mRNA_P-littoralis_Contig100.8.1 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-littoralis_Contig100.8.1 vs. uniprot
Match: A0A6H5L0J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE) HSP 1 Score: 104 bits (259), Expect = 1.660e-25 Identity = 51/84 (60.71%), Postives = 61/84 (72.62%), Query Frame = 1 Query: 85 EFVHDKQYLHFASVSRGWKNAWGKGRPTVTAAVTADTSISQLLFSIECGLGRSAHACMAMARYGRLDLLQFAQENGFRWDSLTC 336 EFV D QYL FASVSRGW++ WGK RPTVT A+TADTS+ QL S ECGL R+A C +A GRLDLL+ A+ G +W+ TC Sbjct: 15 EFVDDNQYLFFASVSRGWRDVWGK-RPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMGCQWNENTC 97
BLAST of mRNA_P-littoralis_Contig100.8.1 vs. uniprot
Match: D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI) HSP 1 Score: 105 bits (261), Expect = 8.280e-25 Identity = 52/84 (61.90%), Postives = 61/84 (72.62%), Query Frame = 1 Query: 85 EFVHDKQYLHFASVSRGWKNAWGKGRPTVTAAVTADTSISQLLFSIECGLGRSAHACMAMARYGRLDLLQFAQENGFRWDSLTC 336 EFV D QYL FASVSRGW++ WGK RPTVT A+TADTS+SQL S ECGL R+A C +A GRLDLL+ A+ G W+ TC Sbjct: 17 EFVDDNQYLFFASVSRGWRDVWGK-RPTVTKALTADTSVSQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMGCPWNENTC 99
BLAST of mRNA_P-littoralis_Contig100.8.1 vs. uniprot
Match: D8LDD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDD9_ECTSI) HSP 1 Score: 103 bits (256), Expect = 1.690e-24 Identity = 51/85 (60.00%), Postives = 61/85 (71.76%), Query Frame = 1 Query: 85 EFVHDKQYLHFASVSRGWKNAWGKGRPTVTAAVTADTSISQLLFSIECGLGRSAHA-CMAMARYGRLDLLQFAQENGFRWDSLTC 336 EFVHD Q+L FASVSR W+ AW +GRPT T A+T DTS SQL S++CGL A C A+A GRLDLL+ A+ GFRWD +TC Sbjct: 17 EFVHDDQFLFFASVSRAWRGAW-RGRPTSTRAITPDTSPSQLRHSVDCGLSPGGTAVCTAIASLGRLDLLRAARALGFRWDKMTC 100
BLAST of mRNA_P-littoralis_Contig100.8.1 vs. uniprot
Match: A0A6H5L0K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K8_9PHAE) HSP 1 Score: 102 bits (255), Expect = 1.930e-24 Identity = 51/84 (60.71%), Postives = 60/84 (71.43%), Query Frame = 1 Query: 85 EFVHDKQYLHFASVSRGWKNAWGKGRPTVTAAVTADTSISQLLFSIECGLGRSAHACMAMARYGRLDLLQFAQENGFRWDSLTC 336 EFV D Q+L FASVSRGW++ WGK RPTVT A+TADTS+ QL S ECGL R+A C +A GRLDLLQ A+ G W+ TC Sbjct: 33 EFVDDNQHLFFASVSRGWRDVWGK-RPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLQRARAMGCPWNENTC 115
BLAST of mRNA_P-littoralis_Contig100.8.1 vs. uniprot
Match: D8LGC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGC4_ECTSI) HSP 1 Score: 72.0 bits (175), Expect = 2.030e-12 Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 1 Query: 85 EFVHDKQYLHFASVSRGWKNAWGKGRPTVTAAVTADTSISQLLFSIECGLGR-----SAHACMAMARYGRLDLLQFAQE 306 EFV DKQYL FA VS+ W++AWG GRPTVT+ T TS+SQL +S++CGL + + ++AR G + LL+ A + Sbjct: 3 EFVGDKQYLFFAPVSQDWRSAWG-GRPTVTSYATPYTSLSQLRWSLDCGLKKEKGVQNGRVLSSLARTGDVGLLEVAHK 80
BLAST of mRNA_P-littoralis_Contig100.8.1 vs. uniprot
Match: A0A6H5L0L3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L3_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 1.030e-10 Identity = 40/86 (46.51%), Postives = 49/86 (56.98%), Query Frame = 1 Query: 85 EFVHDKQYLHFASVSRGWKNAWGKGRPTVTAAVTADTSISQLLFSIECGLG---RSAHACMAMARYGRLDLLQFAQENGFRWDSLT 333 EFV D QYL VS+ ++ AWG R TVT V ADTS+ QL ++ L R C A AR+GRLDLL+ AQE+ W T Sbjct: 6 EFVQD-QYLFIGPVSKDFRRAWGP-RATVTRPVVADTSVKQLRCCLKLDLPLRIRRTSICNAAARFGRLDLLELAQESACGWTPAT 89 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig100.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig100.8.1 >prot_P-littoralis_Contig100.8.1 ID=prot_P-littoralis_Contig100.8.1|Name=mRNA_P-littoralis_Contig100.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=112bp TVYRFLCEKVGAWKILWQLAPTSPRTWQEFVHDKQYLHFASVSRGWKNAWback to top mRNA from alignment at P-littoralis_Contig100:28926..29261+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig100.8.1 ID=mRNA_P-littoralis_Contig100.8.1|Name=mRNA_P-littoralis_Contig100.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig100:28926..29261+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig100:28926..29261+ >mRNA_P-littoralis_Contig100.8.1 ID=mRNA_P-littoralis_Contig100.8.1|Name=mRNA_P-littoralis_Contig100.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig100:28926..29261+ (Pylaiella littoralis U1_48)back to top |