Homology
BLAST of mRNA_P-littoralis_Contig100.156.1 vs. uniprot
Match:
D7FGV7_ECTSI (Similar to PHD finger family protein, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV7_ECTSI)
HSP 1 Score: 109 bits (273), Expect = 3.050e-22
Identity = 55/130 (42.31%), Postives = 81/130 (62.31%), Query Frame = 1
Query: 4 ICCTQLPDVGQGIIPCGHVFCFYCIQKWSKNANVCPTCRLEFTKISKTMSLKDLTKEEAH-------REGNKNKKCTTKRKA----ARGKTPVEGVYVKVFRVRKKTQNLTPAQQAALPHPQAPGGFLHV 360
ICC +LP++ +G++ CGHVFCF CI +W+KN+++CP CR++ +I+KT+S D K + + G K K ++A +R K P G K RVR K+ +TPAQQ A PHPQA GG+++V
Sbjct: 178 ICCDKLPNLERGVLSCGHVFCFACIHQWTKNSSICPGCRVQIKRITKTLSPADEAKAKGETRKPVVSQRGMKKKPRKQLKRARHRDSRAKNPASGFVTKTVRVRPKSLKMTPAQQRAAPHPQARGGWMYV 307
BLAST of mRNA_P-littoralis_Contig100.156.1 vs. uniprot
Match:
A0A6H5K2A7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A7_9PHAE)
HSP 1 Score: 101 bits (252), Expect = 7.030e-20
Identity = 60/166 (36.14%), Postives = 83/166 (50.00%), Query Frame = 1
Query: 4 ICCTQLPDVGQGIIPCGHVFCFYCIQKWSKNANVCPTCRLEFTKISKTMSLKDLTK--------------------------EEAHR-----------------EGNKNKKCT----TKRKAARGKTPVEGVYVKVFRVRKKTQNLTPAQQAALPHPQAPGGFLHV 360
ICC +LPD+ +G++ CGHVFCF CI +W+KN+++CP CR++ +I+KT+S D K E A R G K K +R+ +R K P G K RVR K+ +TPAQQ A PHPQAPGG+++V
Sbjct: 82 ICCDKLPDLERGVLSCGHVFCFACIHQWTKNSSICPGCRVQIKRITKTLSPADEAKSKGETRKPVSLAVTRQRGWRSLFLPVERAFRLCLFARFLGPLFLVVSQRGMKKKVRKQLKRARRRDSRAKNPAAGFVTKTVRVRPKSLKMTPAQQRAAPHPQAPGGWMYV 247
BLAST of mRNA_P-littoralis_Contig100.156.1 vs. uniprot
Match:
A0A6H5L829_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L829_9PHAE)
HSP 1 Score: 83.2 bits (204), Expect = 6.110e-13
Identity = 47/123 (38.21%), Postives = 66/123 (53.66%), Query Frame = 1
Query: 1 CICCTQ-LPDVGQGIIPCGHVFCFYCIQKWSKNAN---VCPTCRLEFTKISKTMSLKDLTKEEAHREGNKNKKCTTKRKAARGKTPVEGVYVKVFRVRKKTQNLTPAQQAALPHPQAPGGFLH 357
CI C + LPD+ +GII CGH FCF CI WS + +CP+CR+ F KI KT+S KD+ KE+ E V+ ++VK RVRK ++ ++A HP A GG ++
Sbjct: 58 CIICQEALPDIERGIIACGHTFCFGCIHTWSSRSGDSVLCPSCRVPFNKIKKTLSPKDVEKEKLRNE-------------------VDKIFVKDIRVRKMSKKKKAIEEARTLHPDAAGGSMN 161
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig100.156.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 3.05e-22 / Id = 42.31 Expect = 7.03e-20 / Id = 36.14 Expect = 6.11e-13 / Id = 38.21 Sequence D7FGV7_ECTSI A0A6H5K2A7_9PHAE A0A6H5L829_9PHAE
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1
Start 1
Model size 2138
Hectar predicted targeting category other localisation
Exons 5
Cds size 1317
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789339.06323-UTR-P-littoralis_Contig100:557876..557927 1680789339.06323-UTR-P-littoralis_Contig100:557876..557927 Pylaiella littoralis U1_48 UTR P-littoralis_Contig100 557877..557927 +
1680789339.0778177-UTR-P-littoralis_Contig100:559419..559515 1680789339.0778177-UTR-P-littoralis_Contig100:559419..559515 Pylaiella littoralis U1_48 UTR P-littoralis_Contig100 559420..559515 +
1680789339.1312113-UTR-P-littoralis_Contig100:562793..563467 1680789339.1312113-UTR-P-littoralis_Contig100:562793..563467 Pylaiella littoralis U1_48 UTR P-littoralis_Contig100 562794..563467 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789339.0917697-CDS-P-littoralis_Contig100:559515..559557 1680789339.0917697-CDS-P-littoralis_Contig100:559515..559557 Pylaiella littoralis U1_48 CDS P-littoralis_Contig100 559516..559557 +
1680789339.100119-CDS-P-littoralis_Contig100:560702..560759 1680789339.100119-CDS-P-littoralis_Contig100:560702..560759 Pylaiella littoralis U1_48 CDS P-littoralis_Contig100 560703..560759 +
1680789339.109579-CDS-P-littoralis_Contig100:561046..561136 1680789339.109579-CDS-P-littoralis_Contig100:561046..561136 Pylaiella littoralis U1_48 CDS P-littoralis_Contig100 561047..561136 +
1680789339.120281-CDS-P-littoralis_Contig100:561665..562793 1680789339.120281-CDS-P-littoralis_Contig100:561665..562793 Pylaiella littoralis U1_48 CDS P-littoralis_Contig100 561666..562793 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig100.156.1
>prot_P-littoralis_Contig100.156.1 ID=prot_P-littoralis_Contig100.156.1|Name=mRNA_P-littoralis_Contig100.156.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=439bp
MSLKDLTKEEAHREGNKNKKCTTKRKAARGKTPVEGVYVKVFRVRKKTQN LTPAQQAALPHPQAPGGFLHVPGGPAAGVAAGVAAGAAAGAAADMGGYLA GGFTQLQEQRDQLHVEQAVTRAREEAAEEQSRARAARQQAVAARQQAVRA AELAAEDEAREARDRTAAAAAAAAEQEEQEQEEEEEEESRWSLGVNGWTR RRREAVVDADTSDDEVTPGTMMDADSAWFGPGTSVGWGQEHIQRAAAPSQ TVAAAAAVSQGSNTWVGVASTVGARTRDTYLGRFTASVEQAEREREQRRE EDRSRRLDWPSVDEEVEDEGRERQRSLKRERRQELQREREQLQQQQDEVG QPREAMQRRGRQRLELRNTAVAEAAAEEEAAITPLSLLAQVAQQYGGFAA LPGQPESLPSSDPSPWISLALVATAAAGPTTPTAPLEV* back to top mRNA from alignment at P-littoralis_Contig100:557877..563467+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig100.156.1 ID=mRNA_P-littoralis_Contig100.156.1|Name=mRNA_P-littoralis_Contig100.156.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5591bp|location=Sequence derived from alignment at P-littoralis_Contig100:557877..563467+ (Pylaiella littoralis U1_48)TGCATCTGCTGCACGCAGCTTCCCGACGTGGGACAGGGCATCATCCCCTG
C GTGAGTACAGCAATACCATGCACCAAGAATACGAATTCTCGTAGCAGCC
CTCCTTCCTCGAGGGAAACGAGAGTTGAAACCTGTTGCAGTCGACTGTTA
GGTGTATATTTTCCCCTCACGTACTGCACATTATAGTTGCATGCATACAT
ACTTCAAGAGTGACATGCAGGGGGCAAGCGCTCATGCCGTTTTGGGAGTT
CCCAAATTATGCATGTTTACGTTTTGTTTTCTGTTCGTTTCTCAGACTTG
ATGCAGTATACTGCACTGCTGAATATTCAACTTCTCTTAAGGTCGCAATA
CTATGTTTTTGGTATCGTCTAGTCTTGTTTCTTCTGCTGAACTCAAGACG
GTAGGCCCGGCACGTGTTGGAAGTCCTTGTCCACTTGCGGATGCACGGGA
TACCAAAAGATATGCTTGCGCGCCCTTGAACCAACGGAGAAAACCGAGCT
AAACAAAATGGACGGGTACGGAGCCGTTTTTGTGGGGGAAGACAAATATG
GCAATCGTATGTGACGCCGCGAGCATTTTTTATCTTGTCGTATTGCTGTG
GAGTGGAAAGCGACAACCTCGTTAGCTAGAGAAAAACAAACCTCGACTCG
AGAAAATGAAGTCGGCGAGGGAAAAAGGACGGTCGAACCCATTTCGTGAA
GAAAGAGTGAGGCAGGCACCGTAAAGGGAAGGCGGAAGGAAGCAAAAGAC
GGCAAAACTCCTCTGTTGACCCTCTTTCTGTGCGAATACACGGCTGGTCC
GGCCAACGTATACCGGACTACTGTGTGTGTAGACTGGCGCCCAGAAAAGA
TGAAATCACAACACACTTTTACATGCACACATCGTGGCAAACGAAGTTCT
ACTCGCAAATGAAGTCGGCGAGGTAAAAAAGGACGATCGGACCCTTGCCT
TGCGATAAAAACGGAAGCAAGCATCGCAGAAGGTAGGCGGAGAGCAAAAA
GAAATTAAAACTCTTGCCTTAGCCTTACGCCCGTTTGAATGCGGCTGATG
CTGCCAAATCATGCCGAAACGTGTAGTAAACTGGCGCCCAGAATAGTTGG
GATGACAACACACACACACACATCGTCTTTCGGTTTGACGGCCATCATGC
CGTTTTTCCAGGGCCACGTTCATTCACTTTTGGTGCTCCAACTAATCGAC
CACGACAACGGGGCTGTGTAAGACATGCCGCTCGGAGAGTTCAATGAAAT
AAAGGAAATGATTACTGTACTCCATACCATAAGAACAGCTATGTTACGAT
CGTCTTTGTTGTCGCCGTCTTGTCCCAGTGATGGATGCAGGAGGAGTAGA
GTTCCTTGTCCTGGACAGGCGGTAGGGCCGCAAGACGAAAAAAACCAACA
TCGTAACAACACCCTGCTTTGTGTACGGGAAAAAGATAAACATAAACAGA
CGGTTGTTTATGCTTTCTTCGACATTTTTCTGGGTCTTTCCGTTTTCTTA
TTGTTTTCTTTTCTTTCAATCTCGCCCTCTTGCCGCTGTTCAGGGTCATG
TTTTCTGCTTTTACTGCATCCAAAAGTGGTCCAAGAATGCGAACGTATGC
CCCACGTGCCGTCTGGAGTTTACGAAGATCTCCAAGACG ATGTCACTCAA
GGACTTGACGAAGGAGGAGGCTCACAGAGAG GTATGGTATGGTATGGTCC
GTACGTGCTTGTTCAGTGATTGGCCAACCAAAAAAACGGGTGGTCTTCTT
GATGAAGTCATTCGTGTGACAATGTCGTGTTGCATGGCAACTTCTATTCC
TGTCAATCAGAACCAACCTGTTCGTGCGGGCCTTTTTACTACACGGAAGA
GTAATACAGCTTCTTGTGCTGTCGAAGCAGGCCCTCTGCCGATATGTATA
TATTTTTCCCATAGACCCAAACGATCGAGAAATGCAATATTTGTCTGACA
GGGTGGATGCACCAGAAAAGCAATCGAGACGACACAAATGTTTTGAGCTC
GCCGCGCCTCAGGCCTACGACAATGATAATATCTCGTTTACGCACCAGTG
TTGGCTTGCGAGACAGTTGATGATATCTCGCGGTCTCGAGCGGTCACGAC
ACGACAGGGACACGCCACAGGCACAGCTTTGGCCGATAGCTTTAGCATTG
CTGCTCTTGCTTCTGTTGTTCGGGAGCATCGAAACGACGGGCGAACTTGA
AACAGCGAAACGATCTGTACCCAGCAGTCAAATTATGTTTCATTTGTTGT
TTATCCCCGAAAACCCGAAAACAAGCTCGAGTTGCGAGTCTACTTCGGCG
CATGCTCTCGCTCTCCCTGCTGTGGAGTGTACAATTGGCCTTCGAAGCTC
GGTCTCGAGGGTGTTACCGTGTGTCAGCCCAGCTTGAGAGTAGAGTGCGG
TAGCTCGGGGTGTGTTCCCTTCTGGTTGTGGCTATATGATAGGCCGATAC
TGCAGCCCGTTCTATCCCCTGGAGGGCATGTCAAAAGGGAGTCTGTTACC
GAAGGTATACCTGGTAAGTATAAAGCAAACGAGAATCAACGAGGAGCGAA
ACAGCCATGACGGAAAGAAGCGCGGACCCCGTATGTGCTTGTTTTGAATG
GCTAGGTGCGATGTGAACAATCGAGTCTCGATAAAATAGTGCTCTGTGCT
TCGTGTCTGTGCCTGCACGTTCTCGTTGCCCTTGTCTGTACTACTGCTGT
AGGGCGATTTTTTTTTTAAGCGTTCGATGGGAATATATATGCAGAAGATG
CATTTGAATACTTGTGCTGACGGTTGCACTCTACTGCTGTTGTTGTTACT
CTTTTTTGAGTAATTTTTTTCGATAGGGCAACAAGAATAAGAAGTGTACC
ACCAAGCGTAAGGCGGCTCGTGGGAAGACTCCG GTGAGTCCTCTTTCTCG
CTCTCTGAGTGTTGTTGTTGTTGCTGTTGTTGTTGTTGGTGGTGATGGTG
GTGGTGGTGGTGGTGGTGGTGGTGGTGGTTGTTGTTGTTGCTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGTTCTCGGCTTTCGTTAGT
GACACGTCGACGCGCTTGCTCCAACGCATGCCACCCGCACTCTTGATCGT
CCCTTCTGTCCACGCTGTGCTGATGTGCTGTTGACGTGACACCGAACGTG
GTGTTCCTGATGATCGACAGGTGGAAGGGGTCTACGTGAAGGTCTTCCGA
GTTAGGAAGAAGACGCAGAATCTCACTCCGGCACAGCAGGCTGCCCTCCC
CCACCCCCAG GTGCCTTGGCTCAGTGATGAATGTGAAACGCTTGTGCTTG
TTGTAATTGCAACCGCTCGGACCTCGTCCCCAGCTCCTTCGTATTCCGTG
CTGCCGTTTCAACCCGTGAGAGATGTGGCTTCCGCCTCCGTGGTCTCTTT
GGGCAAACTTTAGCACTGTCAAATACAAGCACGTCAAACAAAAAATGGCC
CTCGCACCAACGAGATCCGGCCTAGGTACGATACAGATACACGTAGGCGA
TAGACAGACCCAGAAAACTTCCTCGTTGGCGAAGATGTAAACACACACAC
GAAAATCAACATGAGAATGGATATGTATTGGTTCTTGGGACTTGGGATTT
GTGTGGGTGAAGCCTGTAGTTCGGAGAATACATTCAACCGTCGAGGCGCA
TTTTTGTGTCGACAAAACACTTCACAACCCGGCTTGCTACTGCTGTATAT
TTTCCTTCCGAAAACATTGTTGTCACCTTGTACGTATCGACGTGCGTGTG
ATATCTTCTTCGCGGCACGCTTATCGGTCGAACAAACAGGCTCCGGGAGG
GTTTTTGCACGTGCCGGGAGGCCCGGCGGCAGGCGTGGCGGCAGGCGTGG
CGGCAGGTGCGGCGGCAGGTGCGGCGGCAGACATGGGGGGATATCTTGCG
GGAGGCTTCACGCAACTCCAAGAGCAAAGGGACCAGCTGCACGTAGAACA
GGCAGTCACACGTGCCCGGGAGGAAGCAGCCGAGGAGCAGAGCCGAGCAC
GGGCAGCCCGGCAGCAGGCGGTGGCAGCCCGGCAGCAGGCGGTGCGAGCA
GCCGAGCTGGCAGCCGAGGACGAGGCACGGGAGGCCCGCGACAGAACGGC
CGCGGCGGCGGCGGCGGCGGCGGAGCAGGAGGAGCAGGAGCAGGAGGAAG
AGGAAGAGGAAGAGTCCAGGTGGTCTCTGGGTGTGAACGGCTGGACGCGG
AGGAGGCGGGAGGCGGTGGTCGATGCTGACACATCCGACGATGAGGTCAC
CCCGGGAACGATGATGGATGCCGATTCAGCGTGGTTCGGTCCCGGGACGA
GTGTCGGTTGGGGGCAAGAACACATACAGCGCGCCGCCGCCCCCTCTCAA
ACGGTGGCCGCGGCGGCCGCGGTTTCGCAGGGCTCGAACACCTGGGTGGG
TGTAGCTTCAACCGTTGGTGCGCGTACTCGGGACACGTATCTTGGCCGGT
TTACCGCGTCGGTGGAGCAAGCGGAGCGAGAGCGGGAGCAGCGGCGGGAG
GAGGACCGCAGCCGCCGGCTTGACTGGCCATCGGTTGATGAGGAAGTCGA
AGACGAGGGCCGGGAACGGCAGCGCTCGCTGAAGCGTGAGCGGCGGCAGG
AACTGCAGCGGGAGCGGGAACAGCTGCAGCAGCAGCAAGACGAGGTGGGC
CAGCCACGGGAGGCCATGCAGCGCCGGGGGCGGCAACGGCTGGAACTCCG
GAACACTGCGGTGGCGGAGGCGGCGGCAGAGGAAGAGGCGGCAATCACTC
CCTTGTCGCTGTTGGCGCAGGTGGCGCAGCAGTACGGAGGTTTTGCTGCT
CTTCCCGGCCAACCAGAGTCCCTGCCATCTTCCGACCCCTCGCCTTGGAT
CTCTCTGGCCTTGGTCGCCACGGCCGCTGCCGGGCCCACTACCCCGACGG
CTCCCCTCGAGGTCTAG GAGCGGCGGCGGCGGCGGCGGCGTGGTTGGCTG
ACGGCGGAGACACGAATGGGGGTCGAGCACCCTTCCTTTACTGGCGCAAT
CCCTCAGTTACTTCACGCCAGGCGGTGGGGGAAAAGATCGTTGTTTCGGA
GTGTCTCTATTGTTGACTGATGAGCAACGGCGGCGAGGGAGACAGCAAAG
GTGGAGGAACGGGGTTGGAGACTCGGTGTTGTCCTTTATTTCGGTGCAGC
AGTGGCAAACCCTGGTACCACCCCCCCCGTCTGACACTGATGCTGTACGA
TTCTGTGAACATCCGCCTTAATGTACGGTAGTCTAGCGCAATTTGTTTTT
TCGCTTGCACGTTCTCATCCAGTTGATCGTTGCGGGGGTGCACGTGGGGT
TATTGCCGGAGGAGCGATGCGCCGGTAAACGTTTCAGAATGTTGGTGCCG
TTTTTGAGGAGGACAAGAACACGTGGGTGTCACGAACGAAAAATACCAGG
GGTTGAAGTGAAGTTGCAGCAGGTAAACTAGAGAGGGGAGGACGCGTGAG
GCGGGACTTGAGAAGGAGGAGATTATTGATTTAATTTGTTTAAAAGGGAC
ACAGTGGTTGGTGAATCCCTTATTTCTAGCTCACGACGGTAAATAAGGGA
AGCAGGTAGGCTATTTCGTACAAGTATATGTTAAAGAACGC back to top Coding sequence (CDS) from alignment at P-littoralis_Contig100:557877..563467+
>mRNA_P-littoralis_Contig100.156.1 ID=mRNA_P-littoralis_Contig100.156.1|Name=mRNA_P-littoralis_Contig100.156.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1317bp|location=Sequence derived from alignment at P-littoralis_Contig100:557877..563467+ (Pylaiella littoralis U1_48) ATGTCACTCAAGGACTTGACGAAGGAGGAGGCTCACAGAGAGGGCAACAA GAATAAGAAGTGTACCACCAAGCGTAAGGCGGCTCGTGGGAAGACTCCGG TGGAAGGGGTCTACGTGAAGGTCTTCCGAGTTAGGAAGAAGACGCAGAAT CTCACTCCGGCACAGCAGGCTGCCCTCCCCCACCCCCAGGCTCCGGGAGG GTTTTTGCACGTGCCGGGAGGCCCGGCGGCAGGCGTGGCGGCAGGCGTGG CGGCAGGTGCGGCGGCAGGTGCGGCGGCAGACATGGGGGGATATCTTGCG GGAGGCTTCACGCAACTCCAAGAGCAAAGGGACCAGCTGCACGTAGAACA GGCAGTCACACGTGCCCGGGAGGAAGCAGCCGAGGAGCAGAGCCGAGCAC GGGCAGCCCGGCAGCAGGCGGTGGCAGCCCGGCAGCAGGCGGTGCGAGCA GCCGAGCTGGCAGCCGAGGACGAGGCACGGGAGGCCCGCGACAGAACGGC CGCGGCGGCGGCGGCGGCGGCGGAGCAGGAGGAGCAGGAGCAGGAGGAAG AGGAAGAGGAAGAGTCCAGGTGGTCTCTGGGTGTGAACGGCTGGACGCGG AGGAGGCGGGAGGCGGTGGTCGATGCTGACACATCCGACGATGAGGTCAC CCCGGGAACGATGATGGATGCCGATTCAGCGTGGTTCGGTCCCGGGACGA GTGTCGGTTGGGGGCAAGAACACATACAGCGCGCCGCCGCCCCCTCTCAA ACGGTGGCCGCGGCGGCCGCGGTTTCGCAGGGCTCGAACACCTGGGTGGG TGTAGCTTCAACCGTTGGTGCGCGTACTCGGGACACGTATCTTGGCCGGT TTACCGCGTCGGTGGAGCAAGCGGAGCGAGAGCGGGAGCAGCGGCGGGAG GAGGACCGCAGCCGCCGGCTTGACTGGCCATCGGTTGATGAGGAAGTCGA AGACGAGGGCCGGGAACGGCAGCGCTCGCTGAAGCGTGAGCGGCGGCAGG AACTGCAGCGGGAGCGGGAACAGCTGCAGCAGCAGCAAGACGAGGTGGGC CAGCCACGGGAGGCCATGCAGCGCCGGGGGCGGCAACGGCTGGAACTCCG GAACACTGCGGTGGCGGAGGCGGCGGCAGAGGAAGAGGCGGCAATCACTC CCTTGTCGCTGTTGGCGCAGGTGGCGCAGCAGTACGGAGGTTTTGCTGCT CTTCCCGGCCAACCAGAGTCCCTGCCATCTTCCGACCCCTCGCCTTGGAT CTCTCTGGCCTTGGTCGCCACGGCCGCTGCCGGGCCCACTACCCCGACGG CTCCCCTCGAGGTCTAG back to top