mRNA_P-littoralis_Contig100.53.155 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-littoralis_Contig100.53.155 vs. uniprot
Match: D7FJX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJX5_ECTSI) HSP 1 Score: 320 bits (820), Expect = 4.090e-93 Identity = 260/503 (51.69%), Postives = 296/503 (58.85%), Query Frame = 2 Query: 4295 KAALALSXXXXXXXXXXXXAQVSAWETKSLREELEGLRERSAELSSALETARARESAAAAEAREGVRGELESLREAVGVAEAGREEAEAGLARLKDKKKRDLQEVRRLNERMMQLQQERREEVSRLETAVEQLQRKAHGLEEAGADREEALAQALSERDDLRGQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDQAXXXXXXXXXXXXXXXXXXEYDGRANDPEEKEGTEGFQSDGGDGTGGDARREEREKEVSLLRNLVEKLQREVEGLKSDLEEASAGRAEAEDAKETSAAALIRANARIAELTAKSAQLTRARSAMVAQIHALEEQ----SSKQXXXXXXXXXXXXXXXGVSVVTE------DLSEATPPRNPSLGGXXXXXXXXXXXXXXXXXXXXXSFDLEDGGHSGYLDDDDEDKTQAKPGDHIHSLLIAFTSTPVGAAVAERLPGLVTWVHQLPPQTLWSAAMAYLGFIHLLVLYKAVTC 5773 ++ALALS AQV+AWE+KSLREELEGLRERS ELSS LE R+RE+AA AREGV ELE LR AVG AEAGRE+AE GLARLK+KKKRDLQEVRRLNERMM+LQQ RREEVS LE ++++L+ K LE A A E Q Q XXXXXXXXXXXXXXXXXX G RREEREKE+SLLR LVEKLQREVEGLKSDLEE S GR++A++AK SAAAL RANARIAELT+KSAQLTRARSAMVAQI+ALEEQ + KQ V + DLSE PP P + + DLEDGG GY D+D E K QAKPGDH+ SLLI+ S+PVGAA++ERLPGLVTW+HQ PPQTLW+AA+AYL +HLL YKA+TC Sbjct: 27 RSALALSETRGALSEAESAAQVAAWESKSLREELEGLRERSEELSSELEATRSREAAATRTAREGVGAELEGLRGAVGAAEAGREQAEEGLARLKEKKKRDLQEVRRLNERMMELQQARREEVSDLEGSLQELRAKTDELEHALAQEE------------------------------------------------------------QHQGXXXXXXXXXXXXXXXXXXXXXG-------------------------PRREEREKELSLLRKLVEKLQREVEGLKSDLEEESTGRSQAQNAKNVSAAALGRANARIAELTSKSAQLTRARSAMVAQINALEEQLKSAALKQAAAATAGGAAETNTTDSGSVADFSTPLRDLSEVPPPSQPPMSADPPMRQRQRHRLSGAGPSSG-NLDLEDGG--GYFDED-EHKAQAKPGDHVKSLLISCASSPVGAAISERLPGLVTWLHQQPPQTLWTAAIAYLALVHLLAGYKAITC 440
BLAST of mRNA_P-littoralis_Contig100.53.155 vs. uniprot
Match: A0A6H5L1J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1J2_9PHAE) HSP 1 Score: 345 bits (884), Expect = 6.130e-92 Identity = 389/841 (46.25%), Postives = 444/841 (52.79%), Query Frame = 2 Query: 3398 ELRAALEDTGREGAAGEAAAAGARAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSKQQELEEAAEAARAQAXXXXXX--------QALREGMAAALEQAEDVASELRHQVNAAESTIADMDAARASADEETAALRADLAAAIDNADRAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELVAETEAALAEALDAERGAGGERVALVEREVEDLRAQLS------------------KAALALSXXXXXXXXXXXXAQVSAWETKSLREELEGLRERSAELSSALETARARESAAAAEAREGVRGELESLREAVGVAEAGREEAEAGLARLKDKKKRDLQEVRRLNERMMQLQQERREEVSRLETAVEQLQRKAHGLEEAGADREEALAQALSERDDLRGQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDQAXXXXXXXXXXXXXXXXXXEYDGRANDPEEKEGTEGFQSDGGDGTGGDARREEREKEVSLLRNLVEKLQREVEGLKSDLEEASAGRAEAEDAKETSAAALIRANARIAELTAK-----------------------SAQLTRARSAMVAQIHALEEQSSKQXXXXXXXXXXXXXXXGVSVVTEDLSEATPPRNPSLGGXXXXXXXXXXXXXXXXXXXXXSFDLEDGGHSGYLDDDDEDKTQAKPGDHIHSLLIAFTSTPVGAAVAERLPGLVTWVHQLPPQTLWSAAMAYLGFIHLLVLYKAVTC 5773 ELRA LE+TGREG A AAGARAEA +Q L EA AA XXXXXX ALRE M ALEQAE+ +SELRHQ+NAAE+TIADMDA RA+A+EETAALRA+LAAA XXXXXXXXXXXXXXXXXX ELVAE EAAL AER G ERVA VEREVE LR +LS ++ALALS XXXXX AQV+AWE+KSLREELEGLRERS ELSS LE ARARE+AA AREGV E+E LR AVG AEAGRE+AE GLARLKDKKKRDLQEVRRLNERMM+LQQ RREEVS LE ++++L+ K L A LA+ALSE+D L+ QAA XXXXXXXXXXXXXXXXXXXXXXXXX + G A + + G EG +S+ GGD RR+EREKE+SLLR LVEKLQREVEGLKSDLEE S GR++AEDAK+ S AAL RANAR SA L +A +A V + A+E ++ G S DLSE PP P + + DLEDGG GY D+D E+K QAKPGDHI SLLI+ S+PVGAA++ERLPGLVTW+HQ PPQTLW+AA+AYL +HLL YK +TC Sbjct: 1079 ELRAVLEETGREGEA----AAGARAEAEELQGQLEGTRKELREVEEALSSQTSKTEDALARLSSMEQELALMEQALGEARGAAXXXXXXXXXXXXXTAAATSALREEMMLALEQAEEESSELRHQINAAEATIADMDATRAAANEETAALRAELAAAAXX------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXELSAAQEMLRRELVAEREAALG----AERREGAERVAAVEREVEGLRVKLSESEKEHAQNLAAAAAAHERSALALSETRGALXXXXXVAQVAAWESKSLREELEGLRERSEELSSELEAARAREAAATRTAREGVGAEIEGLRRAVGTAEAGREQAEEGLARLKDKKKRDLQEVRRLNERMMELQQARREEVSDLEGSLQELRAKTGELGHA-------LAKALSEKDHLQ-QAATAXXXXXXXXXXXXXXXXXXXXXXXXXPIPSEGTIPVPAGDPNPRPQEPRQEEQHQC----------GGAREEMVRVG-EGLRSEE---RGGDQRRDEREKELSLLRKLVEKLQREVEGLKSDLEEESTGRSQAEDAKDVSTAALGRANARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAALKQAAAATVGR--AVETNTTDSGSVA-----------GFSTPLRDLSEGPPPSQPPMSADPPMRQRQRHRLSGAGLSSG-NLDLEDGG--GYFDED-ENKAQAKPGDHIKSLLISCASSPVGAAISERLPGLVTWLHQQPPQTLWTAAIAYLALVHLLAGYKTITC 1794
BLAST of mRNA_P-littoralis_Contig100.53.155 vs. uniprot
Match: D7FJX4_ECTSI (Methyl-accepting transducer domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJX4_ECTSI) HSP 1 Score: 191 bits (484), Expect = 6.850e-45 Identity = 231/410 (56.34%), Postives = 257/410 (62.68%), Query Frame = 2 Query: 581 LDDAFGLDPTSDEFQAVKREMERLARVHASQVERKNKQVKKXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXIEMENQLSAADEALREEREGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQASLSEANQRLEQALARSTDSERISAELGLEAQRLRERLAAAVAEAGAGNPNSSNDGNKTAAGHLDTATAAEQPPRIEDVAGSDNDDPXXXXXXXXXXXXXXXXXXXXXXXAAASSPLEQETTTIDAATAAAMMMDDLKRDLERATSRLEGQASDLRREQDNTAELEGRLSAEQALSEELRAKAQALSSRAEGAERGEGEAMKAAATEARRAAELREAFEQAEGELLRLRGRVSESEEEEARAAELKGTLETTRDALDELRVTAGQAEATAE 1810 +DDAFGLDPTSDEFQAVKREMERL R HASQV K KQVK+ XXXXXXXXXXX P EME QLSA EAL EE+EGH XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A+LSEANQRLEQAL+RST+SERISAELGLEAQ+LR+RL+ A+ EA GNK Q P AG D XXXXXXXXXXXXXXXXXX A +D LKRDLE+A RL+ AS L +++ AEL+ L+AE+ +SEELR +QAL +RAEGAER EL RLRGR +E EEEE RAAELKGTLE+TRDALDELRV+AG+AEATAE Sbjct: 1 MDDAFGLDPTSDEFQAVKREMERLERAHASQVLSKEKQVKRLXXXXXXXXXXXEMAVNEMQPQLQKLVDLVKDSKAEAAEMEEQLSAVTEALHEEKEGHREDVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAALSEANQRLEQALSRSTESERISAELGLEAQQLRQRLSEALNEAAVA-------GNK-------------QAPDNASAAGDGTGDGDTGSAXXXXXXXXXXXXXXXXXXXA---------------------IDGLKRDLEQAARRLQDNASTLEEQREQCAELQTSLAAERTISEELREGSQALLARAEGAERXXXXXXXXXXXXXXXXXXXXXXXXXXXAELSRLRGRAAEWEEEERRAAELKGTLESTRDALDELRVSAGEAEATAE 369 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig100.53.155 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig100.53.155 >prot_P-littoralis_Contig100.53.155 ID=prot_P-littoralis_Contig100.53.155|Name=mRNA_P-littoralis_Contig100.53.155|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1892bp MWGLGAIRDGAAGLVKQGAGAVKQGVEAGAKLLENLDENFDGSELGSDYEback to top mRNA from alignment at P-littoralis_Contig100:195235..216776- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig100.53.155 ID=mRNA_P-littoralis_Contig100.53.155|Name=mRNA_P-littoralis_Contig100.53.155|organism=Pylaiella littoralis U1_48|type=mRNA|length=21542bp|location=Sequence derived from alignment at P-littoralis_Contig100:195235..216776- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig100:195235..216776- >mRNA_P-littoralis_Contig100.53.155 ID=mRNA_P-littoralis_Contig100.53.155|Name=mRNA_P-littoralis_Contig100.53.155|organism=Pylaiella littoralis U1_48|type=CDS|length=5676bp|location=Sequence derived from alignment at P-littoralis_Contig100:195235..216776- (Pylaiella littoralis U1_48)back to top |