTTTTTATG
TTGGTGTCCGGCCAGGGTCGCAAAATGAAAGAAAAAGTACACAGCTCATC
CTTGGCGGCGTTTTGGACGATTCGTGTTTTTGTCAATGTATTATCGCAAG
CAAACACAATCTCTCTCTCGTTCTCTATCTCTCCATTTCTCTGCATGACG
AAAACCCTCAAGCCGAATTTATGGGCGCCATGGGCGGTGGAACTCAGCGG
AGTTTTTCCGTTTCCGCCGCCCGCTCGACGTTGGTGACTTGAAATATGTT
TTAATTTCCGACAGAGAAGAACAGACGGGGTTTGTGTTCTTGGTGGGCGT
TATGGTTCTCGATTTGTGTCTTACCTTGAAACACGAACCTGAGAATCCGA
TGGAGACGCCGCTACCGGTGAACGATATACTGAACACACACCCCCAAACA
CACATCCTTTTTCACATTGAAGAATGACCGCTCGTCCCGGACGAGGCCCA
GTGGGCTGTTCGGTGGTCCTTTGCCTACTTTCTTCCTTCCGATGGGGTGA
TCATGACGTCGGCTTTTTGGATCGTGACGCGATCGATGACCATTAACCAA
CCGCAGTCTATCAGAGAGGACCTTGAGTGGATGGGTTGGAAGCCAGCGCA
GACGACATACTCCTCGGACTCTTTCCAGCTGCTCTACGAATTGGCGATCA
AGCTCATCGAGGTACGTTCCCGAAGCACCGTGTATTGGGGGTATCGTGGT
TGAAATGTCGAAAGTGAGGGGGCACTGCCCTTTTTGACGGATACGGCATG
CAGGACACGCAGCGATCAAGCTATGTTCAGCTGGCGGCTTCGTAATGGTA
ATGTCCTCTGAACTTTGTGCTTCTTAATACGATACACAGACAACACTGGA
TTTTCATGCTTTGTTCTTTGCATACTTGGGCTCACCGAAGAACGGCTGTT
TCATCTAGTCAATGCCCATTAGTTTCCATTTTAGTGTTTGTTGGTGCACA
TTTTCCCCACTCCTTACCCCACTTGTGCTGCGAGGTAGCATGCGTGTGCT
TGAACGTTGCAACCTGCCCCGCACCTACCTCTGACCCTCCCCCACCCACG
ACCCAACCCCGACAGGGCGGGAAGGCGTACGTGTGCCACCAGACCAAGGA
TGATATCTTCAAGTGTCGAGAGATCGCCAAGGCGAATGCGGCCAATCTCA
ACACGAACGCGGGGGACCCTTGCAGCCCCTGGAGGAATAGGCCCATCCAG
GTTTGTTTGCAGAACGACAGAAAAGAACACGCTTTGATGATGTAAAGCTC
GACTTGCACTCTGGCGCTTGTTTCTTTTTTTCACTTTTTCGATGTACAGC
ATTATCATCTGGTATCCATACGGCATCATACCACGGAAGAACGTTTGGCT
GTTGTGCCATGGTTGATAAGTGCGAGGGACGACGTTGGAACAAGACCGTT
TTTGTCCAAACGTCAAGGTCGCTGCGGCGGGGGAAAACATTTTGTTTGAG
TTTTTGTTTAGTTTTCTTACGTAAGACACATCAATGCGTCCGTCTCTTAT
TAGACGAGTCGAGGACCTGGAGTAAATTAGCAACGAACACAAGGAAGAAG
ATAAATCTCTTTCACTCATCAGAACAGATAATTAGCGTTGCAGCTCCCCC
GAGCTTTTCATTTGTTTGTTTTTTTTTTCGTCCCTGGGGGCTGAACAGGA
AAAAAAAATCCGTCGACACGTCCGATACATTTACTGTTGGTGCACAGCAG
TGTACAGTAGACAAAATCACAACTTTGGAAATGAGCATTTTTACCACTGT
ACGATACAACGTGTATACGAAGTATATCACAGCATGCCGTCTCTTTCTCA
CTTTTTTGTCTTGATTCCCTCTCTGACCCACGCTTTTTTTATCCTACTGT
TTGTTGTGCGATATTTTGGCGTGTTGTCTTGTATTTTTCGTTCCGTGCGT
GGCCGGGTGTTGTCGGCTGCGGCTTCCCCAGGAAAACCTGGATATTTTCG
AAAAGATGCGGACTGGTCAGTTGGACGAAGGTTCCGCCACCCTTCGGCTG
AAGATGGACATGACCTCGCCCAACCCCAACATGTGGGACCAGGTGGCGTA
TCGCATCCGGTACATCCCCCACCCCCACGCTGGGGACAAGTGGTGCGTCT
ACCCCACCTACGACTACACGCACTGCCTGGTGGACAGGTAAGGAGGAGGA
GGAGGAGGAGGACGATATCGACGCAAAATGCAACCAAGCAAGGGTTTATT
TCTCTTTTTCTGAAAGTGCCTGATACAACCGCCGGCTGGAGTACGATTTT
TGGTGTAAGTAGTTCTACTTGAATTGCAACTTTTGTTTTGTACCTGGCGA
AGCTTGTTGAGTTGTTCTTGAGGTACAGCAGTATTTTCTTCGACCTTTTT
TTTTTTTTTGGCGTGCCTTGGTTGATCGACAGCCAAATCAAGACGCACAG
AAGCGATTCGATGATCGGCTCGAACCTGAAACTTTAGTCTGGAATTGTTC
ACCCGCGACGTTGATGTTCAATCCGTACCCTGACATTTCTGTGTTGTTCG
AAATATATCCGATTTACCATGTTTTTGTCCAATTCTCTTTTTCTTCTTCC
TATTTTTCGTCCAGCCTCGAAGACATCGACTATTCCATCTGCACCCTGGA
GTTTGAGACACGACGAGAATCGTACTTCTGGCTGCTGGAGGCCCTCGAGC
TGTACCGACCAAAGGTTTACGAGTTTGCGAGGCTCAACATCACCCGCACG
GTGAGTGCTCCTTCCATTCCCATCCAAAATCGATTGTACTTTGGCTTGTT
TCCGTCGACTTCGTCGGCCCTTTTTTCATGTTGGCGTCGTGAGCATTACT
TCGAAGTACCTTTTTTTTTCTTTTTTCTTCGACGCGTTTCATGTTTTTTT
TTTGAAACGCCTACCCTTTGCGTACCACCGCCGCTGTTCTGTCGGGTGGA
GATTGTCCCCAGTCCGTCGAGCGGGGGTGAAGGGTTTACTCTGAAGGACA
TCCCTGTCGCCGACCCTCAACGGACACCGCGAAATACTCATTATCTAAAA
CGTCCGACACTTGGCGGACAACTCCTGACCTCACAGGATATCGCTAACCG
TCAATCGCCAACGCTTAACGACGACTCCAACAGTCAACGGACATATCTTG
TCTTGGAAGGATACCGCTCCCACTGCTGTAACCCTCAATGGACAAGGCTT
ACACTTAGCTGACAACGCTCTTTTGTCATCCACGGACAACTCCAACCCGC
AACGGAAAACCTCTCTCCTGAACACAGCTGCTCTCGAAGCGGAAGCTCCT
GAAGCTGGTGAAGGGGAGGAAGGTGAGGGGGTGGGACGACCCTCGTATGC
CGACGATCAAGGGCCTGAGAAGACGCGGGTACACTGCGGAGATCCTCAAC
AAGTTCTGCGAGGACATCGGAGTGACGAGGTGAGGTTCCAAGGCAAGAGA
GAAGGTGGGGGGCAAGAAGAAAGATAAGGGGGGGAAGGGAGGAAGTTGAC
TGCTGTGTACTTCAATTATTTTAGCAATACGGAAGCCGGAGGAGCTGCCT
CTTGAGATGGTGATTTATTTTTTTGTGATTCAATCATTGAGTATGGTGGC
GTCGCTCTTCTATGCGCACTCCCGCTGCATGTTCGTTCGTTTGTTCCTCT
CCAGGAACGACAACCTCATCGAGGTGGAAAAGCTGGAACACTGGGCGAGG
TCGGGTCTCAATGTGTCCTCCCGGAGAGTAATGGGCGCGTTGTCACCCGT
CAAGGTGAGTTCACCCTCACGCACCTCAGCGAAACGAGTTAGAACACTTG
CAGCGCGTCTGCTCTGACCCTACGGGATCACGGGCGACCCTGCCAGTGTA
CTTCGCAGGGACGCGCAGGAGCTTCAATGATACCCATGTTTGATCTTGCT
CTTCCCTCCGCCCTCCGAGTCCTCGTTTTCTTGGCCGTGGTCATAATTAT
TCTGGCCTCTGGTGAGAACCCAGCCAAGTAACCTTTTAGTAGAATCCTTG
GGCCTCACAGGTCGAACATTTTTGGCCGAACAATTTTAGGAAGCAGTGTT
GCGTCGGAACTGCCCTGCATCACCTAATCCCTGACCCTTTCCTTTGTCCA
CGAACCGAACAATTTTAGGAAGCAGCGTTACGTCGGAACTGCCCTGCATG
ACCGAATCCCTGACCCTTTACTTTGTCCACGAACCCCACATACCCTTGCT
TTGACAAGGTTACCCTAACTAACCTCGAGGAGACGAGAGAGGTGGAGGCA
TTAGATGTTCCGTTTGCCCCGGAAGCGGGATCGCACAAGATTCGCCTGAC
CAAGACGTTGTACATCGATGCCTCGGACTTTAGAAGAGAAGACTCGAAGG
ACTACTTCGGTCTCGCCCCGGGAAAGGTGAGCGGCTCATAACCTTTGGGG
GGGTCCACGTTGTTGGTGCGGGCGATAGGGGTGGCTTGCTTTGGGGCCTA
GGTTTGTGTTTGGTTGTTGGAATGCTCTTGGTGTGATGAAGGTGTTGATG
ACATCGTTGTTAGGTGGTGGTTGCTGGTTCAAACCAGTTCTTCGAGCGCG
GGCCCCAAAGCAGTGCGACCGGTCTGATTATACTGTCTAATTCTGTGTGG
TTTTCTATTTTCAAGCTGAGTACAATGCCTAGTTTGCTGCTCCTCACAAC
CTACTTAACCCTTTGCACAACGGCATGCCAAAATGACTGGAAACCATGTG
TACGTACAGTATTCCATTGAGATCGGTACACAGCATGCCGCAGGTGGGCT
CACGAAGCGCGAACATCAACCCGTCAATGTCTCAATGTCACACCTCAAAC
GCAACAGATGGTCGGACTGAAGTACTGCAGCGCGACCATGCGGTGTGACC
GGGTCGTGGACGGCGAAGGCGGCGCGAGCGCTCCCCCCGTCGAACTCATC
TGCAGCCTCGGAGAGCTTTCCCAGGAAAGTTCTGCGGCGCCGGCGGGGGA
CGTGGGGGCGGACGCGGCAACGAAAAGGCCCGGCGGCAGACCGAAGGGGA
ACATCTCGTGGGTTTCTGCGGAGGAGGCGGTGCGGGCGGAGGTGCGGCTG
TACAGCCACCTCTTTACGGTGGACTCTCCGGACGACCGATGGGAAGAGCA
GGTGTGTGTGTTGGTGTGTTGTGGTCGTCGGTGGTGGTGGTTGTTCTCAC
ATTAGCTCATCGCCCAGATCTAGCCGGTGGCCTCACTAGTGCCGAGCCCT
GGGGAGATTCGAAAATACACGAAAGAGTGAAAATGAGGGTGCTTCGTGTA
CAACAAGCCGAACAAACCACGTTTCTCATACTTCGCAGTGGGTGGTGTGC
AATAAGCTGACCCAACACTTCTACCGCAGATTATGTCCAGTTTCCCTCCG
TCCCATAAATCACCGAAAGTGGCTGCAGACTTCAGCAGTCGCTGTCTGGA
ATGTTTGCTGCCTGCAACAACGAACAATAGGCACGGTGCAGTAGTCGGAA
AACAGAAGAGAGGAAACGGATCACGATGATGTTTCTTGAGTGTTGATCGA
ATCACGAGACCCGCAGGCAAAGCAATTCAAATGCATCAACCGAACCATGG
CTCACACTTACGGACGTTGACAATCCGAATCTTTGCCGAGGCGTGTTCAA
AGGATACAATCAGATCACGCCATTTATACAAGTACTGCGAAGAAGTCCTT
CCATGATATTTGGCGCAGCTCAGGCACTTCTGTCGCGTTTCTCTTCTCTT
GAAAAAAATTACAGGGGATGTTATCCCACGAGTTTTTCTCCCTAACACGA
CCGAGAACTGAAAAAAAGCTTGTGGGGGTCGTGGCGTATGTCGTCGAGGA
CGGTCTCGATGCCGTGCTGTCCTTACGCTGGTGGTGTTGCCCATGGTCAC
CCAAATCTCATGGCGTCTACTTCTGTGGTGACTTTGCCCGAGGCCACCCT
CAGTACCACACTCTCGTACCGCTTCGCGGCTGGCGTTGCCCTTGGCCAGC
CTCAGCACCACCACTCACAACACACAAGCTCTCGTTGCTGTTCCTTTTTA
CGTTTCAGCCGGCCCCCCTTAGCTCCTCTCCACCTTTGAGACACTAGTCT
TGGAAAAAAATAACGCTCAGGGTGAGGTCGACCACGCTCCTCCTTGCCGA
GTGCCGCTCGTCTCCTTGCGGCTTTGGCTTCGAATCCGGCGACTGGACGG
CATTTTGTTTCTTCGTGTCCCAGACCGTGCCGTACCATATTTCGCCTGCG
GCGTCGCCTGGTTCCTCTCACGAATAGTTTTTTTATGCTCGTCGCTGTAT
CCAAAAAAGAGGCCCGCGAATCCGCACACTCGCACCCGTCCCACCAAAAT
CGACCCAACTCTACCGCCATGCCAGTGGTCATTCCACCACGGGCCCAGCA
GCAAGGAGGTATGACTCCCTTGAGGGTGACTAGCCCTACACCCCCCAGAA
AGACACTCCTCGCCGATCTGGGGCATGCCGACGGAAGACCTTGCCGAGGA
AGCGAGGGCTACAACATTTTTATGTGCGTGTGTCCACCGGGGCATGCCGA
TTTGTTGTGTATCTATCACGGTGGTCATTGTGCAACCGTGATCTGGCAGG
TGCTTGGACGTGTTTTATTCGTGGTGTATGCCTGGTAATCATGCGCGTGT
GCAGCACGCAGTGGGCCTTTACAAGGAACTGAGTTGAATTTAGCTGAGGG
ATGTTTAAAACTTTTAAACTTTTGAAGTATTTTCCTTCTCTTCTTTTAGC
TGAGGGATGTTTAAAACTTTTAAACTTTGAAGTATTTTTTTCTTCTCTTC
TGAGAGGTCTGCTCTAAAGACATGCCCCCCTCAAGTGATCCTGTCGGGTT
TTCCACACTTGAAGGAAAACATGTGAGGGCTACATCTATGTGAAAGAGAC
TCTTCACCTGGAGTTGTCAGTTTACCACAACGGTAAGGTTATGTTCTGTG
CCGTGAAAGCAGCGCTGGATGCAGCTGTGTCACCAGTCACCCTCCTCTGC
CCCAGGTCTGCTCCGTCGCGAACGAGATGCGAAACAAATGGTATAAAGGC
TGAGGCGAGCAATACATGTAAATAAGCACGACCCCGCGCTGTCTACCCTC
TGTTGTGAATGGTGTTTTTTGTGTCTACGCCGTTGTGATTACAGATAAAC
CCCGAGTCTGAAGTAGTAGTGTCCGGGGCGGTGGTCGACCCCTCTGTGCT
GGAGAAGGAGCACTCCGCCGGAACGCCGCTTCAGGTGAGACGAATGCGAT
ACATCGCATGGAAGAGACGATGTTCGCATGCAGACGGGCTTTTCTTTAGT
CGAATAAGTGCGGCAGGAACCACTTGTTGGGTTCGAGTGTCAATGATCGA
CTACATGGATCTGCGTTGCTTGGAAACTACTTGAAATTGAGCATAGACGC
TAGAAGGACTGATCTTGGTATCTACGCATCTGGAACCCCCACTGATGTGT
TCCTGTTCTTTTTGGTCGTGGCCTGGCTTGCTCTTGCTGTCTGCGACGCA
ACCCGTCCAGCTGGAGCGTATCGGCTTCTTTGTGGTGGATAAGGACTCTA
CGCCGGAGCTGCTAGTGTTGAATCGAACGGTCACTCTTAAGGAGGCCACC
GGAAAGAGCGCCGTGCCGAAGGACAAAAGCCGCAAGGAGCTACAGGTGAC
GAACGCAACTACACGCCATTCAATTTCTAAAGTAAAGTTTAAGACAGTTT
TACGTTCAATTTTCAACAGCCCCAATTACCCAAGCCCAAGAGACGATAGA
ATTCCTCGGTAACAAAAGTCCCACCCAACTTACCGAGCACTTTCGGCAAA
CCTTTTCAGCCAAAATGCCGACCGCCTCTTGGACTCTCACCGTTTTACTG
AGTTACAACGGCCAACTGCCGCGCGCGGTGCTTGCTTCCTACTCACGCGA
CAAGCCCGAAATGCGATCAAGTCAACCAACCCACAACACACTCAGTCGTG
TAGCGTCGTCTTACAGCCGTTTTTTGTGAAAGTCATAACGACGATGTGAT
CCGTTAAATAATATTTTCAATCTTGTTTCTGCAGGCTCGCCAGGCGGCGG
AAAAGGAGGCGAGGAAGCGCGTGCCCCCGCAAGAGATGTTCGTGGCCATG
ACGGACCTGTACTCGGCGTTCGACGACCAGGGAGTTCCAACGACGGACCA
GGCGGGAGAGCCGTTAAGCAAGAGCGCTATTAAGAAGCTCAAGAAGGAGT
GGGACAAGCAGAAGAAACTCTACGAGAAGTCGCAGGAGTAGATGACCGCG
GCTGCTTTGTGATGACAATGACGAAGATGCGGAATGGTGGTAATCCAGAC
TCGGGATCCCCTGTTGGCACTAGCTGGTCATATCATACCCAAAACAGTCG
AGATACGCTGCGGTGGCTGTGAGCACCGTAACACAGGGTTGGTCGCGAGG
GTTGTTTAACGCTTCGGAGACGGCGACGGGAGCAGGGGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig100:301213..313051-

>mRNA_P-littoralis_Contig100.80.1 ID=mRNA_P-littoralis_Contig100.80.1|Name=mRNA_P-littoralis_Contig100.80.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1860bp|location=Sequence derived from alignment at P-littoralis_Contig100:301213..313051- (Pylaiella littoralis U1_48)
ATGCACATGAACTTTCACCTCGCCTTCGAGAAGCTCTCCCTGGACACGCA
ACATATACCCGAGGACATGAGAGAAACCATTTTCCGCTACGACGACACAA
ATCCGGAGGCGGAGAGCCAAGAGTACATCGACTCTATCAGAGAGGACCTT
GAGTGGATGGGTTGGAAGCCAGCGCAGACGACATACTCCTCGGACTCTTT
CCAGCTGCTCTACGAATTGGCGATCAAGCTCATCGAGGGCGGGAAGGCGT
ACGTGTGCCACCAGACCAAGGATGATATCTTCAAGTGTCGAGAGATCGCC
AAGGCGAATGCGGCCAATCTCAACACGAACGCGGGGGACCCTTGCAGCCC
CTGGAGGAATAGGCCCATCCAGGAAAACCTGGATATTTTCGAAAAGATGC
GGACTGGTCAGTTGGACGAAGGTTCCGCCACCCTTCGGCTGAAGATGGAC
ATGACCTCGCCCAACCCCAACATGTGGGACCAGGTGGCGTATCGCATCCG
GTACATCCCCCACCCCCACGCTGGGGACAAGTGGTGCGTCTACCCCACCT
ACGACTACACGCACTGCCTGGTGGACAGCCTCGAAGACATCGACTATTCC
ATCTGCACCCTGGAGTTTGAGACACGACGAGAATCGTACTTCTGGCTGCT
GGAGGCCCTCGAGCTGTACCGACCAAAGGTTTACGAGTTTGCGAGGCTCA
ACATCACCCGCACGCTGCTCTCGAAGCGGAAGCTCCTGAAGCTGGTGAAG
GGGAGGAAGGTGAGGGGGTGGGACGACCCTCGTATGCCGACGATCAAGGG
CCTGAGAAGACGCGGGTACACTGCGGAGATCCTCAACAAGTTCTGCGAGG
ACATCGGAGTGACGAGGAACGACAACCTCATCGAGGTGGAAAAGCTGGAA
CACTGGGCGAGGTCGGGTCTCAATGTGTCCTCCCGGAGAGTAATGGGCGC
GTTGTCACCCGTCAAGGTTACCCTAACTAACCTCGAGGAGACGAGAGAGG
TGGAGGCATTAGATGTTCCGTTTGCCCCGGAAGCGGGATCGCACAAGATT
CGCCTGACCAAGACGTTGTACATCGATGCCTCGGACTTTAGAAGAGAAGA
CTCGAAGGACTACTTCGGTCTCGCCCCGGGAAAGATGGTCGGACTGAAGT
ACTGCAGCGCGACCATGCGGTGTGACCGGGTCGTGGACGGCGAAGGCGGC
GCGAGCGCTCCCCCCGTCGAACTCATCTGCAGCCTCGGAGAGCTTTCCCA
GGAAAGTTCTGCGGCGCCGGCGGGGGACGTGGGGGCGGACGCGGCAACGA
AAAGGCCCGGCGGCAGACCGAAGGGGAACATCTCGTGGGTTTCTGCGGAG
GAGGCGGTGCGGGCGGAGGTGCGGCTGTACAGCCACCTCTTTACGGTGGA
CTCTCCGGACGACCGATGGGAAGAGCAGATAAACCCCGAGTCTGAAGTAG
TAGTGTCCGGGGCGGTGGTCGACCCCTCTGTGCTGGAGAAGGAGCACTCC
GCCGGAACGCCGCTTCAGCTGGAGCGTATCGGCTTCTTTGTGGTGGATAA
GGACTCTACGCCGGAGCTGCTAGTGTTGAATCGAACGGTCACTCTTAAGG
AGGCCACCGGAAAGAGCGCCGTGCCGAAGGACAAAAGCCGCAAGGAGCTA
CAGGCTCGCCAGGCGGCGGAAAAGGAGGCGAGGAAGCGCGTGCCCCCGCA
AGAGATGTTCGTGGCCATGACGGACCTGTACTCGGCGTTCGACGACCAGG
GAGTTCCAACGACGGACCAGGCGGGAGAGCCGTTAAGCAAGAGCGCTATT
AAGAAGCTCAAGAAGGAGTGGGACAAGCAGAAGAAACTCTACGAGAAGTC
GCAGGAGTAG
back to top