mRNA_P-littoralis_Contig10.272.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig10.272.1
Unique NamemRNA_P-littoralis_Contig10.272.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig10.272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig10contigP-littoralis_Contig10:998351..999576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1043
Hectar predicted targeting categoryother localisation
Exons2
Cds size540
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789325.8724542-UTR-P-littoralis_Contig10:998350..9986161680789325.8724542-UTR-P-littoralis_Contig10:998350..998616Pylaiella littoralis U1_48UTRP-littoralis_Contig10 998351..998616 +
1680789325.907427-UTR-P-littoralis_Contig10:999339..9995761680789325.907427-UTR-P-littoralis_Contig10:999339..999576Pylaiella littoralis U1_48UTRP-littoralis_Contig10 999340..999576 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789325.8904452-CDS-P-littoralis_Contig10:998616..9986501680789325.8904452-CDS-P-littoralis_Contig10:998616..998650Pylaiella littoralis U1_48CDSP-littoralis_Contig10 998617..998650 +
1680789325.8988273-CDS-P-littoralis_Contig10:998833..9993391680789325.8988273-CDS-P-littoralis_Contig10:998833..999339Pylaiella littoralis U1_48CDSP-littoralis_Contig10 998834..999339 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig10.272.1prot_P-littoralis_Contig10.272.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig10 998617..999339 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig10.272.1

>prot_P-littoralis_Contig10.272.1 ID=prot_P-littoralis_Contig10.272.1|Name=mRNA_P-littoralis_Contig10.272.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=180bp
MGIISSPCFLFPAIVQQYILGGEICVLPTATYIAVTATYIAVHKRAAVTA
AAAELRYKYLWYRSILHSPDRVSMVFNLSDIGSSTERKNFVEVQQVVYCC
CTCLCHRHCHRCCYRIYVLLPDTCTRNHTKLNCCCRRSPTAAVRSEPIFE
ARLLSLYAQKYCCWVVTKKNGNLNGRTHE*
back to top

mRNA from alignment at P-littoralis_Contig10:998351..999576+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig10.272.1 ID=mRNA_P-littoralis_Contig10.272.1|Name=mRNA_P-littoralis_Contig10.272.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1226bp|location=Sequence derived from alignment at P-littoralis_Contig10:998351..999576+ (Pylaiella littoralis U1_48)
CAAGAGAGCAAGAAGCAAGTCAAATCCCACAAGTCAAATGCAACTCCGTC
AACAGCAGTAGTCGTCAAGGCTCCACGGAACCCCCTGCTTGGCAAAACAA
CAAGTCAAGTTGCAGTTCAAACCTAAACCGAAAGGGTGGGCGACGCAGGT
GGACCACTGCGGTATCCTTGTGTCTCAAACCTTGCAAGTGTGAGACAAAG
CTTGGCCGCTTGACGTATTGGTCTCCCACTTTTGAAAGGAGACTTCAGTG
ATCATGAGCCGACAATATGGGCATCATCTCCTCTCCGTGTTTTTTATTTC
AGTGATTTTGAATAGGTCGTGCAGCGCCTTTTTCATCGCCACCACCAGCA
GTGCTATAACAACAGCAGCGAGGCCAGGAGCGAGGCCGACCGTACCAGCA
CGAATGGTGAAGATCGGTGATCGTCTTCGAAACTTTTACTTTTCGCGTCC
ACACGACCAAGCAGTTGGAGGTGCGTGAAAAATCGGCGATAGTACAGCAG
TATATACTCGGCGGAGAGATTTGCGTTCTGCCCACGGCGACGTATATAGC
CGTGACGGCTACGTATATAGCTGTGCACAAACGAGCAGCTGTTACAGCAG
CAGCGGCAGAGTTGCGGTACAAGTACCTGTGGTACCGCAGTATATTACAC
TCACCAGACAGAGTCTCTATGGTCTTCAATCTGTCAGACATCGGGTCCAG
CACCGAGAGAAAAAATTTCGTCGAAGTACAGCAGGTTGTATACTGCTGCT
GTACTTGTCTATGCCATCGGCACTGCCACCGCTGCTGTTACCGCATTTAC
GTTCTATTACCTGATACTTGTACTCGAAATCATACAAAGCTAAACTGCTG
TTGTCGACGTTCTCCAACAGCAGCAGTACGTTCTGAACCGATTTTCGAAG
CTCGGCTTCTCTCGCTGTACGCACAAAAGTACTGCTGTTGGGTTGTCACA
AAAAAAAATGGCAATCTCAACGGAAGGACACATGAGTGATAAAAAAACAC
GCCCTTTCTATTTGCTCGCCTATGGGACACTTGGTTTGGTTGCATGAGTG
CCTCTCACGGCATGGTGTTTGTCGCCAAAGGCGTAAGTTTTTGCAGCAAC
TGCTGTGGTTGGTGACGATGTCAGGTGTTCATGAGACGCGAAAGTTGTGT
CCATTGATGATACCTTGGGTACAGTAGTATTCATATTTGGGTGTATCTGC
TGTCTGTCAACAGAGCAATATGACGT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig10:998351..999576+

>mRNA_P-littoralis_Contig10.272.1 ID=mRNA_P-littoralis_Contig10.272.1|Name=mRNA_P-littoralis_Contig10.272.1|organism=Pylaiella littoralis U1_48|type=CDS|length=540bp|location=Sequence derived from alignment at P-littoralis_Contig10:998351..999576+ (Pylaiella littoralis U1_48)
ATGGGCATCATCTCCTCTCCGTGTTTTTTATTTCCGGCGATAGTACAGCA
GTATATACTCGGCGGAGAGATTTGCGTTCTGCCCACGGCGACGTATATAG
CCGTGACGGCTACGTATATAGCTGTGCACAAACGAGCAGCTGTTACAGCA
GCAGCGGCAGAGTTGCGGTACAAGTACCTGTGGTACCGCAGTATATTACA
CTCACCAGACAGAGTCTCTATGGTCTTCAATCTGTCAGACATCGGGTCCA
GCACCGAGAGAAAAAATTTCGTCGAAGTACAGCAGGTTGTATACTGCTGC
TGTACTTGTCTATGCCATCGGCACTGCCACCGCTGCTGTTACCGCATTTA
CGTTCTATTACCTGATACTTGTACTCGAAATCATACAAAGCTAAACTGCT
GTTGTCGACGTTCTCCAACAGCAGCAGTACGTTCTGAACCGATTTTCGAA
GCTCGGCTTCTCTCGCTGTACGCACAAAAGTACTGCTGTTGGGTTGTCAC
AAAAAAAAATGGCAATCTCAACGGAAGGACACATGAGTGA
back to top