mRNA_P-littoralis_Contig10.175.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig10.175.1
Unique NamemRNA_P-littoralis_Contig10.175.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig10.175.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 269 bits (687), Expect = 4.850e-84
Identity = 153/347 (44.09%), Postives = 206/347 (59.37%), Query Frame = 1
Query:   10 FQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDH 870
            F+ +FN+WY RF KR+ FSIRR+TSVGQK P+G EG AWA + KLR +L + A E                               +F  L NMDQTP+Q E+P +TT+EKTG K A I+TGG+ EK R+T+VLAV  DG+KV PRII+KG PF                           R   G+PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH++E F   L   A T+V+ + G LTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG+V+TW KE W++ +  T+++CF +CGLTL LDGSEDH
Sbjct:   27 FKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGDEGMAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGGK-EKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAYSASAVADARSG-KLKPPERGVVSTWCKEAWESSTPETVKTCFMICGLTLALDGSEDH 371          
BLAST of mRNA_P-littoralis_Contig10.175.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 270 bits (690), Expect = 3.080e-82
Identity = 151/347 (43.52%), Postives = 205/347 (59.08%), Query Frame = 1
Query:   10 FQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDH 870
            F+ +FN+WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KL  +L + A E                               +F  + NMDQ P+Q EMP +TT++KTG K A I+TGG  EK R+T+VLAV  DG+KV PRII++G PF                           R   G+PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH +E F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG+V+TW KE W++I+  T+++C K+CGLTL LDGSEDH
Sbjct:  221 FKFKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLCEALVKRAGEIYARRHPPAPDESPIKGEDLNSEQLASVEAEVFEEVGNMDQMPVQHEMPVETTLDKTGAKDARISTGGGNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSPSAVADARSG-KLKPPERGVVSTWCKEAWESITPETVKTCSKICGLTLALDGSEDH 566          
BLAST of mRNA_P-littoralis_Contig10.175.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 259 bits (662), Expect = 7.150e-81
Identity = 155/376 (41.22%), Postives = 207/376 (55.05%), Query Frame = 1
Query:   10 FQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRGLVATWVKEVWDNISERTIRS-----------------------------CFKVCGLTLNLDGSEDH 870
            F+ + N+WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KLR +L   A E                               +F  L NMDQTP+Q EMP +TT+EKTG K A I+TGG+ EK R+T+VLAV  DG+KV PRII+KG PF                           R    +PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH++E +   L   A T+V+++ GGLTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG+V+TW KE W++I+  T+ S                             CFK+CGLTL LDGSEDH
Sbjct:   27 FKVKINSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALVRRAGEIYARRHPPAPDESPIKGEDLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGK-EKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSG-KLKPPERGVVSTWCKEAWESITPETVSSVRKERFALGDVRAWSGENPACSVXETVKTCFKICGLTLALDGSEDH 400          
BLAST of mRNA_P-littoralis_Contig10.175.1 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE)

HSP 1 Score: 259 bits (661), Expect = 1.380e-78
Identity = 152/355 (42.82%), Postives = 203/355 (57.18%), Query Frame = 1
Query:   10 FQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDF--------MRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDH 870
            F+ +FN+WY RF KR+ FSIRR+ SVGQK P+G+EG AWA + KLR +L + A E                               +F  L NMDQTP+Q EMP +TT+E TG K A I+TGG+ EK R+T+VLAV  DG+ V P II+KG PF                           R   G+PA G+S GVQ+ SW    + + W+   +        M RP + S   QRP +LVLDDF+CH++E F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG+V+TW KE W+ ++  T+ +CFK+CGLTL LDGSEDH
Sbjct:  181 FKVKFNSWYQRFRKRNGFSIRRRASVGQKLPKGYEGMAWATVTKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQPASVEAEVFEELGNMDQTPVQHEMPVETTLEDTGGKDARISTGGK-EKERFTLVLAVMADGKMVSPCIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEVHPANRAKHGHPANGMSFGVQEKSWSGQQECNGWIPGSWKLCPNNGSMXRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALNRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSAPAVADARSG-KLKPPERGVVSTWCKEAWEFVTSETVNTCFKICGLTLALDGSEDH 533          
BLAST of mRNA_P-littoralis_Contig10.175.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 245 bits (625), Expect = 1.230e-73
Identity = 153/375 (40.80%), Postives = 198/375 (52.80%), Query Frame = 1
Query:   10 FQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGET-------------------------EKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWI----RDNYGRSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDH 870
            F+ +F +WY RF KR++FSIRR+TSVG + P+G EG AWA + KLR +L E A E                               +F  L NMDQTP+Q EMP +TT+EKTG K A I TG                            EK R+T+ LAV  DG KV  RII+KG PF                           R+  G P GG+S GVQ+ SWCD  +   W+   +  RP  GS  R QR  +LVLDDF+CH+++ F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R  YT+      RD   ++G K+  P RG VATW K  W +I+  T+++CFK+CGLTL LDGSEDH
Sbjct:  114 FKSKFKSWYQRFRKRNKFSIRRRTSVGIRLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFKDLGNMDQTPVQYEMPVETTLEKTGAKDARIATGAGVCCIRTILKPLPYPPTSCILPPPPGKEKERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAHTAKAARDP--KTG-KLAPPGRGAVATWCKNAWASITPETVKTCFKICGLTLALDGSEDH 484          
BLAST of mRNA_P-littoralis_Contig10.175.1 vs. uniprot
Match: A0A6H5KRZ8_9PHAE (DDE-1 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ8_9PHAE)

HSP 1 Score: 243 bits (620), Expect = 4.290e-72
Identity = 153/362 (42.27%), Postives = 202/362 (55.80%), Query Frame = 1
Query:   10 FQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------RTSFGYPA-----------GGISLGVQ--------------KSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYT----SWIRDNYGRSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDH 870
            F+ +FN+WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KLR +L + A E                               +F  L NMDQTP+Q EMP +TT+EKTG K A I+TGGE EK R+T+VLAV  DG+KV PRII+KG PF               + S  +             GG    V               + SW D  + + W+   +  RP + S   QRP +LVLDDF+CH++E F   L   AKT V+ + GGLT + QPLDR +NK+ KR +R +YT    S + D   RSG K+  P  G+V+TW KE W++I+ +T+ +CFK+CGLTL LDGSE H
Sbjct:  209 FKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGE-EKERFTLVLAVMADGKKVSPRIIFKGTPFIPPTVSGKVKSTLPRKNSVAWEIHSANXARSGCHGGRQNDVSPRIIFKGTPFIPPTEKSWSDQRECNGWIPGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRGAKT-VIFIPGGLTSLLQPLDRMLNKQMKRLLRGKYTACSASAVAD--ARSG-KLNPPEHGVVSTWCKEAWESITSKTVETCFKICGLTLALDGSEHH 565          
BLAST of mRNA_P-littoralis_Contig10.175.1 vs. uniprot
Match: A0A6H5JQM5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM5_9PHAE)

HSP 1 Score: 239 bits (609), Expect = 4.740e-71
Identity = 149/347 (42.94%), Postives = 196/347 (56.48%), Query Frame = 1
Query:   10 FQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSED 867
            F+ +F  WY+RF +RH  SIRR+TSVGQK P G+EG A+A + KLR++L E A E                               +F  L NMDQTP+Q EMP +TT+EK G K A I+TGG+ EK R+T+ LAV  DG KV  RII+KG PF                           +T+FGYP  G+S GVQ+ SW D  +   W+++ +  RP  GS  + QR S+LVLDDFR +              T V+++ GGLTP+ QPLDR ++KE KR +R RYT ++       ++G K+  P RGLV+TW KE W  I+  T++ CFKVCGLTL LDGSED
Sbjct:  200 FRTKFKNWYHRFRERHGLSIRRRTSVGQKLPTGYEGLAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLSPAQLESVATEVFEELGNMDQTPVQQEMPVETTLEKGGAKDARISTGGK-EKERFTLCLAVMADGGKVPLRIIFKGKPFIPPSTARRGKNTQPRKGSIAAEVLPANQTNFGYPVSGMSFGVQERSWYDACECTLWLSESWGFRPNHGSVIK-QRHSILVLDDFRTN--------------TTVILIPGGLTPLLQPLDRMLDKEMKRLMRRRYTQYMASAIADPKTG-KLQPPGRGLVSTWCKESWAAITAETVKMCFKVCGLTLALDGSED 529          
BLAST of mRNA_P-littoralis_Contig10.175.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 1.080e-68
Identity = 145/339 (42.77%), Postives = 190/339 (56.05%), Query Frame = 1
Query:   19 RFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWI----RDNYGRSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTL 846
            +F +WY RF KR++FSIRR+TSVGQK P+G EG AWA + KLR +L E A E                               +F  L NMDQTP+Q EMP +TT+E TG K A I TGG+ EK R+T+ LAV  DG+KV  RII+KG PF                           R+  G P GG+S GVQ+ SWCD  +   W+   +  RP  GS  R QR  +LVLDDF+CH+++ F   L   A T+V+ + GGL P+ QPLDR +NK+ KR +R  YT+      RD   ++G K+  P RG VATW K  W +I+   +++CFK+CGLTL
Sbjct:  184 KFKSWYQRFCKRNKFSIRRRTSVGQKLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLENTGAKDARIATGGK-EKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMYTAHTAKAARDP--KTG-KLVPPGRGAVATWCKNAWASITPEIVKTCFKICGLTL 517          
BLAST of mRNA_P-littoralis_Contig10.175.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE)

HSP 1 Score: 225 bits (573), Expect = 2.360e-67
Identity = 120/273 (43.96%), Postives = 165/273 (60.44%), Query Frame = 1
Query:  136 QKLRSSLREHAQEAIFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYGRSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDH 870
            + L S      +  +F  L NMDQTP+Q EMP +TT+EKTG K A ++TGGE EK R+T+VLAV  DG+KV  RII+ G PF                           R   G+PA G+S GVQ+ SW D  + + W +  +  RP + S   QRP +LVLDDF+CH++E F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R++YT++          K+  P RG+V+TW K  W++I+  T+++CFK+CGLTL LDGSEDH
Sbjct:   33 EDLTSEQLASVEAEVFEDLGNMDQTPVQHEMPVETTLEKTGAKDARVSTGGE-EKERFTLVLAVTADGKKVSLRIIFMGTPFIPPTVSGKGKSTLPRKNSVAWEMHPTNRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRSKYTAYSASATDARSGKLKPPERGVVSTWCKGAWESITPETVKTCFKICGLTLALDGSEDH 304          
BLAST of mRNA_P-littoralis_Contig10.175.1 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE)

HSP 1 Score: 229 bits (585), Expect = 6.650e-65
Identity = 156/397 (39.29%), Postives = 196/397 (49.37%), Query Frame = 1
Query:   10 FQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARY----------------------------------------------------TSWIRDNYGRSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSED 867
            F+ +F  WY+ F +RH FSIRR+TSVGQK P G+EG A+A + KLR++L E A E                               +F  L NMDQTP+Q EMP +TT+EK G K A I+TGG+ EK R+T  LAV  DG KV  RII+KG PF                           RT FGYP  G+   VQ+ SWCD  +   W+++ +  RP  GS  + QR S+LVLDDFRCHR E F K L     T V+++ GGLTP+ QPLDR +NKE KR +R                                                        S I D   ++G K+  P RGLV+T  KE W  I+  T++ CFKVCGLTL LDGSED
Sbjct:   96 FRTKFKNWYHCFRERHGFSIRRRTSVGQKLPTGYEGLAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLTPAQLESVAAKVFEELGNMDQTPVQQEMPVETTLEKRGVKDARISTGGK-EKDRFTPCLAVMADGGKVPQRIIFKGKPFIPPSTAGREKNTQTRKGYIAAEVLLANRTKFGYPVSGMFFVVQEKSWCDARECTLWLSESWRFRPNHGSVIK-QRHSILVLDDFRCHRSESFVKDLRRRTNTTVILIPGGLTPLLQPLDRMLNKEMKRLMRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQYMASAIADP--KTG-KLQPPGRGLVSTRYKESWAAITPETVKMCFKVCGLTLALDGSED 487          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig10.175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6L9_9PHAE4.850e-8444.09DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JHT8_9PHAE3.080e-8243.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUK2_9PHAE7.150e-8141.22DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JTG5_9PHAE1.380e-7842.82DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KE45_9PHAE1.230e-7340.80DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRZ8_9PHAE4.290e-7242.27DDE-1 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5JQM5_9PHAE4.740e-7142.94DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE1.080e-6842.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KII4_9PHAE2.360e-6743.96DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K583_9PHAE6.650e-6539.29Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig10contigP-littoralis_Contig10:642268..643844 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FXD3
Preferred namePOGK
PFAMsBrkDBD,DDE_1,HTH_Tnp_Tc5,KRAB
Model size870
Max annot lvl2759|Eukaryota
KEGG koko:K09228
Hectar predicted targeting categorymitochondrion
Exons4
Evalue4.52e-47
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota
DescriptionDNA binding
Cds size870
COG categoryCH
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789333.704148-CDS-P-littoralis_Contig10:642267..6424441680789333.704148-CDS-P-littoralis_Contig10:642267..642444Pylaiella littoralis U1_48CDSP-littoralis_Contig10 642268..642444 +
1680789333.7174642-CDS-P-littoralis_Contig10:642549..6426661680789333.7174642-CDS-P-littoralis_Contig10:642549..642666Pylaiella littoralis U1_48CDSP-littoralis_Contig10 642550..642666 +
1680789333.727448-CDS-P-littoralis_Contig10:643190..6432771680789333.727448-CDS-P-littoralis_Contig10:643190..643277Pylaiella littoralis U1_48CDSP-littoralis_Contig10 643191..643277 +
1680789333.735519-CDS-P-littoralis_Contig10:643355..6438441680789333.735519-CDS-P-littoralis_Contig10:643355..643844Pylaiella littoralis U1_48CDSP-littoralis_Contig10 643356..643844 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig10.175.1prot_P-littoralis_Contig10.175.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig10 642268..643844 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig10.175.1

>prot_P-littoralis_Contig10.175.1 ID=prot_P-littoralis_Contig10.175.1|Name=mRNA_P-littoralis_Contig10.175.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=290bp
MEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRS
SLREHAQEAIFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEK
LRYTVVLAVRGDGQKVRPRIIYKGNPFRTSFGYPAGGISLGVQKSSWCDG
TQSDEWVTQDFMRRPGSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKT
LVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYGRSGQKVTAP
SRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDH
back to top

mRNA from alignment at P-littoralis_Contig10:642268..643844+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig10.175.1 ID=mRNA_P-littoralis_Contig10.175.1|Name=mRNA_P-littoralis_Contig10.175.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1577bp|location=Sequence derived from alignment at P-littoralis_Contig10:642268..643844+ (Pylaiella littoralis U1_48)
ATGGAAAAATTTCAGAAGCGTTTCAACGCCTGGTACTACAGGTTCCTCAA GAGGCACCGGTTCTCGATCCGACGCAAGACGAGCGTGGGGCAGAAGAAGC CGGAAGGATGGGAGGGCAAGGCGTGGGCATTCATCCAGAAGCTTCGCTCA AGCCTGCGTGAGCACGCGCAGGAAGCCGTTCTCTTGGAGAGGGCAGCCCA GGCAGCGAAGGACGGAGGGACCGTTGAGATCGAGATGGACGTCATCGCAA CTGCGGAGGAACTTCTGGCTGTTCAGGGCAAGATCTTCGCCCTTCTGTAC AACATGGACCAGACCCCGATCCAGGCTGAGATGCCGCCGGACACCACGGT GGAGAAGACTGGTACGAAGAGCGCTTGCATCACGACAGGAGGTGAGACGG TGTACTAAAGGTATTTCGATTGTTGAAATTCAGTTCAAACCAACATGGTG GAGATTTTCTGACGATGGAACAAGCGGGGAATTACAAATTTGCCGACGGC GGAAAAACGGGGAATTATAATATTTTGCATTGCTTCTCCCGTCACGTGCA CGCTTTCGTTCTTCTATTGCCTGCAAGTACGGTACGTACTGCTGTATCGC CTGTCCCTTCGAACTACCGGTACCGGTACACAGCGATGAAATTATTCATA TGGTATTCCGCTGAAGTATTTTTTTAATATACATATGTTTTGGGGGGCAA TATATATTTTACCGTATACACCGGATTTTGTTTTATTTTACTTTTTATGT TGTGGTAGGCATTACACCCCAGGAGTCAAAGGTGTGTGTTTGTTTTTTAT TATTATTTATTTTTTGTTTGTTGTGGCAGGCAATACGATTAATAATTGTA CTGCTTTGCGGAGTATTTTCTTCTAACACAATTTCCTTTGTTTGCATACG CCCCAATTTTCGCACCAGGCAAGGAGAAGCTGCGGTACACCGTGGTGCTA GCTGTCCGGGGTGATGGACAGAAGGTGCGGCCGCGCATCATCTACAAGGG GAACCCTTTTGTCGGGGGTACCAACAAGTCAGGCTCAGCCAAGAAGCCTG GCAAGAACAGCCTGTCGTACGAGCACCTCCCAGACAAGCGGACGAGCTTC GGCTACCCGGCTGGCGGCATCAGCCTCGGGGTGCAGAAGTCGTCGTGGTG CGACGGCACCCAGTCCGACGAGTGGGTAACCCAGGACTTCATGCGCCGCC CAGGGTCTACCTCCAGAGATCAGCGTCCCAGCGTTCTCGTGCTCGACGAC TTCAGGTGCCACCGGGAAGAGAGGTTCCAAAAGAAGCTAATGGACCTGGC CAAGACGCTGGTGGTGATGCTTGGTGGAGGGCTGACCCCGGTGTGCCAGC CGCTCGACCGGAACATCAACAAGGAGTTCAAGCGAGGTGTTCGGGCCAGG TACACCAGCTGGATCCGGGACAACTACGGGCGCTCGGGGCAGAAGGTGAC CGCGCCGAGCAGGGGGCTGGTCGCGACGTGGGTAAAGGAGGTGTGGGACA ACATCTCGGAGCGGACCATCCGCTCGTGCTTCAAGGTCTGCGGTCTCACC CTCAACCTCGACGGAAGCGAGGACCAC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig10:642268..643844+

>mRNA_P-littoralis_Contig10.175.1 ID=mRNA_P-littoralis_Contig10.175.1|Name=mRNA_P-littoralis_Contig10.175.1|organism=Pylaiella littoralis U1_48|type=CDS|length=870bp|location=Sequence derived from alignment at P-littoralis_Contig10:642268..643844+ (Pylaiella littoralis U1_48)
ATGGAAAAATTTCAGAAGCGTTTCAACGCCTGGTACTACAGGTTCCTCAA
GAGGCACCGGTTCTCGATCCGACGCAAGACGAGCGTGGGGCAGAAGAAGC
CGGAAGGATGGGAGGGCAAGGCGTGGGCATTCATCCAGAAGCTTCGCTCA
AGCCTGCGTGAGCACGCGCAGGAAGCCATCTTCGCCCTTCTGTACAACAT
GGACCAGACCCCGATCCAGGCTGAGATGCCGCCGGACACCACGGTGGAGA
AGACTGGTACGAAGAGCGCTTGCATCACGACAGGAGGTGAGACGGAGAAG
CTGCGGTACACCGTGGTGCTAGCTGTCCGGGGTGATGGACAGAAGGTGCG
GCCGCGCATCATCTACAAGGGGAACCCTTTTCGGACGAGCTTCGGCTACC
CGGCTGGCGGCATCAGCCTCGGGGTGCAGAAGTCGTCGTGGTGCGACGGC
ACCCAGTCCGACGAGTGGGTAACCCAGGACTTCATGCGCCGCCCAGGGTC
TACCTCCAGAGATCAGCGTCCCAGCGTTCTCGTGCTCGACGACTTCAGGT
GCCACCGGGAAGAGAGGTTCCAAAAGAAGCTAATGGACCTGGCCAAGACG
CTGGTGGTGATGCTTGGTGGAGGGCTGACCCCGGTGTGCCAGCCGCTCGA
CCGGAACATCAACAAGGAGTTCAAGCGAGGTGTTCGGGCCAGGTACACCA
GCTGGATCCGGGACAACTACGGGCGCTCGGGGCAGAAGGTGACCGCGCCG
AGCAGGGGGCTGGTCGCGACGTGGGTAAAGGAGGTGTGGGACAACATCTC
GGAGCGGACCATCCGCTCGTGCTTCAAGGTCTGCGGTCTCACCCTCAACC
TCGACGGAAGCGAGGACCAC
back to top