mRNA_P-littoralis_Contig100.67.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig100.67.1
Unique NamemRNA_P-littoralis_Contig100.67.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig100.67.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig100contigP-littoralis_Contig100:266042..269956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3236
Hectar predicted targeting categoryother localisation
Exons2
Cds size2583
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789338.945813-UTR-P-littoralis_Contig100:266041..2665961680789338.945813-UTR-P-littoralis_Contig100:266041..266596Pylaiella littoralis U1_48UTRP-littoralis_Contig100 266042..266596 -
1680789338.9781916-UTR-P-littoralis_Contig100:269858..2699561680789338.9781916-UTR-P-littoralis_Contig100:269858..269956Pylaiella littoralis U1_48UTRP-littoralis_Contig100 269859..269956 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789338.9594371-CDS-P-littoralis_Contig100:266596..2666491680789338.9594371-CDS-P-littoralis_Contig100:266596..266649Pylaiella littoralis U1_48CDSP-littoralis_Contig100 266597..266649 -
1680789338.9700224-CDS-P-littoralis_Contig100:267328..2698581680789338.9700224-CDS-P-littoralis_Contig100:267328..269858Pylaiella littoralis U1_48CDSP-littoralis_Contig100 267329..269858 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig100.67.1prot_P-littoralis_Contig100.67.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig100 266597..269858 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig100.67.1

>prot_P-littoralis_Contig100.67.1 ID=prot_P-littoralis_Contig100.67.1|Name=mRNA_P-littoralis_Contig100.67.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=861bp
MPTTWRCNRVGWAKSLSYGVAGTTTAESCSGHAKDGTVNVRSKKCTHRGC
TKQPTYGVAGTTTADFCSGHAEDGMVDVIIKKCTHRGCTKRPSYGVAGST
TAESCSGHAKDGMVDVRSKTCTHRGCTKQPSYGVAGTTTAELCSGHAKDG
MVDVRSKRCTHRGCTKRPSYGVAGSKTAEFCSGHAKDGMVDVARKKCAHR
GCTKRPSYGVAGSKTAELCSEHAKDGMVDVVSKKCTHGGCTKRPSFGVAG
TTTAEFCSGHAKDGTVDVRSKKCTHRGCTKQPSYGVADSKTAEFCSGHAK
DGMVDVVRKKCTHRGCTKWPSYGVAGTTTAEFCSGHAKDGTVNVRSKKCT
HRGCTKGPSYGVAGTRTADFCSGHAEDGMVDLVRKKCTHRGCTKRPSYGV
AGTRTAEFCSGHAKDGMVDVVRKNCTHRGCTKRPSYGVAGTTKAELCSGH
AKDGMVDVVRKKCTHRGCTKRPSFGVAGTTTADFCSGHAKDGMADVVRKR
CTHRGCTKRPSYGVVGTTTADFCSGHAEDGTVNVVSKKCTHRGCTKGPSY
GVAGTTTAEFCSGHAKDGMVDVVRKKCTHRGCTKRPSYGVAGTTTADFCS
GHAKDGMVDVRSKKCTHRGCTKEPSYGVAGTTTAELCSGHAKGGMVNVVS
KNCTHGDCTKRPTCGVVGGTLTACALHAEKGMAHSSVFKEVSGVRGRSCG
TRGGGVIERDGGTVRRAGATEKRKDRSPPSTQTGTFAGTNRANTKRSRQV
PAHTSLTPAPIIKNVVDQCCSPVEDGGISELDDAAVKTEVGVSSKTIPRK
ALPVEAVPAARATALEYGSCVEPESAVKTEVRIAFPSKNAAAEGQLDRRG
GKSRTRETRK*
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mRNA from alignment at P-littoralis_Contig100:266042..269956-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig100.67.1 ID=mRNA_P-littoralis_Contig100.67.1|Name=mRNA_P-littoralis_Contig100.67.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3915bp|location=Sequence derived from alignment at P-littoralis_Contig100:266042..269956- (Pylaiella littoralis U1_48)
CAGACTAACACACCAGCAAACAAGCAGGAAAGTGTACGCCTGAACCCAGG
AGGACTCCCCGACAGATCGAGTCTATTCTCGAATTTCTTACAGGAAGGAT
GCCGACTACATGGAGGTGCAACCGTGTCGGCTGGGCTAAGAGCCTGAGCT
ATGGTGTGGCAGGTACCACCACGGCGGAGTCCTGCTCTGGACACGCCAAG
GACGGCACGGTGAACGTTCGTAGCAAGAAGTGCACCCACCGTGGCTGCAC
CAAGCAGCCGACCTATGGTGTGGCAGGTACCACCACGGCTGATTTTTGCT
CTGGACACGCCGAGGACGGCATGGTGGACGTTATTATCAAGAAGTGCACC
CACCGTGGCTGCACCAAGCGGCCGAGCTATGGCGTGGCAGGTTCCACCAC
GGCGGAGTCCTGCTCTGGACACGCCAAGGACGGCATGGTGGACGTCCGCA
GCAAGACGTGTACCCACCGTGGCTGCACCAAGCAGCCGAGCTATGGGGTA
GCAGGCACCACCACGGCGGAGCTCTGCTCTGGACACGCCAAGGACGGCAT
GGTGGACGTCCGCAGCAAGAGGTGTACCCACCGTGGCTGCACCAAGCGGC
CGAGCTATGGGGTGGCAGGTTCCAAGACGGCGGAGTTCTGCTCTGGACAC
GCCAAGGACGGCATGGTGGACGTTGCCAGGAAGAAGTGCGCCCACCGTGG
CTGCACCAAGCGGCCGAGCTATGGGGTGGCAGGTTCCAAGACGGCGGAGC
TCTGCTCCGAACACGCCAAGGACGGCATGGTGGACGTTGTCAGCAAGAAG
TGCACCCACGGTGGCTGCACCAAGCGGCCGAGCTTTGGCGTGGCAGGCAC
CACCACGGCGGAGTTCTGCTCTGGACACGCCAAGGACGGCACGGTGGACG
TTCGTAGCAAGAAGTGCACCCACCGTGGCTGCACCAAGCAGCCGAGCTAT
GGCGTGGCAGATTCCAAGACGGCGGAGTTCTGCTCTGGACACGCCAAGGA
CGGCATGGTGGACGTTGTCAGGAAGAAGTGCACCCACCGTGGCTGCACCA
AGTGGCCGAGCTATGGTGTGGCAGGTACCACCACGGCGGAGTTCTGCTCT
GGACACGCCAAGGACGGCACGGTGAACGTTCGTAGCAAGAAGTGCACCCA
CCGTGGCTGCACCAAGGGACCGAGCTATGGTGTGGCAGGTACCAGGACGG
CGGATTTTTGCTCTGGACACGCCGAGGACGGCATGGTGGACCTTGTCAGG
AAGAAGTGCACCCACCGTGGCTGCACCAAGCGGCCGAGCTATGGCGTGGC
AGGTACCAGGACGGCTGAGTTCTGCTCTGGACACGCCAAGGACGGCATGG
TGGACGTTGTCAGGAAGAATTGCACTCACCGTGGATGCACCAAGCGGCCG
AGCTATGGCGTGGCAGGTACCACCAAGGCGGAGCTCTGCTCTGGACACGC
CAAGGACGGCATGGTGGACGTTGTCAGGAAGAAGTGCACCCACCGTGGCT
GCACCAAGCGGCCGAGCTTTGGCGTGGCAGGTACCACCACGGCGGATTTT
TGCTCTGGACACGCCAAGGACGGCATGGCGGACGTTGTCAGGAAGAGGTG
TACCCACCGTGGCTGCACTAAGCGGCCAAGCTATGGTGTGGTAGGTACCA
CCACGGCTGATTTTTGCTCTGGACACGCCGAGGACGGCACGGTGAACGTT
GTCAGCAAGAAGTGTACCCACCGTGGCTGCACCAAGGGACCGAGCTATGG
CGTGGCAGGTACCACCACGGCTGAGTTCTGCTCTGGACACGCCAAGGACG
GCATGGTGGACGTCGTCAGGAAGAAGTGCACTCACCGTGGATGCACCAAG
CGGCCGAGCTATGGCGTGGCAGGTACCACCACGGCGGATTTTTGCTCTGG
ACACGCCAAGGACGGCATGGTGGACGTCCGCAGCAAGAAGTGCACCCACC
GGGGCTGCACCAAGGAGCCGAGCTATGGTGTGGCAGGCACCACCACGGCG
GAGTTATGCTCTGGACACGCCAAGGGTGGCATGGTGAATGTTGTCAGCAA
GAATTGCACCCACGGGGACTGCACCAAGCGGCCGACATGTGGTGTGGTCG
GCGGCACCCTGACGGCCTGCGCGCTACATGCTGAAAAAGGCATGGCACAT
TCTTCCGTTTTCAAGGAAGTATCTGGTGTCCGCGGTAGAAGTTGCGGCAC
ACGCGGGGGTGGAGTTATAGAGCGGGACGGGGGAACCGTCCGCCGTGCTG
GTGCCACTGAAAAGAGGAAGGATCGCTCTCCTCCATCTACCCAGACAGGA
ACGTTTGCCGGCACGAATAGGGCAAACACCAAGCGAAGCCGTCAGGTGCC
CGCCCACACAAGTTTGACTCCTGCCCCGATAATAAAAAATGTCGTAGATC
AATGTTGTTCTCCAGTTGAAGACGGTGGGATATCGGAGCTAGACGACGCT
GCGGTGAAAACAGAAGTAGGGGTCTCTTCGAAGACGATCCCGAGGAAAGC
TTTACCAGTTGAAGCAGTACCGGCGGCACGCGCCACCGCCCTGGAGTATG
GTTCGTGTGTTGAACCAGAATCTGCGGTGAAGACGGAAGTGAGGATCGCA
TTCCCATCGAAAAATGCGGCCGCTGAGGGTGAGTTCGTAGAACATCCGTT
ACAGCTCTGCGGCAGTCGGTTCCAACATGTCATCTTTAGTTTCCCATAAA
CTTTGCGTCACCTGTGTTTTGGTTTTCATGTTACACAGAGTGGACGACGG
GCAGTTCGTTGCTTTTCCTGTTGTTGTTGTTTCTTTGTGTACCAGTGGCC
TCCGCAGCTCTGTGGGCACAACGCATGCGATGGATCGGTGCAATGAATGA
AGTTTATAGAAGACCGACAAGCGTGTGTAGCCTATGAGAGAATACCCTGG
GATGATGTTTTCGAAAATTAATTATTGTTGGCGTAACATCGTGCTGCTTG
TCTATTGCTTTTTCGCTGCCTTCTCGCGGAGCCCTTGTTGGGGTTGCCAA
TCCTGCATACTTCAAGGTATATTTCTTTCAACCGTGAAATATATCTCGCG
CACTTCTCTCAAGGCTGTCTGTGCTATCTCGTGGTCTGCGGTATTGATGC
TGCTAAAACTCTCTGGCCGTGTTAGTGGGCACAAAACGTGCTAATCTTTC
ATATCACCAATGTCCGCATCTACAGCAGTAGTGACAAAATCGAAAAACAT
AAAACAGTGCATTACAGACGGTCCTACAACTGTACCTGACGGCCACCGCC
GTGGCTTCAAGCTCCTGCTGAATGTTGTTGACTTTTTCGATGCGTTCCTT
GAAACAGGTCAGCTTGATCGCAGGGGGGGCAAGAGCCGAACAAGAGAGAC
GCGGAAGTAGCATGGCTTTGCACTTGGGAGTGGTGGACACCGCTACGGAC
GCATTTACTGCTGTGGGCGGTGTTTGGCGGCTGGTCGTTCTGCCCTGTTG
TCTTGCCAGCAGCATTTCATCCCACATGTGTACAATTTGTCGATACAGGT
TGGCGTCAGCGTTCGGCGTCCAGGGACTCAGGCTTCGGCGAGCGTTTGTG
GCGCCATTTACCGCAACAGTCGACCTCCTTTTGCCACTACTTGAGCTTGC
AGGGAGGGGGGAAACGTCTGACTCACTGTTTGAATTCCTCTAGTCGCACT
GATTAATTTCCCATGATGAGTATTGGTTTTGTCTGGTTCGTAGGTGTCTT
GTTTGCATATTATACTATTCTGACCCGCTAGGTGTGAACCGGGAATGACA
CTTGCTTCATGATTGGTGACAAGTACGTAATCACACCCCTGGTTGTGGCG
AGAGTGTGCCTCGCCGATGGAAACCCGATGATGCACACACGCTGGCCCGT
TGGCCGTGCAGGGGTGATAAAATAGTCCATGGCACTTCACTCATATCATA
TAGTTTGTTTGTTTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig100:266042..269956-

>mRNA_P-littoralis_Contig100.67.1 ID=mRNA_P-littoralis_Contig100.67.1|Name=mRNA_P-littoralis_Contig100.67.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2583bp|location=Sequence derived from alignment at P-littoralis_Contig100:266042..269956- (Pylaiella littoralis U1_48)
ATGCCGACTACATGGAGGTGCAACCGTGTCGGCTGGGCTAAGAGCCTGAG
CTATGGTGTGGCAGGTACCACCACGGCGGAGTCCTGCTCTGGACACGCCA
AGGACGGCACGGTGAACGTTCGTAGCAAGAAGTGCACCCACCGTGGCTGC
ACCAAGCAGCCGACCTATGGTGTGGCAGGTACCACCACGGCTGATTTTTG
CTCTGGACACGCCGAGGACGGCATGGTGGACGTTATTATCAAGAAGTGCA
CCCACCGTGGCTGCACCAAGCGGCCGAGCTATGGCGTGGCAGGTTCCACC
ACGGCGGAGTCCTGCTCTGGACACGCCAAGGACGGCATGGTGGACGTCCG
CAGCAAGACGTGTACCCACCGTGGCTGCACCAAGCAGCCGAGCTATGGGG
TAGCAGGCACCACCACGGCGGAGCTCTGCTCTGGACACGCCAAGGACGGC
ATGGTGGACGTCCGCAGCAAGAGGTGTACCCACCGTGGCTGCACCAAGCG
GCCGAGCTATGGGGTGGCAGGTTCCAAGACGGCGGAGTTCTGCTCTGGAC
ACGCCAAGGACGGCATGGTGGACGTTGCCAGGAAGAAGTGCGCCCACCGT
GGCTGCACCAAGCGGCCGAGCTATGGGGTGGCAGGTTCCAAGACGGCGGA
GCTCTGCTCCGAACACGCCAAGGACGGCATGGTGGACGTTGTCAGCAAGA
AGTGCACCCACGGTGGCTGCACCAAGCGGCCGAGCTTTGGCGTGGCAGGC
ACCACCACGGCGGAGTTCTGCTCTGGACACGCCAAGGACGGCACGGTGGA
CGTTCGTAGCAAGAAGTGCACCCACCGTGGCTGCACCAAGCAGCCGAGCT
ATGGCGTGGCAGATTCCAAGACGGCGGAGTTCTGCTCTGGACACGCCAAG
GACGGCATGGTGGACGTTGTCAGGAAGAAGTGCACCCACCGTGGCTGCAC
CAAGTGGCCGAGCTATGGTGTGGCAGGTACCACCACGGCGGAGTTCTGCT
CTGGACACGCCAAGGACGGCACGGTGAACGTTCGTAGCAAGAAGTGCACC
CACCGTGGCTGCACCAAGGGACCGAGCTATGGTGTGGCAGGTACCAGGAC
GGCGGATTTTTGCTCTGGACACGCCGAGGACGGCATGGTGGACCTTGTCA
GGAAGAAGTGCACCCACCGTGGCTGCACCAAGCGGCCGAGCTATGGCGTG
GCAGGTACCAGGACGGCTGAGTTCTGCTCTGGACACGCCAAGGACGGCAT
GGTGGACGTTGTCAGGAAGAATTGCACTCACCGTGGATGCACCAAGCGGC
CGAGCTATGGCGTGGCAGGTACCACCAAGGCGGAGCTCTGCTCTGGACAC
GCCAAGGACGGCATGGTGGACGTTGTCAGGAAGAAGTGCACCCACCGTGG
CTGCACCAAGCGGCCGAGCTTTGGCGTGGCAGGTACCACCACGGCGGATT
TTTGCTCTGGACACGCCAAGGACGGCATGGCGGACGTTGTCAGGAAGAGG
TGTACCCACCGTGGCTGCACTAAGCGGCCAAGCTATGGTGTGGTAGGTAC
CACCACGGCTGATTTTTGCTCTGGACACGCCGAGGACGGCACGGTGAACG
TTGTCAGCAAGAAGTGTACCCACCGTGGCTGCACCAAGGGACCGAGCTAT
GGCGTGGCAGGTACCACCACGGCTGAGTTCTGCTCTGGACACGCCAAGGA
CGGCATGGTGGACGTCGTCAGGAAGAAGTGCACTCACCGTGGATGCACCA
AGCGGCCGAGCTATGGCGTGGCAGGTACCACCACGGCGGATTTTTGCTCT
GGACACGCCAAGGACGGCATGGTGGACGTCCGCAGCAAGAAGTGCACCCA
CCGGGGCTGCACCAAGGAGCCGAGCTATGGTGTGGCAGGCACCACCACGG
CGGAGTTATGCTCTGGACACGCCAAGGGTGGCATGGTGAATGTTGTCAGC
AAGAATTGCACCCACGGGGACTGCACCAAGCGGCCGACATGTGGTGTGGT
CGGCGGCACCCTGACGGCCTGCGCGCTACATGCTGAAAAAGGCATGGCAC
ATTCTTCCGTTTTCAAGGAAGTATCTGGTGTCCGCGGTAGAAGTTGCGGC
ACACGCGGGGGTGGAGTTATAGAGCGGGACGGGGGAACCGTCCGCCGTGC
TGGTGCCACTGAAAAGAGGAAGGATCGCTCTCCTCCATCTACCCAGACAG
GAACGTTTGCCGGCACGAATAGGGCAAACACCAAGCGAAGCCGTCAGGTG
CCCGCCCACACAAGTTTGACTCCTGCCCCGATAATAAAAAATGTCGTAGA
TCAATGTTGTTCTCCAGTTGAAGACGGTGGGATATCGGAGCTAGACGACG
CTGCGGTGAAAACAGAAGTAGGGGTCTCTTCGAAGACGATCCCGAGGAAA
GCTTTACCAGTTGAAGCAGTACCGGCGGCACGCGCCACCGCCCTGGAGTA
TGGTTCGTGTGTTGAACCAGAATCTGCGGTGAAGACGGAAGTGAGGATCG
CATTCCCATCGAAAAATGCGGCCGCTGAGGGTCAGCTTGATCGCAGGGGG
GGCAAGAGCCGAACAAGAGAGACGCGGAAGTAG
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