Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Stop | 1 |
Start | 1 |
Model size | 1678 |
Hectar predicted targeting category | other localisation |
Exons | 4 |
Cds size | 969 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1680789338.8596327-UTR-P-littoralis_Contig100:187550..187953 | 1680789338.8596327-UTR-P-littoralis_Contig100:187550..187953 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig100 187551..187953 + |
1680789338.8702626-UTR-P-littoralis_Contig100:188776..188809 | 1680789338.8702626-UTR-P-littoralis_Contig100:188776..188809 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig100 188777..188809 + |
1680789338.9174364-UTR-P-littoralis_Contig100:190509..190782 | 1680789338.9174364-UTR-P-littoralis_Contig100:190509..190782 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig100 190510..190782 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1680789338.8802724-CDS-P-littoralis_Contig100:188809..189547 | 1680789338.8802724-CDS-P-littoralis_Contig100:188809..189547 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig100 188810..189547 + |
1680789338.8931863-CDS-P-littoralis_Contig100:189916..190126 | 1680789338.8931863-CDS-P-littoralis_Contig100:189916..190126 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig100 189917..190126 + |
1680789338.90407-CDS-P-littoralis_Contig100:190488..190509 | 1680789338.90407-CDS-P-littoralis_Contig100:190488..190509 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig100 190489..190509 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig100.47.1 >prot_P-littoralis_Contig100.47.1 ID=prot_P-littoralis_Contig100.47.1|Name=mRNA_P-littoralis_Contig100.47.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=323bp
MENSGGVKRRRSDDVAGQQTQKRTIVSGREMQVAEALSTFRTSFLHSSAA AESAPANTGSRRMRSLVSAAKRMKTASSAIPAAGVTVKRGRTGNTENPRA TKRGKQATPGTPLRERNLYEFFGLPSTACPAAGASPTAPAAAAAPGATRR GRRTGSRVSSLLAVAGAAAAPAAAPVGAVAAPAGATTTEVGREHGQGAAA AGVFPSVAVMSTGGAAVGVGPAAPAPTEAAAAVAGGEGEKENRGREHGDN GNDIGNGGGKARLSLESNISLDPSTAGSTDGEFPDLSPDRMPRTSSSTGG GGKRRRRQRDEPQDEQAMKVKG* back to topmRNA from alignment at P-littoralis_Contig100:187551..190782+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig100.47.1 ID=mRNA_P-littoralis_Contig100.47.1|Name=mRNA_P-littoralis_Contig100.47.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3232bp|location=Sequence derived from alignment at P-littoralis_Contig100:187551..190782+ (Pylaiella littoralis U1_48) GTGTCCGTTGGCCCTATGCCCTATAGGAAAGTGGCAAGATACCCTCATCA
TTTTTCAATATTCAATATTCAATACAGTAGCTCTGTCGTTTTGTCTAAAT
TTCGCCGCATTTTTTATCGACGCACCATCCTCTCCAGTCTTCAGCCCTCT
TCTCACTCCCGTCTCGCGCACGACTCTCCTTTCGCCGCTCTTGTTTGCTT
GCACCGCAGAAGAGCAATTTGGAGGATCCGCACGAGAAAGGAGCAACAGC
AGCACCGCTGAGACATACCGGAAGATATCTGCGACCCGCGTGACGGTGCG
GCACCTTCATCGCCGCGACGGTCGGAATCTGTGCGATCCATCCTGATCTG
GAGAGAGGGAGTGAAAGAGAGAGAGATATCGGGGAGAGAGGACAACACGC
GAGGTGAGCGAGAGATGGGCATGGTACAGTTGTCTCTCTCTCTAGAGAGG
TTGGATCCTGGGTTTGATGGTATCAGGCCCAGCGTGTCACTGCTCAGAGA
GAGGGGCGAGTTGCACGCGCTGCTGATGAGCCTCGCGCCGGCAAAGGTGT
CTGGCAGTCTGGTGCTACGGTATGAATCTCTCGGGCTGTACAAATATATC
TCGCATGTATCTGTCATCCAAGAGTAATGCAGTTCATCTGGCGTTCGGGT
ACTGCTGTGGATCGCTCGGGGCTTCGTTCACTTTTACTAGCCGGCGTGCT
CTGTTCACATGACTGAAGGGGCCCGCGTGGTGCACGCTCACCTCAATGCT
TTTCATTTTCTCTGTGGTCGTAGCCGCTGCCGTTTGTGGTCTATGCGGGA
CCGGCCCTGGCGTGCTGTGAAAATGGCGTACCCACACCCTTTGATCTGCG
TGCGAAAATCAGACCAAGGCCACAAACATTGCCCACCTCCCCTATCGATA
CAGGAGCGAGCTGCTGCTGTTGTAGCTGCAAGCAGCAGCTCAGTGCGCCC
GGTGCGTGTATTACCCTCGATCTTGCTTTCGTATCAGGCGCCTTTGTGCC
CCGGGTAAGCATTTTGCGCGCGCAAAAATTCAAAAGTCACCAAAGCAGCT
GGTTGGTGTGTGTTAGCCCCGCCCACCCGTATCCGACATCTTCTCCCAAG
GGGATGCCTTGGTCTCTTCAGGGAGAGATCTGGCATCTTCTGGTGCCACA
TGCATATATAACCTCCTCCACCCTCATCCATCTCCGTTCTGTTGCCCGCA
CCCCGCCCCAAATCGTATCGACACAGCGCGATATTTTAGGAACAGCACCA
GCAGCACCGATGGAGAACAGCGGAGGCGTCAAGCGCAGGCGGTCTGACGA
CGTGGCGGGCCAGCAGACGCAGAAGCGCACCATAGTGAGCGGAAGAGAGA
TGCAGGTCGCAGAGGCCCTCAGCACTTTCCGCACCTCCTTCCTCCATTCT
TCGGCGGCAGCGGAATCGGCACCCGCCAACACAGGGTCACGCCGGATGAG
GTCCTTGGTCTCAGCGGCCAAGAGGATGAAAACGGCTAGCAGCGCCATCC
CCGCGGCGGGTGTGACGGTGAAGCGGGGCCGCACGGGCAACACAGAGAAC
CCTCGAGCAACGAAGCGCGGGAAGCAGGCCACACCTGGCACGCCTCTACG
CGAGAGGAATTTGTACGAATTCTTTGGCCTGCCTTCAACCGCCTGCCCGG
CAGCTGGTGCTTCTCCGACGGCACCCGCAGCAGCGGCGGCACCTGGGGCC
ACCAGGCGGGGGCGACGGACGGGAAGCAGGGTGAGCTCCCTCCTTGCCGT
TGCCGGGGCAGCAGCAGCACCGGCAGCAGCACCAGTAGGAGCGGTAGCAG
CACCAGCAGGAGCGACCACCACCGAGGTTGGTCGAGAGCACGGGCAAGGC
GCTGCGGCCGCAGGCGTGTTCCCGTCAGTGGCGGTAATGTCAACAGGAGG
TGCGGCTGTGGGTGTGGGCCCCGCGGCACCAGCACCAACAGAGGCAGCTG
CAGCGGTGGCAGGCGGGGAAGGGGAGAAGGAGAACCGTGGGCGGGAGGTA
CGGCGTTTTCTTGTACAGCTAGTATCCAATGAATCCCCTTGGTTTTATTG
CGCGCCTTGTGTGCTTGTTCTGCTGCGGTCTTTATATCGGATAGCGGAAA
GGCATCGCTTTGTGTGTCCGCATCATAAAATCTTAGAGCGGTATTGCGGG
TACTGCTGTTGTGCGAGAGGTGGTACAGCAGTAGGTGCGATCGTGCGGAT
TTTCAGTTTCGTACGTCGTGCAGCCGATGTCCACCCGGGTATGGTAGAAG
CGCCCGCCGTCTTGCATCCACGACGTTACACGCACGCTAGCCTGGCAGAT
GAGTGACCGCTCTTACCGACACCGCCACCGCACCGTCCCCCCTCCACTCC
GCTCCTGTACCGCCAGCACGGCGACAACGGCAACGACATCGGCAACGGAG
GAGGCAAGGCGAGGCTGAGCCTCGAAAGTAACATCAGCCTGGACCCGTCG
ACCGCAGGCAGCACGGACGGAGAGTTCCCCGATCTATCTCCCGATCGAAT
GCCAAGAACGTCTTCTTCCACCGGCGGCGGCGGCAAGAGGAGGAGGAGGC
AGCGGGATGAGCCGCAGGATGAGCAGGTAGGCTTCTTCGGCGTTGTTGGG
GGTCGGGTCGACCTATTTGATAGACTGCTGTGTACAGCAGTACTTCGAGT
AGTAGATGACATCGGGCGGGAAATGCGGAATATTTTTCTCCTTGTAAAGT
AGTTCGTATGTTGCAGTGGAGTGAGTGCACTTGAGAGGGGGCCTAGCAAA
AGAGAATGCCAGGTTCCCCCAAGTGATCGCTCTCCGGAGGATTTTTTTTT
TCTGTCGGGTGTGATATGTCGTACCAGTTGTTAACAGCCCCGCATCCCTC
TCGTACCTCCACCACCCTCCTGCTAACAACTTGCCGCTCCTTTTTCTACA
ACACTCGTGCTCTGAACGGTTTGAACGCATCTTTGCAGGCCATGAAGGTC
AAGGGATAGCAAGACCATGATGAGGACGGTGGCATTGACGGCACCAGAGG
GGCGACTCAGCTTGCCTGTGTACTCGTATGCGTTGCATTGCGTTTGCCAC
GACAGCGGAGTGGTGATGATTGCGGTGTCGAACCCTTCGTTGCTGCAGCA
TGCTGTTCGCTTCGTAGGGGGGCGTACCAGGTAGAGCATTTGGGGGGTAC
GGTGATCGGCGTGGTGTCACCATGCCTGGCTCTCTCGGCTGTTTTGTTGC
TGGTTGTCGGGGATATGATGCGGGGGGTTGGG back to topCoding sequence (CDS) from alignment at P-littoralis_Contig100:187551..190782+ >mRNA_P-littoralis_Contig100.47.1 ID=mRNA_P-littoralis_Contig100.47.1|Name=mRNA_P-littoralis_Contig100.47.1|organism=Pylaiella littoralis U1_48|type=CDS|length=969bp|location=Sequence derived from alignment at P-littoralis_Contig100:187551..190782+ (Pylaiella littoralis U1_48) ATGGAGAACAGCGGAGGCGTCAAGCGCAGGCGGTCTGACGACGTGGCGGG CCAGCAGACGCAGAAGCGCACCATAGTGAGCGGAAGAGAGATGCAGGTCG CAGAGGCCCTCAGCACTTTCCGCACCTCCTTCCTCCATTCTTCGGCGGCA GCGGAATCGGCACCCGCCAACACAGGGTCACGCCGGATGAGGTCCTTGGT CTCAGCGGCCAAGAGGATGAAAACGGCTAGCAGCGCCATCCCCGCGGCGG GTGTGACGGTGAAGCGGGGCCGCACGGGCAACACAGAGAACCCTCGAGCA ACGAAGCGCGGGAAGCAGGCCACACCTGGCACGCCTCTACGCGAGAGGAA TTTGTACGAATTCTTTGGCCTGCCTTCAACCGCCTGCCCGGCAGCTGGTG CTTCTCCGACGGCACCCGCAGCAGCGGCGGCACCTGGGGCCACCAGGCGG GGGCGACGGACGGGAAGCAGGGTGAGCTCCCTCCTTGCCGTTGCCGGGGC AGCAGCAGCACCGGCAGCAGCACCAGTAGGAGCGGTAGCAGCACCAGCAG GAGCGACCACCACCGAGGTTGGTCGAGAGCACGGGCAAGGCGCTGCGGCC GCAGGCGTGTTCCCGTCAGTGGCGGTAATGTCAACAGGAGGTGCGGCTGT GGGTGTGGGCCCCGCGGCACCAGCACCAACAGAGGCAGCTGCAGCGGTGG CAGGCGGGGAAGGGGAGAAGGAGAACCGTGGGCGGGAGCACGGCGACAAC GGCAACGACATCGGCAACGGAGGAGGCAAGGCGAGGCTGAGCCTCGAAAG TAACATCAGCCTGGACCCGTCGACCGCAGGCAGCACGGACGGAGAGTTCC CCGATCTATCTCCCGATCGAATGCCAAGAACGTCTTCTTCCACCGGCGGC GGCGGCAAGAGGAGGAGGAGGCAGCGGGATGAGCCGCAGGATGAGCAGGC CATGAAGGTCAAGGGATAG back to top
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