Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 1 |
| Model size | 410 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Cds size | 378 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789339.1583874-UTR-P-littoralis_Contig100:572318..572348 | 1680789339.1583874-UTR-P-littoralis_Contig100:572318..572348 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig100 572319..572348 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789339.1701183-CDS-P-littoralis_Contig100:572348..572395 | 1680789339.1701183-CDS-P-littoralis_Contig100:572348..572395 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig100 572349..572395 + |
| 1680789339.1798468-CDS-P-littoralis_Contig100:572894..573057 | 1680789339.1798468-CDS-P-littoralis_Contig100:572894..573057 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig100 572895..573057 + |
| 1680789339.1887567-CDS-P-littoralis_Contig100:573211..573340 | 1680789339.1887567-CDS-P-littoralis_Contig100:573211..573340 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig100 573212..573340 + |
| 1680789339.2014859-CDS-P-littoralis_Contig100:574107..574146 | 1680789339.2014859-CDS-P-littoralis_Contig100:574107..574146 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig100 574108..574146 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig100.159.1 >prot_P-littoralis_Contig100.159.1 ID=prot_P-littoralis_Contig100.159.1|Name=mRNA_P-littoralis_Contig100.159.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=126bp
MLATTEVAVTFGAHRRRKRAGSSTAAVATTREGNGKRWKDRLRLRPQPIQ
PHGLEVQDSPEPESVSTPRQQGAIGARSAMAEPPVMMLVLLLIATAMVSV
QRLRSAGRRAATHHPGLGGGSGGGGG back to topmRNA from alignment at P-littoralis_Contig100:572319..574146+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig100.159.1 ID=mRNA_P-littoralis_Contig100.159.1|Name=mRNA_P-littoralis_Contig100.159.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1828bp|location=Sequence derived from alignment at P-littoralis_Contig100:572319..574146+ (Pylaiella littoralis U1_48)
CCGGTAGCCTCTGCTGGGTCAGCGCTGGTGATGCTCGCCACCACCGAGGT
CGCAGTGACCTTCGGAGCCCACCGCAGGTCAGGCGTGCGTTTCGTACGGG
ACGCGTCAATGGCTTGAGACATACTTTTTCGGAGACAGGGGGGGTTGACT
AAGATACTGGGGCATGACAGGCACGTCTTCAAGCCCAAAAATCACATACC
GGTAAACGAGTACCATACCCCCCTCCCCCCCCCGACCCCGACGAATGGTG
ATGTTGCAAGCGATGGTGGGTGTTGTAGTAAACATTTGACCTATGAGCGT
TGCCACAGCCGATTGCAGGGGGGCTGCTGCGTGGCGCATAAAGGGAGGTG
ATGCTTGCCACGTATGGGGGTGGCGGCACATGCATCAGTTGATGCATGGC
ATCTCGTACTACAGCCTTCCCCGCGATTCTTCTTCTGTTTTGTTTTTTTC
CAAAAACCTGTTGACCTTGCCCCCCCCCGCCCCAACGAATAAACCAATCC
GAAACAACGCACAAACACAACGCAACCCGACATGCCGCTGTACAACAATG
CAAATCCTTCATTTCGTATTTGACAGGAGGAAACGGGCGGGCAGCAGCAC
TGCTGCTGTTGCAACGACGAGGGAGGGCAACGGCAAGCGGTGGAAGGACC
GGCTCCGGTTGCGGCCCCAACCCATTCAGCCACATGGCCTCGAGGTCCAG
GACTCGCCGGAACCGGAGTCAGTTTCAACACCGCGACAGGTGTGTGCGTA
GTCGGGCAGTTCGTGCCTGTTCTGGGGGAACTGCAGATATTTCGACGAGC
CTGTGGTGCTTTCTTGTCTTATCTGATTTTTATTTTTGTGTAACTGTCTC
CTGCGCTGCTTTCGTTTCCGCGCGCGTTGCTCCACTTGTGCAGCAAGGAG
CGATCGGCGCTCGATCGGCGATGGCCGAACCGCCTGTGATGATGCTGGTG
CTGCTTCTCATCGCTACGGCGATGGTGTCCGTGCAACGCCTGAGAAGCGC
AGGCCGGAGGGCCGCGACCCACGTGAGATAAAATACCACTGCTGTATCGA
TTATATTATTCCCTCACATCGTGCGGGCGTGTATCACATGTATGATAGCA
TGGAATGGTGGGCGAGCAGCACCGCAGCACCCTGATGATGCTCGAGAGAC
TGTCGCGGGCTGTGTACGACATGAAGTGGAAGATTCTGCTGGACAACAGG
CGTTTGTGTTCTCTCTGTCACTCCTCTCTCTCTCTCTCTCTTTTCCCTCT
TTTGTGGGGGTAGGGTCAAAACACGACGCATCTGTACACCAAGGAATGTG
TTGCATATGCAAAAGTCATTTTTCGCATCGCGCCGCCGTATCTACCTGAT
GAGCCATTTCCATGTTTAAGTCAGTTTTGTTTTGTTGTTCACCGGAGCAG
ATTGCCGCTGCTGGCGCTGCTCCTCGCGTTGCCCGGCTGTATCTCAAGTC
GCCCGCCGCCATGGCCGTAGCCCCAGCGCCCACAGAATTCCGTGGAACAA
TCTCCTGAAAACAAAACGGGAGAGAGCGAACACACACGGTAGTTTCACGA
GCAATGATAAAAAATTCCGTTTTGGTCGTCGAGCTGTCAGCACAGGTAGC
CGGGCACAGCTCTCTTTTTGTCCGAAAACACCGCACCCTGTTCCCGCCGC
GCCTCGCCATCCTTTTTTACCATCCCCCACCAAAACCAGCTGGTATGTAC
ATTGAGACCACATTACAGCTTACCGGTATTTCCGTGTGCCACCCCGTCCT
GTCTTACTCATCTTCCGGATACACGTGGATTCGTCGCAGCATCCGGGCCT
CGGTGGTGGTAGTGGTGGTGGTGGCGGC back to topCoding sequence (CDS) from alignment at P-littoralis_Contig100:572319..574146+ >mRNA_P-littoralis_Contig100.159.1 ID=mRNA_P-littoralis_Contig100.159.1|Name=mRNA_P-littoralis_Contig100.159.1|organism=Pylaiella littoralis U1_48|type=CDS|length=378bp|location=Sequence derived from alignment at P-littoralis_Contig100:572319..574146+ (Pylaiella littoralis U1_48)
ATGCTCGCCACCACCGAGGTCGCAGTGACCTTCGGAGCCCACCGCAGGAG
GAAACGGGCGGGCAGCAGCACTGCTGCTGTTGCAACGACGAGGGAGGGCA
ACGGCAAGCGGTGGAAGGACCGGCTCCGGTTGCGGCCCCAACCCATTCAG
CCACATGGCCTCGAGGTCCAGGACTCGCCGGAACCGGAGTCAGTTTCAAC
ACCGCGACAGCAAGGAGCGATCGGCGCTCGATCGGCGATGGCCGAACCGC
CTGTGATGATGCTGGTGCTGCTTCTCATCGCTACGGCGATGGTGTCCGTG
CAACGCCTGAGAAGCGCAGGCCGGAGGGCCGCGACCCACCATCCGGGCCT
CGGTGGTGGTAGTGGTGGTGGTGGCGGC back to top
|