mRNA_P-littoralis_Contig10.28.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig10.28.3
Unique NamemRNA_P-littoralis_Contig10.28.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig10.28.3 vs. uniprot
Match: D7FQB2_ECTSI (Similar to ATP binding / alanine-tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB2_ECTSI)

HSP 1 Score: 322 bits (824), Expect = 2.480e-104
Identity = 177/290 (61.03%), Postives = 203/290 (70.00%), Query Frame = 1
Query:  289 VYMLDTYLMVYEAKVLGVVEDETQGPAVILDKTIFHPQGGGQPSDEGNIVCGPSAMKVHKVRDVGGGVIHHYYGAISGSSFRPPETGQPASLALDSAKRLRHAALHSAGHAVDRAVVEAVGTGVFSPLKGYHFDDSPYVEYRGKLPEGLDKEAFIERLNGELDKVVTADVVTVTKIVDQVKSKAHDNGAAPSPEERAGEGXXXXXXXXXXXV---------------------DKYGAATRIVEVAGLSCPCGGTHVGSTRELEGVRATKVKAKKGALRVSYSLVSPRSS 1095
            +Y+ DTYLM  EA VLGVVED++QG A+ILD+TIFHPQGGGQPSDEG I CG   + V KVRDVGG VI+HY G +SG+     E G+PASLALDSAKRLRHAALHSAGHAVD+AVV AVG GVFSPLKGYHFDDSPYVEYRG LP GL+K+AFIE+ N ELDK+V A++ T+ K+ DQ       + ++ S +E    G           V                      KYGAATR V VAGLSCPCGGTHV STRE+EGVR TKVKAKKG LRVSY+L    SS
Sbjct:    1 MYLQDTYLMTSEATVLGVVEDDSQGSAIILDRTIFHPQGGGQPSDEGTITCGDCTVPVSKVRDVGG-VIYHY-GTMSGTPQPRLEAGRPASLALDSAKRLRHAALHSAGHAVDKAVVGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVMANMETMVKMADQEHGDEAPSSSSSSAQEGPSRGAAGRGREEVTVVAERGGRGGRGKVPASSTAAAATKYGAATRTVTVAGLSCPCGGTHVRSTREMEGVRITKVKAKKGTLRVSYTLAPSSSS 288          
BLAST of mRNA_P-littoralis_Contig10.28.3 vs. uniprot
Match: A0A7S1TVS7_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVS7_9STRA)

HSP 1 Score: 166 bits (419), Expect = 3.990e-44
Identity = 115/281 (40.93%), Postives = 152/281 (54.09%), Query Frame = 1
Query:  280 TERVYMLDTYLMVYEAKVLGVV-------EDETQGPAVILDKTIFHPQGGGQPSDEGNIVCGPSAMKVHKVRDVGGGVIHHYYGAISGSSFRPPET---GQPASLALDSAKRLRHAALHSAGHAVDRAVVEAVGTGVFSPLKGYHFDDSPYVEYRGKLPEGLDKEAFIERLNGELDKVVTADVVTVTKIVDQVKSKAHDNGAAPSPEERAGEGXXXXXXXXXXXVDKYGAAT-RIVEVAGL-SCPCGGTHVGSTRELEGVRATKVKAKKGALRVSYSLVSP 1086
            TER+Y+LDTYL   +A  L V        +D T   AVILD+T+FH QGGGQP+D G I    +  +V  VR  G  V  H++G+  G     P     G    L++D  KR+ HA  HSAGHA+D AV    G    +  KGYHF D PYVEY GKL   + KE  ++ LN ++ +V++ D+ T    +   ++KA    A  +P+                      A T R+V VAG  +CPCGGTHV ST EL GV  TKVK+KKG ++VSYS+  P
Sbjct:   28 TERLYLLDTYLFEADAAALSVEALEPNPKDDATH--AVILDRTVFHAQGGGQPADLGTITADGAVFEVTGVRSAGDAV--HHFGSFRGGDGDAPAAFAAGAAVHLSVDEVKRVAHARCHSAGHALDVAVARIFGEDWVAG-KGYHFLDGPYVEYIGKLAPEM-KETIVDTLNEKIAEVLSEDIPTEVLYLSPEEAKA----ACGTPD---------------ADFSHITAPTIRVVTVAGGGTCPCGGTHVRSTAELGGVTVTKVKSKKGRIKVSYSVTPP 283          
BLAST of mRNA_P-littoralis_Contig10.28.3 vs. uniprot
Match: A0A835Z9X7_9STRA (Alanyl-tRNA editing protein AlaX-M-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9X7_9STRA)

HSP 1 Score: 163 bits (413), Expect = 5.470e-44
Identity = 104/267 (38.95%), Postives = 139/267 (52.06%), Query Frame = 1
Query:  280 TERVYMLDTYLMVYEAKVLGVVEDETQGPAVILDKTIFHPQGGGQPSDEGNI-VCGPSAMKVHKVRDVGGGVIHHYYGAISGSSFRPPETGQPASLALDSAKRLRHAALHSAGHAVDRAVVEAVGTGVFSPLKGYHFDDSPYVEYRGKLPEGLDKEAFIERLNGELDKVVTADVVTVTKIVDQVKSKAHDNGAAPSPEERAGEGXXXXXXXXXXXVDKYGAATRIVEVAGLSCPCGGTHVGSTRELEGVRATKVKAKKGALRVSYSL 1077
            TER+Y+ DTY     A+V+ V +D     AV+LD+T+FHPQGGGQP+D G + +    A  V  V+   G VI H+     G   +  +TG     ++D  +RL+ A LHSAGHA+D AV  A G     P KGYHF+D PYVEY G L    D+   +++LN EL  ++ A + T  +                                      +  A  R+V V G +CPCGGTHV ST EL G+R TK KAK G LRVSY++
Sbjct:    4 TERLYLQDTYSHACSARVVEVRDD-----AVVLDRTVFHPQGGGQPTDRGTLKIHNEVAFVVANVK-ADGDVILHF--GQHGEGDKKLQTGDEVEASIDLQRRLQLARLHSAGHALDAAVRNA-GFAALKPTKGYHFEDGPYVEYEGALSAD-DRATLVDKLNAELALLIEAAIETAVR--------------------------------------QSEAGLRVVSVGGCACPCGGTHVRSTAELRGLRVTKAKAKSGRLRVSYTI 222          
BLAST of mRNA_P-littoralis_Contig10.28.3 vs. uniprot
Match: A0A2D9ITL3_9FLAO (AA_TRNA_LIGASE_II_ALA domain-containing protein n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A2D9ITL3_9FLAO)

HSP 1 Score: 156 bits (395), Expect = 3.330e-41
Identity = 102/267 (38.20%), Postives = 141/267 (52.81%), Query Frame = 1
Query:  280 TERVYMLDTYLMVYEAKVLGVVEDETQGPAVILDKTIFHPQGGGQPSDEGNIVCGPSAMKVHKVRDVGGGVIHHYYGAISGSSFRPPETGQPASLALDSAKRLRHAALHSAGHAVDRAVVEAVGTGVFSPLKGYHFDDSPYVEYRGKLPEGLDKEAFIERLNGELDKVVTADVVTVTKIVDQVKSKAHDNGAAPSPEERAGEGXXXXXXXXXXXVDKYGAATRIVEVAGLS-CPCGGTHVGSTRELEGVRATKVKAKKGALRVSYSL 1077
            TE +Y+ DTYL   EA+   ++ D+  G A++LDKTIF+PQGGGQPSD G IVC     +V KVR    G++ HY    SG        G    L +D+ KRL HA +HSAGH +D AV  ++G    SP KG+HF + PYVEY G L    D  ++I  L  +++++V  D+                 G   S E+ A +G               G + R+V   G   C CGGTHV ST+E+  +   K+K KKG  R++Y+L
Sbjct:    2 TELIYLQDTYLSTLEARAQELICDDF-GEALVLDKTIFYPQGGGQPSDSGEIVCDTFVFEVSKVRLTNDGLVMHYGEFSSGGWVE----GLAVELKIDAVKRLVHAKVHSAGHLLDCAV-SSLGLNQLSPTKGFHFPEGPYVEYEGILE---DSSSWIAPLEKKINELVLQDLEI--------------QGYLLSAEQAANQGVWAPE----------GKSARVVSFDGFQGCGCGGTHVSSTKEIGELIIRKIKVKKGVTRIAYAL 235          
BLAST of mRNA_P-littoralis_Contig10.28.3 vs. uniprot
Match: A0A6H5JDI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDI3_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 4.380e-40
Identity = 72/96 (75.00%), Postives = 83/96 (86.46%), Query Frame = 1
Query:  547 GQPASLALDSAKRLRHAALHSAGHAVDRAVVEAVGTGVFSPLKGYHFDDSPYVEYRGKLPEGLDKEAFIERLNGELDKVVTADVVTVTKIVDQVKS 834
            G+P SLALDSAKRLRHA LHSAGHAVD+AV  AVG GVFSPLKGYHFDDSPYVEYRG LP GL+K+AFIE+ N ELDK+V A++ TV K+ DQV++
Sbjct:   12 GRPVSLALDSAKRLRHAVLHSAGHAVDKAVAGAVGAGVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVVANMETVVKMADQVRA 107          
BLAST of mRNA_P-littoralis_Contig10.28.3 vs. uniprot
Match: A0A7S2G7E6_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2G7E6_9EUKA)

HSP 1 Score: 150 bits (379), Expect = 1.570e-38
Identity = 103/274 (37.59%), Postives = 140/274 (51.09%), Query Frame = 1
Query:  274 PPTERVYMLDTYLMVYEAKVLGVVED-ETQGPAVILDKTIFHPQGGGQPSDEGNI-VC-GPSAMKVHKVRDVGGGVIHHYYGAISGSSFRPPETGQPASLALDSAKRLRHAALHSAGHAVDRAVVEAVGTGVFSPLKGYHFDDSPYVEYRGKLPEGLDKEAFIERLNGELDKVVTADVVTVTKIVDQVKSKAHDNGAAPSPEERA--GEGXXXXXXXXXXXVDKYGAATRIVEVAGLSCPCGGTHVGSTRELEGVRATKVKAKKGALRVSYSLV 1080
            PPTE +Y  DTYL    A VL +  D +  G +V LD+T FHPQGGGQP+D+G I  C G     V  V     GV+ H      G      + G   +  +D A R ++A +HSAGH +D A+  A       P KGYHF    YVEY GKL E  +++A + +L   +D+++   + T    VD  +   H    A  PE+RA  G+G                   R+V V G  CPCGGTHV  T+EL+GV+   VK+K    R+SYS++
Sbjct:   18 PPTEALYQTDTYLFTASATVLAIGPDAKGTGWSVKLDRTCFHPQGGGQPADQGTISACEGGGTFAVSMVSKDKAGVVSH-----DGPEEPSLKVGDSVTCTVDEASRRKNARVHSAGHLIDVAMTNAKCN--LRPTKGYHFTPGSYVEYDGKL-EAAERDALLPKLQASMDELIGQALPTKVLTVDASELGQHCPPNA-LPEDRALWGKGW-----------------VRVVSVGGQGCPCGGTHVYDTKELKGVKVEAVKSKGKITRISYSMI 265          
BLAST of mRNA_P-littoralis_Contig10.28.3 vs. uniprot
Match: A0A4D9CZR6_9STRA (AA_TRNA_LIGASE_II_ALA domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZR6_9STRA)

HSP 1 Score: 147 bits (372), Expect = 2.490e-37
Identity = 108/295 (36.61%), Postives = 152/295 (51.53%), Query Frame = 1
Query:  271 FPPTERVYMLDTYLMVYEAKVLGV--VEDETQGPA-------VILDKTIFHPQGGGQPSDEGNIVCGPSAMK--VHKVRDVGGGVIHHYYGAIS--------GSSFRPPETGQPASLALDSAKRLRHAALHSAGHAVDRAVVEAVGTGVFSPLKGYHFDDSPYVEYRGKLPEGL-DKEAFIERLNGELDKVVTADVVTVTKIVDQVKSKAHD------NGAAPSPEERAGEGXXXXXXXXXXXVDKYGAATRIVEVAGLSCPCGGTHVGSTRELEGVRATKVKAKKGALRVSYSL 1077
            +P T+R Y+ DTYL    + +L V  V  +T   +       ++  +T+FHPQGGGQPSD G +V G + +   V  VR VG   I ++YG           G+   P   G+   L +D+A+R  HA LHSAGHA+D AV+  +G  +  P KGYHF+D P VEY+GKLP      E  IE L  ++ +++  D+ T  ++    K++A        N  A  PEE                     A  R+V V G  CPCGGTHV ST+EL GV  T++K KK   ++SY +
Sbjct:    6 YPTTQRRYLNDTYLYDISSTILAVEPVPPDTSAGSNKMPYFGLVTAETVFHPQGGGQPSDVGRVV-GENGVTFFVDNVR-VGENAIIYHYGIFKHEMSENEDGARCVPFRAGEKVKLEIDAARRRLHARLHSAGHALDVAVLR-LGLEL-RPTKGYHFEDHPSVEYQGKLPADKGSSERLIEALTLKIQELIEEDIAT--ELYSTSKAEAASMLSGGVNDVAHFPEE---------------------AQVRLVSVGGNICPCGGTHVKSTKELGGVEITRIKTKKNVTKISYRI 273          
BLAST of mRNA_P-littoralis_Contig10.28.3 vs. uniprot
Match: A0A7S2WSC3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSC3_9STRA)

HSP 1 Score: 147 bits (371), Expect = 5.160e-37
Identity = 100/268 (37.31%), Postives = 137/268 (51.12%), Query Frame = 1
Query:  280 TERVYMLDTYLMVYEAKVLGVVEDETQGPA-VILDKTIFHPQGGGQPSDEGNIVCGPSAMKVHKVR-DVGGGVIHHYYGAISGSSFRPPETGQPASLALDSAKRLRHAALHSAGHAVDRAVVEAVGTGVFSPLKGYHFDDSPYVEYRGKLPEGLDKEAFIERLNGELDKVVTADVVTVTKIVDQVKSKAHDNGAAPSPEERAGEGXXXXXXXXXXXVDKYGAATRIVEVAGLSCPCGGTHVGSTRELEGVRATKVKAKKGALRVSYSL 1077
            T ++Y+ DTY     A V+ V      G   VILDKT+FHPQGGGQP+D+G +       +V  V+ D   G++ H+    SGS     E G      +D   R   + LHSAGHA+D A+     +G+ +P KGYHF D+PYVEY G L    +K++  ERL  EL  ++   V +    +   +      GA  S                   +   GA  R+V V G  CPCGGTHVG+  ELE V  T++KAKKG ++VSY +
Sbjct:   48 TNKLYLADTYRTETPAVVVEVEPVPESGDLKVILDKTVFHPQGGGQPADKGVLSFPGGEFRVSMVKEDRSTGLVFHFGSMGSGSGSL--EAGTEVDARIDPEWRSVCSRLHSAGHAMDAAMTALAVSGL-TPTKGYHFPDAPYVEYAGTLA-AEEKDSLQERLTNELQSIIEKQVPSKVVYLSAPEVLELCPGANVS-------------------IFPEGAMIRVVNVGGCWCPCGGTHVGNASELERVTVTRIKAKKGTVKVSYEV 292          
BLAST of mRNA_P-littoralis_Contig10.28.3 vs. uniprot
Match: L8GVN5_ACACA (Threonine/alanine tRNA ligase subfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GVN5_ACACA)

HSP 1 Score: 144 bits (362), Expect = 4.380e-36
Identity = 107/287 (37.28%), Postives = 150/287 (52.26%), Query Frame = 1
Query:  280 TERVYMLDTYLMVYEAKVLGVVEDET-QGPA-------VILDKTIFHPQGGGQPSDEGNIVCGPSAMK--VHKVR-DVGGGVIHHYYG-AISGSSFRPPETGQPASLALDSAKRLRHAALHSAGHAVDRAVVEAVGTGVFSPLKGYHFDDSPYVEYRGKLPEGLDKEAFIERLNGELDKV------VTADVVTVTKIVDQVKSKAHDNGAAPSPEERAGEGXXXXXXXXXXXVDKYGAATRIVEV-AGLSCPCGGTHVGSTRELEGVRATKVKAKKGALRVSYSLVS 1083
            TE+ Y  DTY     A V+ V E    +G A       V+LD+TIFHPQGGGQP D G +V   + +K  V +VR +   GVI H    A +G++F   + G    L +D AKR  HA LHSAGH +D+AV          P KGYHF D+PYVEY+G       +++ ++RL  E +++      VT  VV   + V+++   A D+GA P+                           R+V V A L CPCGGTHV +T E+  +   K+ AKKG +R+SY+L++
Sbjct:    6 TEQAYWEDTYRFRDTAHVVQVAEHPPPRGSAAGASYFAVVLDRTIFHPQGGGQPFDTG-VVASAAGVKFTVSEVRANREDGVIQHIGTFAEAGTTF---QAGDEVELQIDEAKRRLHARLHSAGHLLDKAVANLFPEYNLIPDKGYHFADAPYVEYKGTFVPADKRQSALKRLEDECNRLIAEGSEVTVQVVHSKEEVERLCGSASDSGANPT------------------------EPVRVVTVCAPLGCPCGGTHVQNTGEIGRIAIPKMSAKKGVVRISYTLLA 264          
BLAST of mRNA_P-littoralis_Contig10.28.3 vs. uniprot
Match: A0A7S3Z8T4_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z8T4_9EUKA)

HSP 1 Score: 140 bits (354), Expect = 6.790e-35
Identity = 98/272 (36.03%), Postives = 139/272 (51.10%), Query Frame = 1
Query:  274 PPTERVYMLDTYLMVYEAKVLGVVEDETQGPAVILDKTIFHPQGGGQPSDEGNIVCGPSAMKVHKVRDVG--GGVIHHYYGAISGSSFRPPETGQPASLALDSAKRLRHAALHSAGHAVDRAVVEAVGTGVFSPLKGYHFDDSPYVEYRGKLPEGLDKEAFIERLNGELDKVVTADVVTVTKIVDQVKSKAHDNGAAPSPEERAGEGXXXXXXXXXXXVDKYGAATRIVEVAGLS--CPCGGTHVGSTRELEGVRATKVKAKKGALRVSYSL 1077
            P T  +YM DTY    EAKV+ +V  E Q   VI D+TIFHPQGGGQPSDEG +  G +  +V KV      G ++H   G     SFR    G   S  ++  KR+ HA +HSAGH +D A+ + +G     P KGYH+    YVEY GK+ +  +++A + +L   +D+++ +D+ T  ++ + +                                       R V VAG+   CPCGGTHV ST E++ +R TK+K  K   RVSYS+
Sbjct:   45 PSTNPLYMDDTYRNKAEAKVIQIVSGE-QESIVITDQTIFHPQGGGQPSDEGTMTVGSNNFEVKKVTKAKETGAILHA--GVFRRGSFRE---GDVVSQEVNMTKRIFHARIHSAGHLLDVAMAK-IGEQR-KPGKGYHYPQGAYVEYIGKI-DVKERDAIVTKLQAAIDELIKSDIATKVELKNNI---------------------------------------RHVSVAGVEEGCPCGGTHVRSTGEIKSMRVTKLKNNKKNARVSYSV 268          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig10.28.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQB2_ECTSI2.480e-10461.03Similar to ATP binding / alanine-tRNA ligase n=1 T... [more]
A0A7S1TVS7_9STRA3.990e-4440.93Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
A0A835Z9X7_9STRA5.470e-4438.95Alanyl-tRNA editing protein AlaX-M-like protein n=... [more]
A0A2D9ITL3_9FLAO3.330e-4138.20AA_TRNA_LIGASE_II_ALA domain-containing protein n=... [more]
A0A6H5JDI3_9PHAE4.380e-4075.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2G7E6_9EUKA1.570e-3837.59Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A4D9CZR6_9STRA2.490e-3736.61AA_TRNA_LIGASE_II_ALA domain-containing protein n=... [more]
A0A7S2WSC3_9STRA5.160e-3737.31Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
L8GVN5_ACACA4.380e-3637.28Threonine/alanine tRNA ligase subfamily protein n=... [more]
A0A7S3Z8T4_9EUKA6.790e-3536.03Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig10contigP-littoralis_Contig10:166081..171189 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQB2
PFAMstRNA-synt_2c,tRNA_SAD
Model size1425
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons6
Evalue5.9e-107
EggNOG OGsCOG2872@1|root,2S23F@2759|Eukaryota
DescriptionThreonyl and Alanyl tRNA synthetase second additional domain
Cds size1020
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig10.28.3prot_P-littoralis_Contig10.28.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig10 166408..171111 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789328.0173473-UTR-P-littoralis_Contig10:166080..1664071680789328.0173473-UTR-P-littoralis_Contig10:166080..166407Pylaiella littoralis U1_48UTRP-littoralis_Contig10 166081..166407 -
1680789328.0969536-UTR-P-littoralis_Contig10:171111..1711891680789328.0969536-UTR-P-littoralis_Contig10:171111..171189Pylaiella littoralis U1_48UTRP-littoralis_Contig10 171112..171189 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789328.03708-CDS-P-littoralis_Contig10:166407..1666681680789328.03708-CDS-P-littoralis_Contig10:166407..166668Pylaiella littoralis U1_48CDSP-littoralis_Contig10 166408..166668 -
1680789328.0488977-CDS-P-littoralis_Contig10:167687..1677651680789328.0488977-CDS-P-littoralis_Contig10:167687..167765Pylaiella littoralis U1_48CDSP-littoralis_Contig10 167688..167765 -
1680789328.0588677-CDS-P-littoralis_Contig10:168117..1683331680789328.0588677-CDS-P-littoralis_Contig10:168117..168333Pylaiella littoralis U1_48CDSP-littoralis_Contig10 168118..168333 -
1680789328.0703666-CDS-P-littoralis_Contig10:168940..1690561680789328.0703666-CDS-P-littoralis_Contig10:168940..169056Pylaiella littoralis U1_48CDSP-littoralis_Contig10 168941..169056 -
1680789328.0786457-CDS-P-littoralis_Contig10:169899..1700041680789328.0786457-CDS-P-littoralis_Contig10:169899..170004Pylaiella littoralis U1_48CDSP-littoralis_Contig10 169900..170004 -
1680789328.0890045-CDS-P-littoralis_Contig10:170867..1711111680789328.0890045-CDS-P-littoralis_Contig10:170867..171111Pylaiella littoralis U1_48CDSP-littoralis_Contig10 170868..171111 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig10.28.3

>prot_P-littoralis_Contig10.28.3 ID=prot_P-littoralis_Contig10.28.3|Name=mRNA_P-littoralis_Contig10.28.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=340bp
MSSGSRLTVAKTARYSVFQQHGAASLASQHTPKKQTPKILVGVNYDKEGS
STPPPPPPPPPPPRFPPTERVYMLDTYLMVYEAKVLGVVEDETQGPAVIL
DKTIFHPQGGGQPSDEGNIVCGPSAMKVHKVRDVGGGVIHHYYGAISGSS
FRPPETGQPASLALDSAKRLRHAALHSAGHAVDRAVVEAVGTGVFSPLKG
YHFDDSPYVEYRGKLPEGLDKEAFIERLNGELDKVVTADVVTVTKIVDQV
KSKAHDNGAAPSPEERAGEGGRGGGGGGGGGVDKYGAATRIVEVAGLSCP
CGGTHVGSTRELEGVRATKVKAKKGALRVSYSLVSPRSS*
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mRNA from alignment at P-littoralis_Contig10:166081..171189-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig10.28.3 ID=mRNA_P-littoralis_Contig10.28.3|Name=mRNA_P-littoralis_Contig10.28.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=5109bp|location=Sequence derived from alignment at P-littoralis_Contig10:166081..171189- (Pylaiella littoralis U1_48)
CGAGAGCCCGAGAGCAGAGGCGAGCAGCACTTTTTGCTACCTCCCGTCGT CCGTCGCCACTACCGGGGGTTAAAATCTATGTCCTCTGGATCACGACTCA CCGTTGCCAAAACAGCAAGGTATTCTGTGTTCCAGCAGCATGGCGCGGCC AGTCTTGCGTCTCAGCATACTCCAAAAAAACAGACACCTAAAATATTAGT CGGAGTCAACTACGACAAGGAGGGTAGTTCGACACCACCACCACCACCAC CACCACCACCACCACCGCGTTTTCCCCCAACCGAGAGAGTCTACATGCTC GATACATACCTTATGGTGTACGGTGAGAACTGCTTTAGCGCTGTTGGTGC GGAAATTACGTTGAAGATGATGACCATCATCATGCATTAATCCGGTCGCC CCGGTGGACTAGTGGTCCCCTCTTAACCACTAGATGCAAAGGAACGGGGG TTCGATTCCCGGTGAATGTGTCCCTTTGCTACTTTGAAAGCGGCTATGCT GTTAGTAAAAGCAGATTCGGCTTCGCCGACGAGGGTAGGGACTGCGGATC CCTGCTCGCGAGAAAAAATCTCACGCATGTACCGCAGAAGGAAGGTGGGG GTAACTCCTCCTGTGTGACCCCGTCCATGGGCCTAGCCTGTAGTTTGAAC CGCAAGGTGCAGACTAGTGTGCCAGAGAATATGGGATGACAACACACACA TTACACATTTGGCTTTTCGCTTTGACACAGCTACTGCTGTGTATACGAAG TACGACGCTGCCACCGAGTATGATGACGGTCCGCGGCGATACTCCCGCAC ACACGATCATACTATACTCGTAGAGGGAACAGGCAGCGGTTAGTGATAGG AGCAACATATCATCATTGTTCTATGCCGGTGCGGCCGTGTATGGTTATAA ATATACTTCGTATGTATCTGACTGAAATAGATTTGGAACGCACACTTCGT ACTGTACATGACACAGCAAGATATCGTCTATACTCCGAGTAATGAACGGG TGGCACGCGTCTTGCATTTCAGAGTCTGTGTGATATTTGAGGTTGAATTT ATCAATTTCTGGCAATGATATTTATATTTACGTTCATTATACTCGCGAGT GTTTCAGTCACATCGATCGCGTCGCGGTCTTTCTTTCTGCACGTCTGTTT GTTCGTTGTTTGTTTCGCCCCCTTCATCGGGACAGAGGCCAAAGTTTTAG GCGTGGTCGAAGACGAGACGCAAGGGCCAGCGGTCATACTAGACAAAACA ATTTTTCACCCCCAGGGCGGGGGGCAGCCAAGCGATGAAGGTAGGTGAGC TCATGACAAGCCGCGCGGCAGAAGAATACATATGGAAAGGATTTACTACT CGGTTGTTGTTGTGGTCGGGTGTGGTGCCGTTCCAGTAATGATGTAGTGC ACAACCATGCAAAAGAATAGCACGCATCGTGAAAAAACGGTTCACCATAT ATTCACGCTGTGACTCATTCGACTTTTTGCGTGCCATCCTCGCATCTACA GAAGAGTACGCACAAGCCAAGGACTCCATGCATACCATACAAGAACCGCC AGAGACCCAAAACCCAGGCTTTCTTCCTAGATACCGTAGCGCGGACGAAG ATAGCCTATGCAGCGTTGTGTTCCTTCCGTGTACAGTAGACCCTGCTACT GCTATTGCTGTGCAAGAGAGTTGTTGTTCTGCAAAAGAGAGCGCTGACGG ACCATGTGGCCCGCCAGAGCCCCGTCCCATGCCGTTCACAAATTTGAAGT AACCCCGAGCTTAGTGTGTAAACAAACTATACAACCCTTCTCTGCGTTGT ACCCGGTATGTGCGTATGATGTTATGATTGGTGTGTAATTGAACAAGGCT GCTGTACATACGGCAATAGTGCCTAGTTCTCCCGCCACCACTCACTGCTG TTGCTGCTGCCGCTGCTGCTGCTGATGCTGTCGGGCACGGAAAGCTTTTC ACGATGGACGTCCCCATAATGACTACACAACGCCCCGGGCTGCGACACGT GCCACGCACGCAAGGCACATGAGATGCCACAAGAACAGCAGCATCACACG CGCGAAGCGCACAGACCCCCGCTTTCCGACCCACAAGCAAGCATGACGAG CGTCTGTGAATACCGACTACACAATGAAAACAGGAAATATCGTCTGCGGG CCGTCCGCCATGAAGGTGCACAAAGTCAGAGATGTTGGGGGCGGCGTGAT CCACCATTACTACGGAGCAATCTCGGGATCGTCCTTTCGGCCGCCGGAGG TGAGCGAGCGCCACGCTGCTACGCGTTGTTGAGCGTAAGAGCCAGTAGCA GCAGTTCAACACGCGAAGCCGATGACAGATGGCGTGTGTACATCTTGTGG TATAATGCCACATGCATGCTGTCAGCGTAAACAACTAAAAAAAAATCTTT GATCGCGCGGTGTTGTATGTTGTAGGTGAGCCCTCGAGCTCTCGCTGAGG TGGTAGAAAAAATCACAAATATATGTTTGGATGGGCCAATCCTCGTGTGT GCGTACCCGAACCCACCCACCCATCCAACCACCTCCCCATGTACTGGTAC TCGCGTACTTTTTGTACGTAAAATAGTGTTTGTGGTTCTTTTTTTCTTCT TCTACGAGTCATACCGCCGTGCACACCACTAAAACCTCTCAACGAAGGAC GGTCCTGGCCACTATCACCGGCCCATTCGTTGGTTACGCCGACCGGACCC TTTATGATCATCTCCCCTCCACCACCACGACCACCACGACCACTGCCACC ACCGTTCGCTTCTTGTTTTTACTTAAAAGTTGTTCTTGGTGATCTTGTTC CTCTTCTTGTTCTTATTCTCCTTATTTGTTCTCCTTATTTGTTCTGAGAG CTGCAGACGGGTCAGCCGGCGTCGCTGGCGTTGGACAGCGCCAAGCGACT GCGGCACGCGGCGCTGCACTCGGCGGGGCACGCCGTCGACAGGGCCGTGG TGGAAGCGGTGGGCACGGGCGTGTTCTCGCCGTTGAAGGGCTACCACTTC GACGACTCGCCGTACGTCGAGTATCGGGGAAAGCTGCCCGAAGGCCTGGA CAAGGAAGCCTTCATCGAAAGGGTACGATATCAATACTTGACGATGAAAA TCATTCAACACAAACAAAATAATGTTTGTGCTCGCTAGTTGTTGTTATAC TTGCTCCTGTACTTCCGCATATTCACACATACTTTGTGTACATTCGTACC TAGTATAGAGAGTGCGAACGGTTGGTACAGGTATCGATTAGCACGTGGTT GTGCTGCTCTGGTTTCTGTTTCGTATGGGTCTGTAAGAAAAAACGGGAGC CAGCACAGCTGCGGCGGAATCTAGTGATACACTGACGGTTCATCATTCGA AAACCGCAGCCAACCCGCTCCTTCCATGTGTGTCGCCCGTGCGCCGCGTT CGTCAACACGCCGATGAACCGCAGTTGAACGGCGAGCTTGACAAGGTCGT GACGGCGGATGTGGTGACTGTGACAAAAATTGTCGATCAGGTCAAAAGCA AGGTGGGGGAGGGGGTAAGAGAGAGAGAGAAAAGGCCCGCAATTAATTGA TTGGTCAATTTTGTTTTAAAGGAGAATTCTGATTGGTTGAAAAATTGAAT GTCCTTGTTCCGATTTTGGGGGGGGGGGGACAGGGGAGCCGTGTATGATC CACGCAACCTTACGTACATGACGGTGGGTGGCGTCGTCTGCGAAGTACTT CTACCCACAACACTGCTTGTGAACAACACCACGATGATACATACATACGT GCAGTGCCGACCCGTCACAACATCAGTGACTGCCTGAGCCTCGTTGTCTG ATTCGCGGTGAAGATTGATTCTCGGCGAAGATTGGTTTTCTTATTCGCGG CGAAGATTGTCATGGGCCTTCTAGTGGACGTAGTGTTTCATCCGCTGGGA CTGATTGAACACTTTTGCTTCATTCTTTTTGGAAATATCGGCCTCAGATT CTTGAAGTTGTAGGCCAGTACTGCTTGTACACAGCAGAACAACCTTCACG AGTGGGCTGCCGGTTGAATAATTCCATACCAACACACGAATAAATGCGGG TGAAAGGGGGGGACTGACCTCGTGTTGAGGACTGACTTTTGTTTTCGCCG CTTTAGCTGGGACTGAAAAATAAGGAGTGCCTGTGTTACGTACAAGGTAC ACCGTACGTCGTGATTGCATACATGTGCTGTTTCGTCTGCTTTTCAAACA GAAAAGGCCACCTTCCCTAGGAAACGACTGTTGAACGATGATGACGAAGA AAGGTCCAGGTTTGTTCATTCCTGGAGGCGTGTGCACCATGCTTTATCGA ACGAAGCCAGATTGGGCGAAGTACGCCGTGACTGGAAAAATGCGATGCCC CGCTCTCGAGGGTTTTGGCGCCTTCTCACACAATACTGCTGTACCAGAAG TTTGTTTGCCGGGATCGCGTTTATGGAAACAGGGAACGAGTGGGGAGGCT TTTTTCGCTGCTCAACTCCAGCAAAACACGGTGTGCCTGGTCGTCTTTGC CATTTCTCGCGCTTGACCCAGGCTCACGATAACGGTGCGGCTCCATCACC AGAAGAGAGAGCAGGCGAAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAG GGGGGGTGGACAAGTATGGCGCCGCGACGCGTATCGTAGAGGTGGCTGGC CTCTCGTGCCCTTGCGGCGGCACTCACGTGGGGAGCACGCGAGAGCTAGA GGGTGTGCGCGCGACCAAAGTCAAGGCAAAGAAGGGCGCTCTTCGCGTCA GCTACTCTCTGGTTTCTCCTCGCAGCAGTTAGTTAATACCGCTAAAGACA TCATCCAAGTACCCGATTGTTTCTGCACGCGTAACAGTAATTTGCGTGTG ATTTGGAGCGTCTTGATCGAGGATATGGCTCCTTCATCGATGACAACCGG AAAAAAGTCGGGACGGGTGTGCGCAACGGTGTACTACCTGTTCCAAACCG CGGACGGCGGTACGCCGGGGGGGCTGGGAAGGGAGGGGCGATTCACGACG AAGCTCCTGCTCTCTCTCCTTCCCTCCCTGTTGATGTTCGATGGTTTCCT CAGCCAGCATGATAAAAAATGATGACTATTCTCGGTCAAGTCTCGACCTC CTTCCCGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig10:166081..171189-

>mRNA_P-littoralis_Contig10.28.3 ID=mRNA_P-littoralis_Contig10.28.3|Name=mRNA_P-littoralis_Contig10.28.3|organism=Pylaiella littoralis U1_48|type=CDS|length=1020bp|location=Sequence derived from alignment at P-littoralis_Contig10:166081..171189- (Pylaiella littoralis U1_48)
ATGTCCTCTGGATCACGACTCACCGTTGCCAAAACAGCAAGGTATTCTGT
GTTCCAGCAGCATGGCGCGGCCAGTCTTGCGTCTCAGCATACTCCAAAAA
AACAGACACCTAAAATATTAGTCGGAGTCAACTACGACAAGGAGGGTAGT
TCGACACCACCACCACCACCACCACCACCACCACCACCGCGTTTTCCCCC
AACCGAGAGAGTCTACATGCTCGATACATACCTTATGGTGTACGAGGCCA
AAGTTTTAGGCGTGGTCGAAGACGAGACGCAAGGGCCAGCGGTCATACTA
GACAAAACAATTTTTCACCCCCAGGGCGGGGGGCAGCCAAGCGATGAAGG
AAATATCGTCTGCGGGCCGTCCGCCATGAAGGTGCACAAAGTCAGAGATG
TTGGGGGCGGCGTGATCCACCATTACTACGGAGCAATCTCGGGATCGTCC
TTTCGGCCGCCGGAGACGGGTCAGCCGGCGTCGCTGGCGTTGGACAGCGC
CAAGCGACTGCGGCACGCGGCGCTGCACTCGGCGGGGCACGCCGTCGACA
GGGCCGTGGTGGAAGCGGTGGGCACGGGCGTGTTCTCGCCGTTGAAGGGC
TACCACTTCGACGACTCGCCGTACGTCGAGTATCGGGGAAAGCTGCCCGA
AGGCCTGGACAAGGAAGCCTTCATCGAAAGGTTGAACGGCGAGCTTGACA
AGGTCGTGACGGCGGATGTGGTGACTGTGACAAAAATTGTCGATCAGGTC
AAAAGCAAGGCTCACGATAACGGTGCGGCTCCATCACCAGAAGAGAGAGC
AGGCGAAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGGGGGGTGGACA
AGTATGGCGCCGCGACGCGTATCGTAGAGGTGGCTGGCCTCTCGTGCCCT
TGCGGCGGCACTCACGTGGGGAGCACGCGAGAGCTAGAGGGTGTGCGCGC
GACCAAAGTCAAGGCAAAGAAGGGCGCTCTTCGCGTCAGCTACTCTCTGG
TTTCTCCTCGCAGCAGTTAG
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