Homology
BLAST of mRNA_P-littoralis_Contig10.185.3 vs. uniprot
Match:
D7FQF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQF3_ECTSI)
HSP 1 Score: 270 bits (689), Expect = 8.360e-82
Identity = 202/411 (49.15%), Postives = 237/411 (57.66%), Query Frame = 3
Query: 258 GLESVKTALLAAHGDVRLQCKAANALASLCMSEEVARGFSAAPNSSAVVDRLGDMLRSRSQWAQADAAGCLGWLIGNIEG-TALHEIVPFVTQLMVKYTITDDEVFIREERQRSERGSWRRNRISKAGDNRGXXXXXXXXXXXXXSKESNQDEADQEQARERMDTIRVYTLIFLLKASHTDPSTMPAMVEAGAIPGLLRHLASAREESPYSQQQXXXXXXXXXENPAVHEGFHTRQKGRIFGGHRHRTDEDLDHEQKDQSSPSFLLAARLLYAFSVDSSVRKSLLEAKCLPPLIRIRRRLQ---AAEAAAXXXGTAAGSTVEPELAC--IGTKDLEGKTALLAGKGALAVEEEGADLGNQTAHPSSRCTAAGNENSSCSERGVKQMDGESGQPPLEAMVGFLVDQLVGRAS 1472
GLE+VK ALL H D+RLQCKAANALASLCMSEEVARGF+AAPNSSAVVDRLGDMLRSRSQWAQADAAGCLGWL+G + G TALHE++P VT+LMV++T DDEVFI EERQR ++ W R+R S + RGXXXXXXXXXX ++QARERMD IRVY+LIFLLK D R +G +FG H TD + DQ+ PS LLAARLLYA S+D R SLLEAKCLPPLIR+RR+L AAEA XXX + V+P L C I G A G VE+EG +GNQ A S A G+ +S G+ E +V +VDQLVGR++
Sbjct: 17 GLEAVKDALLKTHADIRLQCKAANALASLCMSEEVARGFTAAPNSSAVVDRLGDMLRSRSQWAQADAAGCLGWLVGTLAGGTALHELIPLVTRLMVRHTTKDDEVFISEERQREQQAVWGRSRSSNS---RGXXXXXXXXXXDK-----------EDQARERMDNIRVYSLIFLLKKQEADS---------------------------------------------------VRARG-VFGQRHHGTDGNAADGGGDQTPPSLLLAARLLYAISLDPGGRSSLLEAKCLPPLIRLRRQLHTEAAAEATXXXXXXXTTAAVQPALECTKIPAGPNSGSAAFARKGGTEEVEKEGF-VGNQQAQHSGGDVATGDSSSEPDVEGI------------EVIVSLIVDQLVGRSN 348
BLAST of mRNA_P-littoralis_Contig10.185.3 vs. uniprot
Match:
A0A5D6YD55_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YD55_9STRA)
HSP 1 Score: 60.5 bits (145), Expect = 4.050e-6
Identity = 47/121 (38.84%), Postives = 65/121 (53.72%), Query Frame = 3
Query: 171 AIADAMTEVAALPCSPEGL----LLRSSVAAGGGLESVKTALLAAHG--DVRLQCKAANALASLCMSEEVARGFSAAPNSSAVVDRLGDMLRSRSQWAQADAAGCLGWLIGNIEGTALHEI 515
A DA+T +AALP G+ LL S G ++AA DVRL+CKAA+AL SLC+S VA + +A + L M SR++WAQADA LGW++ + AL ++
Sbjct: 61 AFVDALTTIAALPVDALGMETRRLLVDSGECDGEAGDAAARVVAALDCRDVRLKCKAASALGSLCVSR-VAGQRLLELHGAAALRSLARMATSRNRWAQADALAVLGWVVVIADERALAQV 180
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig10.185.3 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 8.36e-82 / Id = 49.15 Expect = 4.05e-6 / Id = 38.84 Sequence D7FQF3_ECTSI A0A5D6YD55_9STRA
Match Name E-value Identity Description
D7FQF3_ECTSI 8.360e-82 49.15 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A5D6YD55_9STRA 4.050e-6 38.84 Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1
Start 1
Seed ortholog 2880.D7FQF3
Model size 1786
Max annot lvl 2759|Eukaryota
Hectar predicted targeting category other localisation
Exons 5
Evalue 3.45e-84
EggNOG OGs 28MT9@1|root,2QUBJ@2759|Eukaryota
Cds size 1419
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789333.8886185-UTR-P-littoralis_Contig10:670817..670888 1680789333.8886185-UTR-P-littoralis_Contig10:670817..670888 Pylaiella littoralis U1_48 UTR P-littoralis_Contig10 670818..670888 +
1680789333.967234-UTR-P-littoralis_Contig10:674863..675159 1680789333.967234-UTR-P-littoralis_Contig10:674863..675159 Pylaiella littoralis U1_48 UTR P-littoralis_Contig10 674864..675159 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789333.9013736-CDS-P-littoralis_Contig10:670888..671073 1680789333.9013736-CDS-P-littoralis_Contig10:670888..671073 Pylaiella littoralis U1_48 CDS P-littoralis_Contig10 670889..671073 +
1680789333.9200718-CDS-P-littoralis_Contig10:671398..671551 1680789333.9200718-CDS-P-littoralis_Contig10:671398..671551 Pylaiella littoralis U1_48 CDS P-littoralis_Contig10 671399..671551 +
1680789333.932236-CDS-P-littoralis_Contig10:673050..673423 1680789333.932236-CDS-P-littoralis_Contig10:673050..673423 Pylaiella littoralis U1_48 CDS P-littoralis_Contig10 673051..673423 +
1680789333.9435403-CDS-P-littoralis_Contig10:673741..674055 1680789333.9435403-CDS-P-littoralis_Contig10:673741..674055 Pylaiella littoralis U1_48 CDS P-littoralis_Contig10 673742..674055 +
1680789333.9552794-CDS-P-littoralis_Contig10:674469..674863 1680789333.9552794-CDS-P-littoralis_Contig10:674469..674863 Pylaiella littoralis U1_48 CDS P-littoralis_Contig10 674470..674863 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig10.185.3
>prot_P-littoralis_Contig10.185.3 ID=prot_P-littoralis_Contig10.185.3|Name=mRNA_P-littoralis_Contig10.185.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=473bp
MNEPFSVIKLAPAARNVNVGLICSRLRRTTDREAIADAMTEVAALPCSPE GLLLRSSVAAGGGLESVKTALLAAHGDVRLQCKAANALASLCMSEEVARG FSAAPNSSAVVDRLGDMLRSRSQWAQADAAGCLGWLIGNIEGTALHEIVP FVTQLMVKYTITDDEVFIREERQRSERGSWRRNRISKAGDNRGGGGGGGV GRSSGGSKESNQDEADQEQARERMDTIRVYTLIFLLKASHTDPSTMPAMV EAGAIPGLLRHLASAREESPYSQQQRQWQQQQQQENPAVHEGFHTRQKGR IFGGHRHRTDEDLDHEQKDQSSPSFLLAARLLYAFSVDSSVRKSLLEAKC LPPLIRIRRRLQAAEAAAAAAGTAAGSTVEPELACIGTKDLEGKTALLAG KGALAVEEEGADLGNQTAHPSSRCTAAGNENSSCSERGVKQMDGESGQPP LEAMVGFLVDQLVGRASPASGH* back to top mRNA from alignment at P-littoralis_Contig10:670818..675159+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig10.185.3 ID=mRNA_P-littoralis_Contig10.185.3|Name=mRNA_P-littoralis_Contig10.185.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=4342bp|location=Sequence derived from alignment at P-littoralis_Contig10:670818..675159+ (Pylaiella littoralis U1_48)CATACACACACAGTGAGAGATATGGTAGAGTCTACCATCTTCACTCCGTA
TTGACCTTTAAAGCTCTGCGA ATGAACGAACCATTCTCTGTCATCAAGTT
GGCCCCGGCGGCACGAAACGTTAACGTTGGGTTGATCTGTAGCAGATTAC
GACGAACAACTGACCGGGAGGCCATTGCGGACGCCATGACTGAAGTGGCT
GCACTCCCTTGCTCACCTGAGGGCTTACTGCTGAGGAGTAGCGTGGCCGC
AGGAGG GTGAGTCAACACGAACGAGAGGTCGTTGGTTGCCCGCGTGTTGG
CTGAGCCAACTGTTGTAGGGACAAGTGTCAGGACGGCCACTGTACGGTAC
TGAAGTACCATAGCTCTTAGACAGCATGACTGCAATGTCGTGCCGTTCTG
CCCAGCAGTCTTCGCGAACAACCCGTTCATTCTGCTGCAGTGCGCACCTC
AGGTCGAAGTTTTAGAAAGCGTGAATACGAACAGATCCCTTGTACACGAA
TGTGTTACCAAATTTTCACCCCCCTGAGAGTCACGTCCTTTGATCTTCCT
GTATTTGTATCGTGTGTTTGGCTCCTCGAAGGGGGCTCGAGTCCGTTAAG
ACTGCTCTCCTGGCAGCACACGGCGACGTTAGGCTGCAGTGCAAGGCTGC
CAACGCCCTCGCGTCCTTGTGCATGTCGGAGGAGGTCGCGAGAGGCTTCT
CGGCGGCTCCGAATAGCTCCGCTGTGGTTGACAG GTGACCCCCGAGCTAT
CGTTTTTTTTGCGTACAGTAGTGACTGCGTACACGGCGCGGCGGCAAGCG
ATGCTCTTGCTACAGATCTAGAACAATAGCAGCTTACCACCGCAGCCTTA
TTGACGCGTGGTGAAATACTGTAGCTGATGGGATTACAAGCCAGCGTTTC
AGTCTGTGTGTGGATTTTCCGGAGCCTTACTGCTGCGTACTAAGGCTCTT
TTTAATCAGGCCGCCTGATTTCATGGAAACGACTTTTTTTTCACGGAAAC
GCGAAATGGCCGACAATACCTAGGCTTTCTTCCCCCGAAACATGAAATTG
AGCGACGGCAAAATAACGTAAATATTCGATTTCACGGAAACAGGAATTTT
TCCAGCCATTTCCAGAAACGTACGCAACACACACCGAACCCGTCCTACAG
CAGCAACAACAGTGCAGAAAGCAAAATAAAGAGCAGGATACCCGAGACAA
TCACTCTGGCGAGCAAACCCACCCCTGATGTGCAAATTCCGGCAGGCGTG
GTGGGAGGTTGGTGAACGAAATTAGAGCAGTAGCGATGAGAAGGAACCGG
AATCCTTGGTTTCGCCGCTTGTCTGCCTCTTTTTCTTGCTCCGCCAATAC
ACACCCTGCTGGCAACCACTTTGAAGCCAGCACTCAAGCTGCGACGACCG
CGTAGCGCCAGCGTGGTCGAGGGCCACTATCATGTAGACGCCCGTTTCAA
AAGAATCAGGAGTTCGGAGGCCTTGTAGCTCTGATGCTGTCTGATGCCGT
CAAGTGAAGCTTGTGACTGCAACCAAAGAACACCACCACCACCAGCGCGA
TTTGGAGGCGTCTAACAGCACACACCATCTTCTTGCGACCCTCGGTGAGC
CTCACACGAGCTACCACAACCACGCAGCGGCAATAATACCGAGGGTCACT
ATCATGTAGACCTACGTTTCGAAAGAATAAGGACCCGGGAGGTCTTCGGT
CTCTGTTGCTGTCTGCTGTTGTGTAGTGATCTTTGCCTGATTTTACAGCA
GAAAAGCACCATGACCTACCTGTTCGATTAGGATGGAGGTGTTGTCAAGG
TTTGTGTTCCCTGAAAAAAAAACCGTTTCCAAGAAATCAGGCGTCGTGAT
TAAAAAGGGCCTAATCATGCGTGAAGAAGGAACTCAAATGTCAATCGTGG
TGTAGGCGATAGTGGTGTCTTCACGAATTACAAATACTGTTGTATCTCCC
TTGCAGCTTTTTACCAAGCAAGAGCAACACAAGGCGGTGGCATTCTTCGG
TCTATCAACGAGTTCGGAATCCGATCATCACCATCATATCTCTAAGAAAA
ATTTGTTCAGTAGAGGCGAGTTGATGACGTACTGCTCGAGCATTCCTCTC
AAATTTGTCATTTCGCTCACGAAGATTTGTATGAAGTCACTGCTGTTCCA
ATCTTCTCAGCTCGTCCGTACTGATGTCGAGCTCACCAGCCGCTGTTCTT
GCTGTTGGTCACCAACTGCTATCGTCACGGTAGGCTCGGTGACATGCTGC
GATCGCGCAGCCAGTGGGCCCAAGCAGATGCGGCGGGTTGCCTGGGGTGG
CTCATCGGCAACATCGAAGGCACCGCTCTGCACGAAATCGTGCCCTTTGT
GACGCAGCTAATGGTGAAGTATACCATAACTGACGACGAGGTGTTTATTC
GCGAGGAGAGGCAGCGAAGCGAGAGGGGATCGTGGCGTCGAAATCGCATC
AGTAAGGCAGGGGATAATCGAGGTGGTGGTGGTGGTGGTGGTGTTGGACG
CAGCAGTGGAGGCAGTAAAGAGAGCAATCAAGACGAGGCGGACCAGGAGC
AGGCGCGGGAGCGCATGGACACCATTCGAGTGTATACCCTCATATTTCTT
CTTAAG GTGAAACCTGAACCTGAACGAAATTAGTTCTCCTGGAGGAGTTC
GATTCAGGCAGATGCAAGAGGTAATTATGGTTGGTTCCCAGCAACGCGCT
GAACCTCTTTGCTCGTGGATCCTTGCTATGTTCTGTGCAGTAGTTTGGCG
TGGTCTAACGCACCCGGCGGCATCGCTCGACCTGCTGTACTACGGGTTTT
GGTCGTTAACATCGATCACACTGCTGCTTTTGTGCCGGAATTGCGTCGTC
CCTCCCGCCTGAAGTATACCCGCGGTGCGTTCTCTTCTTCTTGCTTCTAT
TCGCTATTCGAATCGAACTACAAGGCCTCGCACACGGATCCTTCGACAAT
GCCTGCCATGGTGGAAGCGGGGGCGATCCCGGGGCTGTTGAGACACCTCG
CGAGTGCTCGGGAAGAATCCCCCTACTCACAGCAGCAGCGGCAGTGGCAG
CAGCAGCAGCAGCAAGAAAACCCTGCGGTGCACGAAGGTTTCCATACACG
TCAGAAAGGGCGGATATTCGGGGGGCACCGTCACCGAACAGACGAAGATT
TGGACCACGAGCAGAAAGACCAGTCGTCCCCGTCGTTCTTGCTGGCAGCG
CGGCTGCTGTACGCTTTCTCGGTGGACTCGAGCGTCAG GTGCTTTTGATA
GCGATCAGTAGCAGCAGCAGCAGCGATGAAACTATTTCTCAAGCCAGATG
TTGTTGCGCACAGCCTTCCCTTTGTTTCTGTGACCGAACGGGGCTCTTTC
CACGCTTCAAACTATACCGGGCTCCTACCAAAAATGTAAGTCGAGGGTCA
CACGCTGGCAGGGGTGATCTTGCAAGCTGAAATCTTGGAACGCAGTAAAG
CTTCAGCAGACAAAGGATGATCACACAAGTCGAAAGCTTGGAAGGGCAGT
AGAGCTTCAACAGAAAAAAATAATGCAAATAAATTGGCAATCTGAGGGCC
GGAAGGCCGCTTTTCGGAGGGTGCGCTGATTCACAAGTCTGAAGGTTGGA
CCGGCTGATCCTGCTGAAATTTCGTTATCGGTGGCGTCATTCTATTGAAC
AGGAAGTCTCTCCTGGAAGCCAAATGTCTGCCGCCGCTCATCCGCATCAG
GCGACGACTTCAGGCAGCAGAAGCAGCGGCAGCGGCAGCTGGCACCGCCG
CCGGCAGCACCGTCGAACCTGAGCTCGCATGTATCGGAACCAAAGATTTA
GAAGGCAAAACGGCTTTGCTGGCTGGCAAAGGGGCCTTAGCAGTAGAAGA
AGAGGGGGCTGATCTAGGAAACCAAACAGCACACCCAAGCAGCAGATGTA
CAGCTGCTGGGAATGAGAACAGCAGTTGTAGTGAGCGCGGTGTGAAGCAA
ATGGACGGGGAGAGTGGGCAACCTCCGCTGGAGGCAATGGTTGGCTTCCT
TGTAGATCAGTTGGTCGGTAGGGCATCTCCGGCGAGCGGTCACTGA ATCG
TCGACTCAATATCATAGATTGTAGCGTGTCATCCCCAACTGCTGTGTCTG
TTTTCTGTGGACAAAGTGTGTAAACTTGCTGCGAAGCAACCAATGTAGAA
GAAGTTCAGCATACACCGTGAGCGGAGGGTCGTGGGAGCGTAGGAGCAAC
TCTCCTCTGATTAATCTACTACTTGTCTCCAATGATTTACAGCGAGAACG
CGCCACCGCATCGGCGTACAAGCATTTTTCCGTGTGGGCTCCAAGCCGCT
CGAGAATGTGGCAACCATGAGTTAATCGACATCATCTCTGAG back to top Coding sequence (CDS) from alignment at P-littoralis_Contig10:670818..675159+
>mRNA_P-littoralis_Contig10.185.3 ID=mRNA_P-littoralis_Contig10.185.3|Name=mRNA_P-littoralis_Contig10.185.3|organism=Pylaiella littoralis U1_48|type=CDS|length=1419bp|location=Sequence derived from alignment at P-littoralis_Contig10:670818..675159+ (Pylaiella littoralis U1_48) ATGAACGAACCATTCTCTGTCATCAAGTTGGCCCCGGCGGCACGAAACGT TAACGTTGGGTTGATCTGTAGCAGATTACGACGAACAACTGACCGGGAGG CCATTGCGGACGCCATGACTGAAGTGGCTGCACTCCCTTGCTCACCTGAG GGCTTACTGCTGAGGAGTAGCGTGGCCGCAGGAGGGGGGCTCGAGTCCGT TAAGACTGCTCTCCTGGCAGCACACGGCGACGTTAGGCTGCAGTGCAAGG CTGCCAACGCCCTCGCGTCCTTGTGCATGTCGGAGGAGGTCGCGAGAGGC TTCTCGGCGGCTCCGAATAGCTCCGCTGTGGTTGACAGGCTCGGTGACAT GCTGCGATCGCGCAGCCAGTGGGCCCAAGCAGATGCGGCGGGTTGCCTGG GGTGGCTCATCGGCAACATCGAAGGCACCGCTCTGCACGAAATCGTGCCC TTTGTGACGCAGCTAATGGTGAAGTATACCATAACTGACGACGAGGTGTT TATTCGCGAGGAGAGGCAGCGAAGCGAGAGGGGATCGTGGCGTCGAAATC GCATCAGTAAGGCAGGGGATAATCGAGGTGGTGGTGGTGGTGGTGGTGTT GGACGCAGCAGTGGAGGCAGTAAAGAGAGCAATCAAGACGAGGCGGACCA GGAGCAGGCGCGGGAGCGCATGGACACCATTCGAGTGTATACCCTCATAT TTCTTCTTAAGGCCTCGCACACGGATCCTTCGACAATGCCTGCCATGGTG GAAGCGGGGGCGATCCCGGGGCTGTTGAGACACCTCGCGAGTGCTCGGGA AGAATCCCCCTACTCACAGCAGCAGCGGCAGTGGCAGCAGCAGCAGCAGC AAGAAAACCCTGCGGTGCACGAAGGTTTCCATACACGTCAGAAAGGGCGG ATATTCGGGGGGCACCGTCACCGAACAGACGAAGATTTGGACCACGAGCA GAAAGACCAGTCGTCCCCGTCGTTCTTGCTGGCAGCGCGGCTGCTGTACG CTTTCTCGGTGGACTCGAGCGTCAGGAAGTCTCTCCTGGAAGCCAAATGT CTGCCGCCGCTCATCCGCATCAGGCGACGACTTCAGGCAGCAGAAGCAGC GGCAGCGGCAGCTGGCACCGCCGCCGGCAGCACCGTCGAACCTGAGCTCG CATGTATCGGAACCAAAGATTTAGAAGGCAAAACGGCTTTGCTGGCTGGC AAAGGGGCCTTAGCAGTAGAAGAAGAGGGGGCTGATCTAGGAAACCAAAC AGCACACCCAAGCAGCAGATGTACAGCTGCTGGGAATGAGAACAGCAGTT GTAGTGAGCGCGGTGTGAAGCAAATGGACGGGGAGAGTGGGCAACCTCCG CTGGAGGCAATGGTTGGCTTCCTTGTAGATCAGTTGGTCGGTAGGGCATC TCCGGCGAGCGGTCACTGA back to top