mRNA_P-littoralis_Contig10.66.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig10.66.1
Unique NamemRNA_P-littoralis_Contig10.66.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig10.66.1 vs. uniprot
Match: D8LN68_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN68_ECTSI)

HSP 1 Score: 330 bits (847), Expect = 3.680e-99
Identity = 188/293 (64.16%), Postives = 219/293 (74.74%), Query Frame = 3
Query:   99 TRSINVKFQGASRDVVLPNSVTLAGLQAAIASTFKVDLPARSGADDEPKHSDLSFTYKDPEGDDIVFDKDSELKLALRLSPSSLKISAACK-TKPTDKPDPELELYQIAARNLREYHGVPSMTPAKLTKTLVFLKLKPRRLVKQGLAPDALLARADAETKN-----KLPLGDDDNNEDLVESVATDVEMMNVDEDDKKEWNDGFVSVESAATPAAXXXXXXXXXXTSA-AKKDVLHEAFVAGGIQLRPREVQPLLVALGVRPGRLVRFGYVDGRCLRAMLEAEKR-ANKRNGH 953
            T SI + FQG SRDV +P  VTLA LQAAIA  F  +LP RS A +  K +DLSFTYKDP+GDDIVFDKDSEL LA+RL P SL+ISAA K  KP +KPDPE  LY+IAARNLREY+GVPSMTP KL KTL FL+L P+RLVKQGLAP  LLAR  AE  N     K+PLGD  NNEDL ESVA  +E+M+V EDDKKEWNDGFVSVE A T +            +   KK+++H+AF+AGGIQLRPREV+PLLVAL VRP RL + G V+G+ LRAML+AEK+ A+KR GH
Sbjct:    3 TSSIKINFQGTSRDVNVPVPVTLASLQAAIAGAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPGSLEISAAGKENKPANKPDPEARLYKIAARNLREYNGVPSMTPLKLVKTLAFLELNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGKNNEDLAESVAAGMELMSV-EDDKKEWNDGFVSVEPADTSSPGNDNEEKNDAVAPEVKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVNGKDLRAMLQAEKKVAHKRRGH 294          
BLAST of mRNA_P-littoralis_Contig10.66.1 vs. uniprot
Match: A0A6H5JQ17_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ17_9PHAE)

HSP 1 Score: 325 bits (833), Expect = 5.680e-97
Identity = 189/303 (62.38%), Postives = 219/303 (72.28%), Query Frame = 3
Query:   99 TRSINVKFQGASRDVVLPNSVTLAGLQAAIASTFKVDLPARSGADDEPKHSDLSFTYKDPEGDDIVFDKDSELKLALRLSPSSLKISAACK-TKPTDKPDPELELYQIAARNLREYHGVPSMTPAKLTKTLVFLKLKPRRLVKQGLAPDALLARADAETKN-----KLPLGDDDNNEDLVESVATDVEMMNVDEDDKKEWNDGFVSVESAATPAAXXXXXXXXXXTS-----------AAKKDVLHEAFVAGGIQLRPREVQPLLVALGVRPGRLVRFGYVDGRCLRAMLEAEKRA-NKRNGH 953
            T SI + FQGASRDV +P  V+LA LQAAIA+ F  +LP RS A +  K +DLSFTYKDP+GDDIVFDKDSELKLA+RL PSSL+ISA  K ++P  KPDPE  LY+IAARNLREY+GVPSMT  KL KTL FLKL P+RLVKQGLAP  LLAR  AE  N     K+PLGD  NNEDL ESVA  +E+M+V EDDKKEWNDGFVS ES A+ AA           +             KKD++H+AF+ GGIQLRPREV+PLLVAL VRP RL + G VDG+ LRAML AEK+A +KR  H
Sbjct:   21 TPSIKINFQGASRDVNVPAPVSLASLQAAIAAAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISATLKESEPAKKPDPEARLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGKNNEDLAESVAAGMELMSV-EDDKKEWNDGFVSAESDASAAAVPITAKTSTPDNDNEEENNDAAPETKKDLIHKAFITGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDLRAMLRAEKKAAHKRCDH 322          
BLAST of mRNA_P-littoralis_Contig10.66.1 vs. uniprot
Match: D8LN66_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN66_ECTSI)

HSP 1 Score: 321 bits (823), Expect = 1.600e-96
Identity = 190/312 (60.90%), Postives = 222/312 (71.15%), Query Frame = 3
Query:   99 TRSINVKFQGASRDVVLPNSVTLAGLQAAIASTFKVDLPARSGADDEPKHSDLSFTYKDPEGDDIVFDKDSELKLALRLSPSSLKISAACKTKPT-DKPDPELELYQIAARNLREYHGVPSMTPAKLTKTLVFLKLKPRRLVKQGLAPDALLARADAETKN-----KLPLGDDDNNEDLVESVATDVEMMNVDEDDKKEWNDGFVSVESAATPAAXXXXXXXXXXTSA-AKKDVLHEAFVAGGIQLRPREVQPLLVALGVRPGRLVRFGYVDGRCLRAMLEAEKR-ANKRNGHQCMARGGGAGAPGAGGNRG 1010
            T SI + FQGASRDV +P  VTLA LQA IA+ F  +LP RS   +  K +DLSFTYKDP+GDDIVFDKDSELKLA+RL P SL+ISAA K K   + PD E  LY+IAARNLREY+GVPSMTP KL KTL FLKL P+RLVKQGLAP  LL R  AE  N     K+PLGD  NNEDL ESVA  +E+M++ EDDKKEWNDGFVSVE A T +            +   KK+++H+AF+AGGIQLRPREV+PLLVAL VRP RL + G VDG+ LRAML+AEK+ A+KR+G            PG GG RG
Sbjct:   19 TSSIKINFQGASRDVNVPAPVTLASLQAVIAAAFDAELPVRSPGGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAMRLCPGSLEISAAGKEKKAAEMPDSEARLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKNLLPRMKAEAANNAKVSKVPLGDGKNNEDLAESVAAGMELMSL-EDDKKEWNDGFVSVEPADTSSPDNDNEEKNDAVAPEVKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDLRAMLQAEKKTAHKRHG------------PGHGGPRG 317          
BLAST of mRNA_P-littoralis_Contig10.66.1 vs. uniprot
Match: A0A6H5KAY7_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY7_9PHAE)

HSP 1 Score: 320 bits (819), Expect = 6.860e-96
Identity = 192/312 (61.54%), Postives = 223/312 (71.47%), Query Frame = 3
Query:   99 TRSINVKFQGASRDVVLPNSVTLAGLQAAIASTFKVDLPARSGADDEPKHSDLSFTYKDPEGDDIVFDKDSELKLALRLSPSSLKISAACK-TKPTDKPDPELELYQIAARNLREYHGVPSMTPAKLTKTLVFLKLKPRRLVKQGLAPDALLARADAETKN-----KLPLGDDDNNEDLVESVATDVEMMNVDEDDKKEWNDGFVSVESAATPAAXXXXXXXXXXTSA-AKKDVLHEAFVAGGIQLRPREVQPLLVALGVRPGRLVRFGYVDGRCLRAMLEAEKRA-NKRNGHQCMARGGGAGAPGAGGNRG 1010
            T SI + FQGASRDV +P   TLA LQAAIA+ F+V+LP RS   +  K +DLSFTYKDP+GDDIVFDKDSEL LALRL P SL+ISAA K  K T  PD E  LY+IAARNLREY+GVPSMTP KL KTL FLKL P+RLVKQGLAP  LLAR  AET N     K+ LGD  NNEDL E VA  +E M+V EDDKKEWNDGFVSVE A T ++           +   K++++H+AF+AGGIQLRPREV+PLLVAL VRP RL + G VDG+ LRAML+AEK+A +KR+G            PG GG RG
Sbjct:   30 TSSIKINFQGASRDVSVPAPATLARLQAAIAAVFEVELPVRSLTGEAAKDTDLSFTYKDPDGDDIVFDKDSELNLALRLCPGSLEISAAGKENKATKMPDSEETLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKMLLARMKAETANNAKLSKVRLGDGKNNEDLAEWVAAGMEFMSV-EDDKKEWNDGFVSVEPAETSSSDNGNEEENDDAAPEVKQNLIHKAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVDGKDLRAMLQAEKKAAHKRHG------------PGHGGPRG 328          
BLAST of mRNA_P-littoralis_Contig10.66.1 vs. uniprot
Match: A0A6H5JPU3_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPU3_9PHAE)

HSP 1 Score: 315 bits (807), Expect = 3.940e-94
Identity = 193/326 (59.20%), Postives = 224/326 (68.71%), Query Frame = 3
Query:   99 TRSINVKFQGASRDVVLPNSVTLAGLQAAIASTFKVDLPARSGADDEPKHSDLSFTYKDPEGDDIVFDKDSELKLALRLSPSSLKISAACK-TKPTDKPDPELELYQIAARNLREYHGVPSMTPAKLTKTLVFLKLKPRRLVKQGLAPDALLARADAETKN-----KLPLGDDDNNEDLVESVATDVEMMNVDEDDKKEWNDGFVSVESAATPAAXXXXXXXXXXTSAAKKDVLHEAFVAGGIQLRPREVQPLLVALGVRPGRLVRFGYVDGRCLRAMLEAEKR-ANKRNG--HQCMARGGGAGAPGAGGNRGPRGGLTMMVRHLL 1049
            T SI + FQGASRDV +   V LA LQAAIA+ F V+LPARS A +    +DLSFTYKDP+GDDIVFDK+SEL+LALRL P SL+ISAA K  K T  PD E +LY+IAARNLREY+GVPSMTP KL KTL FLKL P+RLVKQGLAP  LLAR  AE  N     K+PLGD  NNEDL ESVA  +E+M+V ED KKEWNDGFVSVE A                  AKK+++H+AF+AGGIQLRPREV+PLLVAL V P RL + G V G+ LRAML AEK+ A+KR+G  H  +   G        G RGP GG       L+
Sbjct:   21 TSSIKITFQGASRDVNVRVPVMLASLQAAIAAAFDVELPARSSAGEAANDTDLSFTYKDPDGDDIVFDKESELQLALRLCPGSLEISAAGKENKATRMPDSEEKLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGKNNEDLAESVAAGMELMSV-EDGKKEWNDGFVSVEPAEISFPANDNEEKNDAAPEAKKNLIHKAFIAGGIQLRPREVRPLLVALDVLPYRLAKLGLVGGKDLRAMLRAEKKTAHKRHGPGHAGLQHLGHVERMAHSGPRGPTGGFARGPAGLI 345          
BLAST of mRNA_P-littoralis_Contig10.66.1 vs. uniprot
Match: A0A6H5KB69_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB69_9PHAE)

HSP 1 Score: 305 bits (780), Expect = 4.870e-89
Identity = 181/303 (59.74%), Postives = 214/303 (70.63%), Query Frame = 3
Query:   99 TRSINVKFQGASRDVVLPNSVTLAGLQAAIASTFKVDLPARSGADDEPKHSDLSFTYKDPEGDDIVFDKDSELKLALRLSPSSLKISAACK-TKPTDKPDPELELYQIAARNLREYHGVPSMTPAKLTKTLVFLKLKPRRLVKQGLAPDALLARADAETKN-----KLPLGDDDNNEDLVESVATDVEMMNVDEDDKKEWNDGFVSVESAATPAAXXXXXXXXXXTS-----------AAKKDVLHEAFVAGGIQLRPREVQPLLVALGVRPGRLVRFGYVDGRCLRAMLEAE-KRANKRNGH 953
            T SI + FQG SR+V +    TLA LQA IA+ F  +LP RS A +  K +DLSFTYKDP+GDDIVFDKDSEL LA+RL P SL+ISAA K  KP +KPDPE  LY+IAARNLREY+GVPSMT  KL KTL FLKL PRRLVKQGLAP  LLAR  AE  N     K+ LGD +NNEDL ESVA  +E+M+V EDDKKE N+GFVS +  A+ AA           +             KK+++H AF+AGGIQLRPREV+PLLVAL VRP RL + G V+G+ LRAML+AE K A+KR+GH
Sbjct:    3 TSSIKINFQGTSRNVNVQAPFTLASLQATIAAAFDAELPVRSPAGEATKDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPDSLEISAAGKENKPDNKPDPEGRLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPRRLVKQGLAPKNLLARMKAEAANNMKVSKVTLGDGENNEDLAESVAAGMELMSV-EDDKKECNNGFVSAKPDASAAAVPITAKTSSPDNDNEEENDDAAPEVKKNLIHTAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVNGKYLRAMLQAETKAAHKRHGH 304          
BLAST of mRNA_P-littoralis_Contig10.66.1 vs. uniprot
Match: D8LN82_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN82_ECTSI)

HSP 1 Score: 281 bits (720), Expect = 2.350e-83
Identity = 168/285 (58.95%), Postives = 197/285 (69.12%), Query Frame = 3
Query:   99 TRSINVKFQGASRDVVLPNSVTLAGLQAAIASTFKVDLPARSGADDEPKHSDLSFTYKDPEGDDIVFDKDSELKLALRLSPSSLKISAACK-TKPTDKPDPELELYQIAARNLREYHGVPSMTPAKLTKTLVFLKLKPRRLVKQGLAPDALLARADAETKN-----KLPLGDDDNNEDLVESVATDVEMMNVDEDDKKEWNDGFVSVESAATPAAXXXXXXXXXXTS-----------AAKKDVLHEAFVAGGIQLRPREVQPLLVALGV-------RPGRLVRF 881
            T SI + FQGASRDV +P  VTL  LQAAIA+ F  +LP RS A +  K +DLSFTYKDP+GDDIVFDKDSELKLA+RL PSSL+ISAA K +KP +KPDPE  LY+IAARNLREY+GVPSMTP KL KTL FLKL P+RLVKQGLAP  LLAR  AE  N     K+PLGD  NNEDL +SVA  +E+M+V  +DKKEWNDGFVS ES A  AA           +             KK+++H+AF+AGGIQLRPRE   L V++ V        P RL+ F
Sbjct:   18 TSSIKINFQGASRDVNVPAPVTLDSLQAAIAAAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISAALKESKPANKPDPEARLYKIAARNLREYNGVPSMTPPKLIKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGKNNEDLADSVAAGMELMSV--EDKKEWNDGFVSAESDAPAAAAPITAETSSPDNDKEEENDDAAPEVKKNLIHKAFIAGGIQLRPREGLLLGVSIFVTVKPKEEEPSRLLPF 300          
BLAST of mRNA_P-littoralis_Contig10.66.1 vs. uniprot
Match: A0A6H5KVV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV7_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 9.350e-19
Identity = 81/211 (38.39%), Postives = 97/211 (45.97%), Query Frame = 3
Query:  408 LYQIAARNLREYHGVPSMTPAKLTKTLVFLKLKPRRLVKQGLAPDALL---ARADAETKNKLPLGDDDNNEDLVESVATDVEMMNVDEDDKKEWNDGFVSVESAATPAAXXXXXXXXXXTSAAKKDVLHEAFVAGGIQLRPREVQPLLVALGVRPGRLVRFGYVDGRCLRAMLEAEKRANKRNGHQCMARGGGAGAPGAGGNRGPRGGLTM 1031
            LY+  ARNLREYHGVPSMT   L KT+V L+L+P RLV QGLAP+ LL   + ADA        G          S  ++VE    D++   +                          T+   K  +H A VA GI LRPRE +PLL ALGV P RLV+ G V    LR       R   R G     R G  G PG   +   RGG  M
Sbjct:   26 LYKATARNLREYHGVPSMTADNLEKTMVLLRLRPGRLVVQGLAPEKLLKGFSAADAHADTTDSSG----------SSGSEVEPEQADDNQVSDDXXXXXXXSGDTEHDNIRKHNSLGFETNKRSKHPVHAALVAAGITLRPRETRPLLRALGVGPHRLVKLGLVQREELR-----RSRPGGRRGGPSHLRHGHPGGPGGRXHXXXRGGRGM 221          
BLAST of mRNA_P-littoralis_Contig10.66.1 vs. uniprot
Match: A0A6H5K3J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J2_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 3.960e-12
Identity = 60/155 (38.71%), Postives = 76/155 (49.03%), Query Frame = 3
Query:  393 DPELELYQIAARNLREYHGVPSMTPAKLTKTLVFLKLKPRRLVKQGLAPDALL----ARADAETKNKLPLGDDDNNEDLVESVATDVEMMNVDEDDKKEWNDGF-VSVESAATPAAXXXXXXXXXXTSAAKKDVLHEAFVAGGIQLRPREVQPLL 842
            +P   LY+ AARNL EYHGVPSMT   L KT+V L+L+P RLV QGLAP  LL    A  DA                 V+    D   ++  +D      DG  +  +  AT  +           + A K  +H  FVA G+QLRPRE +PLL
Sbjct:   46 EPNPLLYKAAARNLCEYHGVPSMTAGGLEKTMVLLQLRPGRLVAQGLAPKQLLEGKSAAGDAXXXXXXXXXXXXXXXXEVDPEQADNNQVS--DDSNTNSRDGTDIEHDHVATQDSIDIE-------TGASKHPIHAVFVAAGVQLRPRETRPLL 191          
BLAST of mRNA_P-littoralis_Contig10.66.1 vs. uniprot
Match: A0A6H5JCG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG1_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 8.350e-12
Identity = 63/161 (39.13%), Postives = 83/161 (51.55%), Query Frame = 3
Query:  375 KPTDKPDPELELYQIAARNLREYHGVPSMTPAKLTKTLVFLKLKPRRLVKQGLAPDALL-----ARADAETKNKLPLGDDDNNEDLVESVATDVEMMNVDEDDKKEWNDGFVSVESAATPAAXXXXXXXXXXTSAAKKDVLHEAFVAGGIQLRPREVQPLL 842
            K T +P+P +  ++ AARNLREYHGVPS+TP  L  T+V L+L+P RLV QGLAP  LL     A  DA++ +    G +   E      + D+   + D  D    ND  V+  S    A              A K  +   FVA G+QLRPRE +PLL
Sbjct:   32 KRTGEPNPLM--FKAAARNLREYHGVPSITPGGLETTMVLLELRPARLVAQGLAPKILLKGNSTAGVDADSTDGSG-GFEAEEEQANNQFSHDLSSNSSDGGDTG--NDNIVTQNSIGFEAR-------------ASKHPIQAVFVAVGVQLRPRETRPLL 174          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig10.66.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LN68_ECTSI3.680e-9964.16PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JQ17_9PHAE5.680e-9762.38PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LN66_ECTSI1.600e-9660.90PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KAY7_9PHAE6.860e-9661.54PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JPU3_9PHAE3.940e-9459.20PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KB69_9PHAE4.870e-8959.74PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LN82_ECTSI2.350e-8358.95PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KVV7_9PHAE9.350e-1938.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3J2_9PHAE3.960e-1238.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCG1_9PHAE8.350e-1239.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig10contigP-littoralis_Contig10:309047..313045 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3032
Hectar predicted targeting categoryother localisation
Exons2
Cds size1353
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789330.3394725-UTR-P-littoralis_Contig10:309046..3106991680789330.3394725-UTR-P-littoralis_Contig10:309046..310699Pylaiella littoralis U1_48UTRP-littoralis_Contig10 309047..310699 -
1680789330.3813918-UTR-P-littoralis_Contig10:313019..3130451680789330.3813918-UTR-P-littoralis_Contig10:313019..313045Pylaiella littoralis U1_48UTRP-littoralis_Contig10 313020..313045 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789330.35672-CDS-P-littoralis_Contig10:310699..3117011680789330.35672-CDS-P-littoralis_Contig10:310699..311701Pylaiella littoralis U1_48CDSP-littoralis_Contig10 310700..311701 -
1680789330.3674057-CDS-P-littoralis_Contig10:312668..3130191680789330.3674057-CDS-P-littoralis_Contig10:312668..313019Pylaiella littoralis U1_48CDSP-littoralis_Contig10 312669..313019 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig10.66.1prot_P-littoralis_Contig10.66.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig10 310700..313019 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig10.66.1

>prot_P-littoralis_Contig10.66.1 ID=prot_P-littoralis_Contig10.66.1|Name=mRNA_P-littoralis_Contig10.66.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=451bp
MTTNNKTANNTTNNKDSMTNTTTTTRSINVKFQGASRDVVLPNSVTLAGL
QAAIASTFKVDLPARSGADDEPKHSDLSFTYKDPEGDDIVFDKDSELKLA
LRLSPSSLKISAACKTKPTDKPDPELELYQIAARNLREYHGVPSMTPAKL
TKTLVFLKLKPRRLVKQGLAPDALLARADAETKNKLPLGDDDNNEDLVES
VATDVEMMNVDEDDKKEWNDGFVSVESAATPAAAAPAAAPAAETSAAKKD
VLHEAFVAGGIQLRPREVQPLLVALGVRPGRLVRFGYVDGRCLRAMLEAE
KRANKRNGHQCMARGGGAGAPGAGGNRGPRGGLTMMVRHLLHPRPVVPAK
GHAFRGGGGGGRPGGRPGGRPDAHHPSSRRGVHPPPPPPPPPPPPPRARV
WEWEGRARCSQRSPPRDGEDESVRRWVWRGSPAAAARVPVGVTRHSSSRP
*
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mRNA from alignment at P-littoralis_Contig10:309047..313045-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig10.66.1 ID=mRNA_P-littoralis_Contig10.66.1|Name=mRNA_P-littoralis_Contig10.66.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3999bp|location=Sequence derived from alignment at P-littoralis_Contig10:309047..313045- (Pylaiella littoralis U1_48)
CACACCCCATCATTCCCACAACCAAAATGACCACCAACAACAAAACCGCC AACAACACCACCAACAACAAAGACAGCATGACGAACACCACCACCACCAC CCGCTCGATCAACGTCAAATTCCAAGGCGCGTCTCGCGACGTCGTTCTTC CCAACTCGGTCACGCTCGCCGGTCTTCAAGCGGCCATCGCTTCAACCTTC AAGGTCGATCTGCCTGCACGCTCCGGCGCTGACGACGAGCCCAAGCACAG CGATCTGTCGTTCACCTACAAGGACCCCGAGGGAGACGACATCGTGTTTG ACAAGGACTCCGAGCTGAAGCTAGCGCTTCGTCTTAGCCCCAGCTCGCTC AAGATCTCAGCTGCCTGCAAGACAAAGGTGAGGGAGATTAACAGGCCGAT GTTGTCTTGAAGCATTCGGCAGACACAGAACGATCTTCATCTATCTGGAC TATGTACAAAGTACTTCAAGTAGTACCGGTATCTTCGTGGTCCCAGGTAT ACACAGCAGCAGCCGGATTCGTTCGGAGTGCCTTGTGGACTCGCAACCCC CAAAATAAGACGTGGATCGAAACATGGGGAAAACCTCCAAAACGTGTAGT CGTATAATGGTCGTGCTGCTGCAAGGTGCTTCAGTTTCTCCATGACAACT AGTATTCCATTTTCATCTGTTTTCATGACAAATGACGCAATAATATCAAA AACTCTCCTCCGTACAGCAGTACGGCAGTACGTGCAGTCGCGCGTGTCGT TCGAGGCTGTCCTCAGTCCTCCCTGCCACCTGGTGTGTACCAGGTGTATA TCGTAAGTCGTTTACCTGTACTAGCGCTGCTTTTGTCAGGTCGTCTGTAT ATGGCTTTACTTTCATCCTCTGATGAGTCTCCTTCTATTGATTCACCGGC CTGAGTACAGCAGTAGGACACTGAACCGAAATAATCCGAAAGCGTTACTC AGCCGCGCACTTTCCACGTCGTATCTCATCTTACGCACACGTACAGTAGT AACAGTACTCCATTCACGCACTCTCCATGCGCGTGCACCACCGCCTCTTG TCCATCTTGTGTGTGAAGATATATGCAACCGAAAAGAAGCATCACACAGT GGGGATACGGCGGGGGCGGTAATTTATCTTTCACTGCGCCCACTCTACTG TATTGCTGCTGTAGTTTATTTTTCCCGCTTGTCTCTCGCGGGCGGCAGCA AGCAGGCGGCGGTGTGCGTGTGACGCACCAGGACGTGGTTCAAATTACCA TCCTTCATCACCTGTTCCTGATGTATCCCACTAATGTGCACCCTTCTTCC CGCACACCCCCACCCGTGCGTCGATGACTACCCAATCCCTCCAGCCCACA GACAAGCCCGACCCCGAACTCGAGCTATACCAGATTGCTGCCCGCAACCT CCGCGAGTACCATGGCGTGCCCTCGATGACCCCGGCGAAGCTCACCAAGA CCCTGGTGTTCCTCAAGCTGAAGCCGCGCCGCCTCGTGAAGCAGGGCCTG GCCCCCGACGCGCTGCTGGCTCGCGCGGACGCCGAGACCAAGAACAAGCT GCCTCTCGGCGACGACGACAACAACGAGGACCTCGTCGAATCGGTCGCCA CCGACGTGGAGATGATGAACGTGGACGAGGACGACAAAAAGGAATGGAAC GACGGCTTCGTGTCCGTGGAGTCTGCCGCGACTCCTGCCGCTGCCGCGCC CGCTGCTGCGCCCGCCGCTGAAACGAGCGCTGCGAAGAAGGACGTCCTCC ACGAGGCCTTCGTCGCGGGTGGCATCCAGCTCCGCCCCCGCGAGGTCCAA CCTCTGCTCGTCGCCCTGGGCGTACGGCCTGGCCGCCTGGTCAGGTTCGG GTACGTTGACGGTAGGTGCCTCCGCGCCATGCTCGAAGCGGAGAAGAGGG CCAACAAGCGCAACGGACACCAGTGCATGGCCCGTGGTGGTGGTGCCGGT GCCCCGGGCGCTGGGGGCAATAGGGGTCCCCGCGGTGGGCTGACGATGAT GGTGCGCCACCTCCTCCACCCCCGCCCCGTCGTCCCCGCCAAAGGGCACG CGTTCCGCGGCGGCGGCGGCGGCGGTCGCCCTGGCGGGCGCCCCGGTGGT CGCCCCGATGCCCACCACCCCAGTTCCCGCCGCGGCGTCCACCCCCCCCC CCCCCCCCCACCACCACCACCACCACCACCACGCGCGCGGGTGTGGGAAT GGGAAGGGAGGGCCCGGTGTTCACAACGCTCCCCGCCCCGAGATGGTGAG GACGAGTCAGTGCGGCGGTGGGTGTGGCGGGGGTCGCCAGCTGCAGCAGC ACGGGTGCCAGTCGGGGTGACCCGTCACTCGTCGTCACGACCCTAGCCGA AGAAGGAAGGAAGGAAGGAGCCTGGTACTGCTCGCTGCTTTGTTGTCATG AGGACGAAGTAGAAGTTGTTACGAGGACTAGCGTAAGATTGTGGCTCTTG TTCTCTCGGCGTACTGCTGTGCGGCAGTTTTTTTTGCAATTGAGCAGAGG CCTCCCTCGGAAGAATTGATACGAGGGGTGGAGAACGGAAGGCTTGGCAG GTTGAGAAACCGTTTCACCGTTTGGCTTCTGCGCTCATGCAGCACGACGA CAAGCAACGCATCGTTTGTCTTTTTTGTTTTGTCTCTTGGTCGACTGAAC ACCTGTCGGGTGTGATACATTTATGTGCATGTAGTAATGACACCTGGTTT GTGTTTTTCCTCTCGATAGAAAGTATATAGTTCATGACGGGAAGAGTTGG GTGCGGGCATTCAAATCGTGAGTCCCGACTAGCAGTGCATGTTCGTTGTA TTTCGAGGGCGAGGGCTTGTGCCCAAGCGGTGGACAGTTGTTGCTGTGGT CAGGATTGTATCAAGCGGGTGTCAATGGGCTGGTTTGCTTGTCCCGAGAT CCGGCCGCATAGCCGATCGATACTGCCCGTGGCGTGCTCGAGTGTAGTAC CAAAAGCGGCAGCAGAAAGCAGCTTCAGAGGAGGGAGGGGCACTTTGGCT TTTTTTTGTAGGTGGGACACATGTCGCGCAGCGGTGTGTCCCAGGGTTGT CACGTAGTTTCAACGGGCTGGTCAGCTGTAATGATACGGCCGCAACGCCA ATCGATGCTGTTGTCGAGTGTACGGTGCCAAGAGCAGCAGCAGCACGCGG TTTCAAGGGAAGGAGAGGCACTTTTATTTTTTTGTAGAGGGGACACTTGT CGCGCAGGGGTTGGGTCTATGGGTAGTATACGCACGACGTGATATTAGTG GATGTGTGTCATGGGGTGGGGTCTTGGTGCAGCAGTCGGAGGCCAGTGAA TTACTCAGCGACCAACTCCGCTATTAATGAACATGTATTTGTGTGTCATT CAATTGACAAGATAGGTTTGTTCGTTCTTGCCTTTCTCATCGAAGCGAGA GCATTTTGCGGAGTAGACTTCCATACGTGTCATATACTCCAGTACTTCGT GTACACGTTGGACGAGAAAAAATGACCGGGCGCGTCGTGCGTTTGGTGTC TTGGTGTCGATGTGGGAGAAAACACCGTCGTGGCAGCCGTCTGTCGAAAG ATTTCGTCGTGATCACGAAGAACCGACGGCACGAGGTCGGTGGGTGCTGT TGGTAATTTGCTCGCTTGTCCCGAGGTATTTTCGGCAGTAAAGTATCGCA CGTCAGGTGTAGTTGCCGCGCGCCAGCTGGCGTTGCAGTGGTAGTAAGCG ACAAGGCGGTTGGCTGTGGAGTATGTGGGGTATCGGGGCGAGGGGCGCGC ATGCGTCACATCGACGATGTATGCTCATGTTTGGTGGAATCATACCTGAC GAAAATACGAACGAAATTACTAAAAAGTTGACCCTCGAGGTCTGAAGAAA CAAGCATTGTTGAACTGCTGTCTTGAGTGAGTTAGTACAACACGGTACAA CGTTGGAGATCGATCAGAATATCTCATGTTCTTCGTAGTACCGCCTCTCT AGTCGCACCTATCTGTGGTCCATTCAGAACAACTTCTTCCCCATTTTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig10:309047..313045-

>mRNA_P-littoralis_Contig10.66.1 ID=mRNA_P-littoralis_Contig10.66.1|Name=mRNA_P-littoralis_Contig10.66.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1353bp|location=Sequence derived from alignment at P-littoralis_Contig10:309047..313045- (Pylaiella littoralis U1_48)
ATGACCACCAACAACAAAACCGCCAACAACACCACCAACAACAAAGACAG
CATGACGAACACCACCACCACCACCCGCTCGATCAACGTCAAATTCCAAG
GCGCGTCTCGCGACGTCGTTCTTCCCAACTCGGTCACGCTCGCCGGTCTT
CAAGCGGCCATCGCTTCAACCTTCAAGGTCGATCTGCCTGCACGCTCCGG
CGCTGACGACGAGCCCAAGCACAGCGATCTGTCGTTCACCTACAAGGACC
CCGAGGGAGACGACATCGTGTTTGACAAGGACTCCGAGCTGAAGCTAGCG
CTTCGTCTTAGCCCCAGCTCGCTCAAGATCTCAGCTGCCTGCAAGACAAA
GCCCACAGACAAGCCCGACCCCGAACTCGAGCTATACCAGATTGCTGCCC
GCAACCTCCGCGAGTACCATGGCGTGCCCTCGATGACCCCGGCGAAGCTC
ACCAAGACCCTGGTGTTCCTCAAGCTGAAGCCGCGCCGCCTCGTGAAGCA
GGGCCTGGCCCCCGACGCGCTGCTGGCTCGCGCGGACGCCGAGACCAAGA
ACAAGCTGCCTCTCGGCGACGACGACAACAACGAGGACCTCGTCGAATCG
GTCGCCACCGACGTGGAGATGATGAACGTGGACGAGGACGACAAAAAGGA
ATGGAACGACGGCTTCGTGTCCGTGGAGTCTGCCGCGACTCCTGCCGCTG
CCGCGCCCGCTGCTGCGCCCGCCGCTGAAACGAGCGCTGCGAAGAAGGAC
GTCCTCCACGAGGCCTTCGTCGCGGGTGGCATCCAGCTCCGCCCCCGCGA
GGTCCAACCTCTGCTCGTCGCCCTGGGCGTACGGCCTGGCCGCCTGGTCA
GGTTCGGGTACGTTGACGGTAGGTGCCTCCGCGCCATGCTCGAAGCGGAG
AAGAGGGCCAACAAGCGCAACGGACACCAGTGCATGGCCCGTGGTGGTGG
TGCCGGTGCCCCGGGCGCTGGGGGCAATAGGGGTCCCCGCGGTGGGCTGA
CGATGATGGTGCGCCACCTCCTCCACCCCCGCCCCGTCGTCCCCGCCAAA
GGGCACGCGTTCCGCGGCGGCGGCGGCGGCGGTCGCCCTGGCGGGCGCCC
CGGTGGTCGCCCCGATGCCCACCACCCCAGTTCCCGCCGCGGCGTCCACC
CCCCCCCCCCCCCCCCACCACCACCACCACCACCACCACGCGCGCGGGTG
TGGGAATGGGAAGGGAGGGCCCGGTGTTCACAACGCTCCCCGCCCCGAGA
TGGTGAGGACGAGTCAGTGCGGCGGTGGGTGTGGCGGGGGTCGCCAGCTG
CAGCAGCACGGGTGCCAGTCGGGGTGACCCGTCACTCGTCGTCACGACCC
TAG
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