|
|
Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 2937 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Cds size | 2151 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789339.00865-UTR-P-littoralis_Contig100:285780..286438 | 1680789339.00865-UTR-P-littoralis_Contig100:285780..286438 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig100 285781..286438 - |
| 1680789339.0371459-UTR-P-littoralis_Contig100:289283..289411 | 1680789339.0371459-UTR-P-littoralis_Contig100:289283..289411 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig100 289284..289411 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789339.0202153-CDS-P-littoralis_Contig100:286438..286491 | 1680789339.0202153-CDS-P-littoralis_Contig100:286438..286491 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig100 286439..286491 - |
| 1680789339.0290358-CDS-P-littoralis_Contig100:287185..289283 | 1680789339.0290358-CDS-P-littoralis_Contig100:287185..289283 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig100 287186..289283 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig100.76.2 >prot_P-littoralis_Contig100.76.2 ID=prot_P-littoralis_Contig100.76.2|Name=mRNA_P-littoralis_Contig100.76.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=717bp
MPTTWRCNRVGCTKQPSYGVAGTTAEFCSGHAKDGTVGGRTKDGTVGGRN
KKCTHLGCTKRPSYGVAGTTTPKFCPAHSKDGMVDVRSNKQCTHRGCTKR
PSYGVAGTRTTEFCSGHVEDGMVDVRSKKCTHSGCTKQPTYGVAGTATAE
FCSGHAMDRMVDVVNKKCTHRGCTKRPSYGMAGTTTAEFCSGHAKDGMVD
VVSNRCTHRGCIKWRRYGVAGTTNAEFCFGHAKEGMVNVVSKKCTHRGCT
KGPSYGVAGTRTAEFCSEHAQDGMVDVITKKCTHRGCSKKPNFGVAGTRT
AEFCSGHAKDGMVDVRSKKCTHSGCTKRPSFGVAGTTTAEFCSGHAKDGM
VDVVSKTCTHPGCTKWPSYGVAGTRTAEFCSGHAKDCMVDVRSKKCAHRG
CTKRPSYGVAGTRTAEFCSGHAKDGMVNVVSKKFTHRGCTTKPRYGVTGT
TMAEFCSGHAKGGMVDVRSKTCTHRGCTKVPSYGVAGTRTTEVCSGHAKD
GRVDVVSKKCTHRGCTKLPSYGVAGTTRTVCAQHAERGVVYSSNSKVVSG
VRGRSGGTRESGVEGRDGGTVRRACAAGKRKDRSPSPTHTGKFVGTNRTD
PKRSRQAPFHTTVNPAPIKRSIGQRRPQVEDGWISEPDDGAVKTEVGVSS
KTISRRALPVEVDAAVRATPVEDGSCVAPESAVKTELRIAFPSKNAAAEG
QPNRKGGKNGTKETRT* back to topmRNA from alignment at P-littoralis_Contig100:285781..289411- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig100.76.2 ID=mRNA_P-littoralis_Contig100.76.2|Name=mRNA_P-littoralis_Contig100.76.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3631bp|location=Sequence derived from alignment at P-littoralis_Contig100:285781..289411- (Pylaiella littoralis U1_48)
TGAAGAGAGTTGGGAGGTGGGGGGACAGACGGGACAAGCAGACAAGCAGA
CGAGCAGCAGGGTGTACTCCTTATCCCAGCAGGACTCTCCGACAGATCGA
GCCTATTGTCGATTTTGTTACAGGCAGGATGCCGACTACATGGAGGTGCA
ACCGTGTTGGCTGCACCAAGCAGCCGAGCTATGGTGTGGCAGGTACCACG
GCGGAGTTCTGCTCTGGACACGCCAAGGACGGCACGGTAGGCGGCCGCAC
CAAGGACGGCACGGTAGGCGGCCGCAACAAGAAGTGCACCCACCTTGGCT
GCACCAAGCGGCCGAGCTATGGTGTGGCAGGTACCACTACGCCGAAGTTC
TGCCCTGCACACTCCAAGGATGGCATGGTGGACGTCCGTAGCAACAAACA
GTGCACCCACCGTGGCTGCACCAAGCGGCCGAGCTATGGTGTGGCTGGTA
CCAGGACGACGGAGTTCTGCTCTGGACACGTCGAGGACGGCATGGTGGAC
GTCCGCAGCAAGAAGTGCACTCACAGTGGTTGCACCAAGCAGCCGACCTA
TGGCGTGGCAGGTACCGCGACGGCGGAATTCTGCTCTGGACACGCTATGG
ACAGGATGGTGGACGTCGTCAACAAGAAGTGCACCCACCGTGGCTGCACC
AAGCGGCCGAGCTATGGTATGGCAGGTACCACCACGGCGGAGTTCTGCTC
TGGACACGCCAAGGACGGCATGGTGGACGTCGTCAGCAATAGGTGTACCC
ACCGTGGCTGCATTAAGTGGCGGAGGTATGGTGTGGCAGGTACCACCAAC
GCGGAGTTCTGTTTCGGACATGCGAAGGAGGGCATGGTGAACGTTGTCAG
CAAGAAGTGCACCCACCGTGGCTGCACCAAGGGCCCGAGCTATGGTGTGG
CAGGTACCAGGACGGCGGAGTTCTGCTCCGAACATGCGCAGGACGGCATG
GTGGACGTTATCACCAAGAAGTGTACCCACCGTGGCTGCAGCAAGAAGCC
GAACTTTGGTGTGGCAGGTACCAGGACGGCGGAGTTCTGCTCCGGACACG
CCAAGGACGGCATGGTGGACGTCCGCAGCAAGAAGTGCACCCACAGTGGT
TGCACCAAGCGGCCGAGCTTTGGCGTGGCAGGTACCACGACGGCGGAGTT
CTGCTCTGGACACGCCAAGGACGGCATGGTGGACGTTGTCAGCAAGACGT
GCACGCACCCTGGCTGCACCAAGTGGCCGAGCTATGGTGTGGCAGGTACC
AGGACGGCGGAGTTCTGCTCTGGACACGCCAAGGACTGCATGGTGGACGT
CCGCAGCAAGAAGTGCGCCCACCGTGGCTGCACCAAGCGGCCGAGCTATG
GTGTGGCAGGTACCAGGACGGCGGAGTTCTGCTCTGGACACGCCAAGGAC
GGCATGGTGAACGTTGTCAGCAAGAAGTTCACCCACCGTGGCTGCACCAC
GAAGCCGAGGTATGGTGTGACAGGTACCACCATGGCGGAATTCTGCTCTG
GACACGCCAAGGGTGGCATGGTGGACGTCCGCAGCAAGACGTGCACCCAC
CGCGGCTGCACCAAGGTGCCGAGCTATGGCGTGGCAGGTACCAGGACGAC
GGAGGTCTGCTCTGGGCACGCCAAGGACGGCAGGGTGGACGTTGTTAGCA
AGAAGTGCACTCACCGTGGCTGCACCAAGTTGCCGAGCTATGGCGTGGCC
GGTACCACCCGAACAGTCTGCGCGCAACACGCTGAAAGGGGCGTGGTGTA
TTCCTCCAATTCCAAGGTAGTATCTGGTGTCCGCGGTAGAAGTGGCGGCA
CACGCGAAAGTGGTGTTGAAGGGCGGGATGGGGGCACCGTGCGCCGTGCA
TGTGCCGCTGGAAAGAGGAAGGATCGCTCTCCTTCACCTACCCACACAGG
GAAATTCGTCGGCACAAACAGGACCGACCCCAAGCGAAGCCGGCAGGCGC
CCTTCCACACAACTGTGAATCCGGCCCCGATAAAAAGATCTATAGGTCAA
CGTCGTCCTCAAGTTGAAGACGGTTGGATATCGGAGCCAGACGACGGTGC
AGTGAAAACAGAAGTTGGGGTCTCTTCTAAGACAATCTCGAGGAGAGCTT
TACCAGTTGAAGTAGATGCAGCGGTACGGGCCACCCCCGTTGAGGATGGT
TCGTGTGTTGCACCAGAATCTGCGGTGAAGACGGAACTGAGGATCGCATT
CCCATCGAAAAATGCGGCCGCTGAGGGTGAGTTGTATAACATCCGTTACA
ACTCTTCGGTAGCCGGTTCCAACATTCCATCCCTGGTTTACCATAAACTT
TGCGTTACCTGTATTTTTGTTTTCATGTTCAACAGAATGGACATCGGGCA
CTTCGTTGCTTTTCCTGCGGCTGTGTTTCTTTGTGTACCAGTGGCCTCCA
CAGCCCTTGTAGGCACCGCGTATGCGATGAATCGGTGTAGAGGTTGTAGA
AGACCGACATGCGTGTGTGGCCTAGGACACCCTGAGGTGAAGTTTCGAAA
AAATAGTCCTGCTGGCGTTATATCATGCAGCTTGTCCATTGCTGTTTTTG
GCGGCCTTCTCGCGGAGCCCTCCTTTCGGGTTGCCGATTTTGCATATTTC
AGAGTATATTTCCTTTGACATCGCTCGCGCACCACTCTCAAGGCTGTCTG
TGCGATCTCGTGGTCTACAGTATTAATGCTGCTTAAACTCTCTGGCCGTC
TTGGTGAGCACCACACGTGCCGATGTTTCATAGCACCAATGACGAAATGG
AAAGCAGTGCATTTCCGGCGACCCTCCAACTGTACCTGGCAGCCACCGCC
GTGGCTTGAAGCTCCTGCCAAACATATTTCCGGCGACCCTCCAACTGTAC
CTGGCAGCCACTGCCGTGGCTTGAAGCTCCTGCCAAACATATTTTGTTTT
CGATGCGTTCCTTGAAACAGGTCAGCCCAATCGCAAGGGGGGCAAGAACG
GAACGAAAGAGACGCGGACGTAGCACGGTTTTGCCTTTTGGAGTGACGCA
CACCGCTACGGACACCTTTGCTGTTGTGGGCGGTGTTCGGCGATCGGCCG
TTCTGCCCGGTTGTCGTGCCAACGACATTCCTCAGCATTCGGCGTCTAGG
GATTTAGCCCTTGGTGTGCATTTGTGGCGCCACCAAATGCAACAGTCGAA
CTACTTTTGCCTCTATTTGAGCTTGCAGGAAGGGGAAAAACGTCCGGTAC
TACGCTGCTCGATTTCCTCTATTTGCGCTGTATATTTTACATAATGAGTA
TTGTTTTTGAAGCGTGGGTCTCCATATGGTTAGATACATGTACATCACTG
CTTTCGGAGTGTAACTCAGTTTGTGGATTTGGAGGGAGACAAGTCTACGT
AGACATTTGACGCCCACGAAGTTGTCTTCTGCAGTCTACGAAATTATAAG
GGGAAGACGCAGGCTGGGTAGCAAAGCATGCACCTCATTAACCGGTAAAG
GATAAAGGATGGAGGTTTTTCAAGAGCGAGCTGGGCTGTTTTCGACGGTT
GCCCGATCCCTTTCTGTTAGTCCCTCTTTTGGTTTTGCCTGGTCCGTAGG
TGTCGTGTTTTCGTTTTATTCTATTGCAACCCGATATTGTGAATCGGGAA
TGATATTTGCGTCATGATTGATGACAAGACA back to topCoding sequence (CDS) from alignment at P-littoralis_Contig100:285781..289411- >mRNA_P-littoralis_Contig100.76.2 ID=mRNA_P-littoralis_Contig100.76.2|Name=mRNA_P-littoralis_Contig100.76.2|organism=Pylaiella littoralis U1_48|type=CDS|length=2151bp|location=Sequence derived from alignment at P-littoralis_Contig100:285781..289411- (Pylaiella littoralis U1_48)
ATGCCGACTACATGGAGGTGCAACCGTGTTGGCTGCACCAAGCAGCCGAG
CTATGGTGTGGCAGGTACCACGGCGGAGTTCTGCTCTGGACACGCCAAGG
ACGGCACGGTAGGCGGCCGCACCAAGGACGGCACGGTAGGCGGCCGCAAC
AAGAAGTGCACCCACCTTGGCTGCACCAAGCGGCCGAGCTATGGTGTGGC
AGGTACCACTACGCCGAAGTTCTGCCCTGCACACTCCAAGGATGGCATGG
TGGACGTCCGTAGCAACAAACAGTGCACCCACCGTGGCTGCACCAAGCGG
CCGAGCTATGGTGTGGCTGGTACCAGGACGACGGAGTTCTGCTCTGGACA
CGTCGAGGACGGCATGGTGGACGTCCGCAGCAAGAAGTGCACTCACAGTG
GTTGCACCAAGCAGCCGACCTATGGCGTGGCAGGTACCGCGACGGCGGAA
TTCTGCTCTGGACACGCTATGGACAGGATGGTGGACGTCGTCAACAAGAA
GTGCACCCACCGTGGCTGCACCAAGCGGCCGAGCTATGGTATGGCAGGTA
CCACCACGGCGGAGTTCTGCTCTGGACACGCCAAGGACGGCATGGTGGAC
GTCGTCAGCAATAGGTGTACCCACCGTGGCTGCATTAAGTGGCGGAGGTA
TGGTGTGGCAGGTACCACCAACGCGGAGTTCTGTTTCGGACATGCGAAGG
AGGGCATGGTGAACGTTGTCAGCAAGAAGTGCACCCACCGTGGCTGCACC
AAGGGCCCGAGCTATGGTGTGGCAGGTACCAGGACGGCGGAGTTCTGCTC
CGAACATGCGCAGGACGGCATGGTGGACGTTATCACCAAGAAGTGTACCC
ACCGTGGCTGCAGCAAGAAGCCGAACTTTGGTGTGGCAGGTACCAGGACG
GCGGAGTTCTGCTCCGGACACGCCAAGGACGGCATGGTGGACGTCCGCAG
CAAGAAGTGCACCCACAGTGGTTGCACCAAGCGGCCGAGCTTTGGCGTGG
CAGGTACCACGACGGCGGAGTTCTGCTCTGGACACGCCAAGGACGGCATG
GTGGACGTTGTCAGCAAGACGTGCACGCACCCTGGCTGCACCAAGTGGCC
GAGCTATGGTGTGGCAGGTACCAGGACGGCGGAGTTCTGCTCTGGACACG
CCAAGGACTGCATGGTGGACGTCCGCAGCAAGAAGTGCGCCCACCGTGGC
TGCACCAAGCGGCCGAGCTATGGTGTGGCAGGTACCAGGACGGCGGAGTT
CTGCTCTGGACACGCCAAGGACGGCATGGTGAACGTTGTCAGCAAGAAGT
TCACCCACCGTGGCTGCACCACGAAGCCGAGGTATGGTGTGACAGGTACC
ACCATGGCGGAATTCTGCTCTGGACACGCCAAGGGTGGCATGGTGGACGT
CCGCAGCAAGACGTGCACCCACCGCGGCTGCACCAAGGTGCCGAGCTATG
GCGTGGCAGGTACCAGGACGACGGAGGTCTGCTCTGGGCACGCCAAGGAC
GGCAGGGTGGACGTTGTTAGCAAGAAGTGCACTCACCGTGGCTGCACCAA
GTTGCCGAGCTATGGCGTGGCCGGTACCACCCGAACAGTCTGCGCGCAAC
ACGCTGAAAGGGGCGTGGTGTATTCCTCCAATTCCAAGGTAGTATCTGGT
GTCCGCGGTAGAAGTGGCGGCACACGCGAAAGTGGTGTTGAAGGGCGGGA
TGGGGGCACCGTGCGCCGTGCATGTGCCGCTGGAAAGAGGAAGGATCGCT
CTCCTTCACCTACCCACACAGGGAAATTCGTCGGCACAAACAGGACCGAC
CCCAAGCGAAGCCGGCAGGCGCCCTTCCACACAACTGTGAATCCGGCCCC
GATAAAAAGATCTATAGGTCAACGTCGTCCTCAAGTTGAAGACGGTTGGA
TATCGGAGCCAGACGACGGTGCAGTGAAAACAGAAGTTGGGGTCTCTTCT
AAGACAATCTCGAGGAGAGCTTTACCAGTTGAAGTAGATGCAGCGGTACG
GGCCACCCCCGTTGAGGATGGTTCGTGTGTTGCACCAGAATCTGCGGTGA
AGACGGAACTGAGGATCGCATTCCCATCGAAAAATGCGGCCGCTGAGGGT
CAGCCCAATCGCAAGGGGGGCAAGAACGGAACGAAAGAGACGCGGACGTA
G back to top
|