mRNA_P-littoralis_Contig10.140.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig10.140.1
Unique NamemRNA_P-littoralis_Contig10.140.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig10.140.1 vs. uniprot
Match: D7FQE5_ECTSI (AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQE5_ECTSI)

HSP 1 Score: 365 bits (936), Expect = 6.070e-122
Identity = 182/187 (97.33%), Postives = 183/187 (97.86%), Query Frame = 1 
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHTASNKVGLPPSGGISAHGRPSGGVGSGGPSGIPGMRTR 561
            MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVD+QESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQIL AINDQNRLH ASNKVGLPPSGGISAHGRPSGGVG GG SGIPGMRTR
Sbjct:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILLAINDQNRLHAASNKVGLPPSGGISAHGRPSGGVGGGGSSGIPGMRTR 187
[Close]
BLAST of mRNA_P-littoralis_Contig10.140.1 vs. uniprot
Match: A0A835ZDS3_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDS3_9STRA)

HSP 1 Score: 280 bits (715), Expect = 9.010e-89
Identity = 132/157 (84.08%), Postives = 149/157 (94.90%), Query Frame = 1 
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHTASNKVGL 471
            MI+ V+IVNNHGKPRLVKFY+TV  E+AQ+SVI+RIFQQVAQRPD+FCNYLEG IPEWGEGTKLIYRHYATLYF+FAVD+QESDLGILDL+QVFVEALDKCFENVCELDLIFHSD+VHYVLDE+IMGGMVLETNIN +L+A+NDQ++LH AS KV L
Sbjct:    1 MIKAVVIVNNHGKPRLVKFYKTVTDEDAQQSVIRRIFQQVAQRPDNFCNYLEGSIPEWGEGTKLIYRHYATLYFIFAVDSQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYVLDEMIMGGMVLETNINAVLSAVNDQSKLHAASMKVQL 157
[Close]
BLAST of mRNA_P-littoralis_Contig10.140.1 vs. uniprot
Match: W7T2Y9_9STRA (AP complex subunit sigma n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T2Y9_9STRA)

HSP 1 Score: 276 bits (706), Expect = 1.950e-87
Identity = 133/155 (85.81%), Postives = 142/155 (91.61%), Query Frame = 1 
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHTASNKV 465
            MIRGVIIVNNHG+PRLVK YQ+V+GEEAQ+SVI+++FQQVAQRPDSFCNYL+G IPEWGEG KLIYRHYATLYFVFAVD QESDLGILDL+QVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIM GMVLETNI  IL  INDQNRLH  S K 
Sbjct:    1 MIRGVIIVNNHGRPRLVKLYQSVIGEEAQQSVIRKVFQQVAQRPDSFCNYLDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLHAQSQKT 155
[Close]
BLAST of mRNA_P-littoralis_Contig10.140.1 vs. uniprot
Match: A0A6S8ZKR8_9STRA (AP complex subunit sigma n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8ZKR8_9STRA)

HSP 1 Score: 270 bits (691), Expect = 3.330e-85
Identity = 126/152 (82.89%), Postives = 141/152 (92.76%), Query Frame = 1 
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHTAS 456
            MI+G++IVNNHGKPRLVKFYQ+V  EE Q+SVI+R+FQQVAQRPDSFCNYLEGIIPEWG   KLIYRHYATLYFVFAVD+QESDLGILDL+QVFVEALDKCFENVCELDLIFHSD+VHYVLDEI+MGGMVLETNIN +L AI DQ ++H +S
Sbjct:    1 MIKGILIVNNHGKPRLVKFYQSVTSEETQQSVIRRVFQQVAQRPDSFCNYLEGIIPEWGSNIKLIYRHYATLYFVFAVDSQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYVLDEIVMGGMVLETNINSVLQAIGDQTKMHKSS 152
[Close]
BLAST of mRNA_P-littoralis_Contig10.140.1 vs. uniprot
Match: A0A7R9U773_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U773_9STRA)

HSP 1 Score: 265 bits (678), Expect = 5.080e-83
Identity = 132/170 (77.65%), Postives = 145/170 (85.29%), Query Frame = 1 
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHTASNKVGLPPSGGISAHGRPS 510
            MI+ VI+VNNHGK RLVKFYQ V    AQ+SVI+R+FQQV QRPDSFCNYLEG +PEWG+  KLIYRHYATLYFVFAVD+QESDLGILDL+QVFVEALDKCFENVCELDLIFHSD+VHYVLDEIIM GMVLETNI  IL AINDQ+R+H ASNK   P +G     GRPS
Sbjct:   14 MIKAVIVVNNHGKARLVKFYQNVDSVSAQQSVIRRVFQQVGQRPDSFCNYLEGSVPEWGDDVKLIYRHYATLYFVFAVDSQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYVLDEIIMAGMVLETNIVNILQAINDQHRMHMASNKA-QPGTGNAVGRGRPS 182
[Close]
BLAST of mRNA_P-littoralis_Contig10.140.1 vs. uniprot
Match: B5YNE9_THAPS (AP complex subunit sigma n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YNE9_THAPS)

HSP 1 Score: 263 bits (671), Expect = 3.080e-82
Identity = 125/154 (81.17%), Postives = 139/154 (90.26%), Query Frame = 1 
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHTASNK 462
            MI+G+IIVNN GKPRLVKFYQ V GE+ Q+SVI+R+FQQV+ RPDSFCNYLEG +PEWGE  KLIYRHYATLYFVFAVD+QESDLGILDL+QVFVEALDK FENVCELDLIFHSD+VHY+LDEI+MGGMVLETNIN IL AINDQ R+H  S K
Sbjct:    1 MIKGIIIVNNSGKPRLVKFYQNVFGEQRQQSVIRRVFQQVSTRPDSFCNYLEGSVPEWGENIKLIYRHYATLYFVFAVDSQESDLGILDLIQVFVEALDKRFENVCELDLIFHSDRVHYILDEIVMGGMVLETNINSILQAINDQERMHNESMK 154
[Close]
BLAST of mRNA_P-littoralis_Contig10.140.1 vs. uniprot
Match: A0A7S2P852_9STRA (AP complex subunit sigma n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P852_9STRA)

HSP 1 Score: 262 bits (670), Expect = 4.650e-82
Identity = 126/164 (76.83%), Postives = 142/164 (86.59%), Query Frame = 1 
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHTASNKVGLPPSGGIS 492
            MI+GVIIVNN GKPRL KFYQ+V  EE Q+ VI+R+F+Q++ RPD+FCNYLEGI+PEWG   KLIYRHYATLYFVFAVDAQESDLGILDL+QVFVEALDKCFENVCELDLIFHSDKVHYVLDEI+MGGMVLETNI  IL AI DQ +LH AS K  +  + G+S
Sbjct:    1 MIKGVIIVNNQGKPRLAKFYQSVTSEEIQQRVIRRVFEQISSRPDNFCNYLEGIVPEWGSNIKLIYRHYATLYFVFAVDAQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIVMGGMVLETNIASILQAIQDQGKLHAASLKAKVDKTDGLS 164
[Close]
BLAST of mRNA_P-littoralis_Contig10.140.1 vs. uniprot
Match: A0A8J9T0F8_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9T0F8_PHATR)

HSP 1 Score: 258 bits (658), Expect = 1.160e-80
Identity = 120/149 (80.54%), Postives = 135/149 (90.60%), Query Frame = 1 
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLH 447
            MI+G+IIVNNHGKPRLVKFYQ V  E  Q+SVI+R+FQQVA RPDSFCNYLEGI+PEWG+  KLIYRHYATLYFVFAVD QESDLGILDL+QVFVEALDKCFENVCELDLIFHSD+VHY+LDEI+MGGMVLETNI  +L +I DQ ++H
Sbjct:    1 MIKGIIIVNNHGKPRLVKFYQNVESEALQQSVIRRVFQQVAARPDSFCNYLEGIVPEWGDHIKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYILDEIVMGGMVLETNIQGVLQSIKDQGKIH 149
[Close]
BLAST of mRNA_P-littoralis_Contig10.140.1 vs. uniprot
Match: A0A1Z5JTJ4_FISSO (AP complex subunit sigma n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JTJ4_FISSO)

HSP 1 Score: 258 bits (658), Expect = 3.210e-80
Identity = 120/152 (78.95%), Postives = 139/152 (91.45%), Query Frame = 1 
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHTAS 456
            MI+G+IIVNNHGKPRLVKFYQ+V  E  Q+SVI+R+FQQVA RPDSFCNYLEG IPEWG+  KLIYRHYATL+FVFAVD+QESDLGILDL+QVFVE+LD+CFE+VCELDLIFHSD+VHYVLDEI+MGGMVLETNI+ +L A+ DQ+RLH  S
Sbjct:    1 MIKGIIIVNNHGKPRLVKFYQSVESESLQQSVIRRVFQQVAARPDSFCNYLEGAIPEWGDNIKLIYRHYATLFFVFAVDSQESDLGILDLIQVFVESLDRCFESVCELDLIFHSDRVHYVLDEIVMGGMVLETNIHSVLQAVKDQDRLHKDS 152
[Close]
BLAST of mRNA_P-littoralis_Contig10.140.1 vs. uniprot
Match: K0SBT8_THAOC (Clat_adaptor_s domain-containing protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SBT8_THAOC)

HSP 1 Score: 261 bits (667), Expect = 3.440e-79
Identity = 127/158 (80.38%), Postives = 140/158 (88.61%), Query Frame = 1 
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHTASNKVGLP 474
            MI+G+IIVNN GKPRLVKFYQ V GEE Q+SVI+R+FQQV+ RPDSFCNYLEG +PEWGE  KLIYRHYATLYFVFAVDAQESDLGILDL+QVFVEALDK FENVCELDLIFHSDKVH++LDEI+MGGMVLETNIN IL AI+DQ R+H  S K   P
Sbjct:  174 MIKGIIIVNNSGKPRLVKFYQNVFGEEKQQSVIRRVFQQVSTRPDSFCNYLEGSVPEWGEKCKLIYRHYATLYFVFAVDAQESDLGILDLIQVFVEALDKRFENVCELDLIFHSDKVHHILDEIVMGGMVLETNINAILQAISDQERMHKDSMKTKGP 331
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig10.140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQE5_ECTSI6.070e-12297.33AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=... [more]
A0A835ZDS3_9STRA9.010e-8984.08AP complex subunit sigma n=1 Tax=Tribonema minus T... [more]
W7T2Y9_9STRA1.950e-8785.81AP complex subunit sigma n=2 Tax=Monodopsidaceae T... [more]
A0A6S8ZKR8_9STRA3.330e-8582.89AP complex subunit sigma n=1 Tax=Ditylum brightwel... [more]
A0A7R9U773_9STRA5.080e-8377.65Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
B5YNE9_THAPS3.080e-8281.17AP complex subunit sigma n=1 Tax=Thalassiosira pse... [more]
A0A7S2P852_9STRA4.650e-8276.83AP complex subunit sigma n=1 Tax=Leptocylindrus da... [more]
A0A8J9T0F8_PHATR1.160e-8080.54Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A1Z5JTJ4_FISSO3.210e-8078.95AP complex subunit sigma n=2 Tax=Fistulifera solar... [more]
K0SBT8_THAOC3.440e-7980.38Clat_adaptor_s domain-containing protein n=2 Tax=T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig10contigP-littoralis_Contig10:557587..560777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQE5
Preferred nameAP3S1
PFAMsClat_adaptor_s
Model size1617
Max annot lvl2759|Eukaryota
KEGG koko:K10436,ko:K12399
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0006605,GO:0006623,GO:0006725,GO:0006726,GO:0006727,GO:0006810,GO:0006886,GO:0006892,GO:0006896,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007033,GO:0007034,GO:0007040,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008055,GO:0008088,GO:0008089,GO:0008104,GO:0008150,GO:0008152,GO:0008286,GO:0008565,GO:0009058,GO:0009405,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0010970,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0018130,GO:0019438,GO:0019748,GO:0023052,GO:0030117,GO:0030119,GO:0030123,GO:0030133,GO:0030659,GO:0030705,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0033036,GO:0033060,GO:0033365,GO:0034613,GO:0042221,GO:0042440,GO:0042441,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043324,GO:0043434,GO:0043473,GO:0043474,GO:0044237,GO:0044249,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0045184,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046907,GO:0047496,GO:0048066,GO:0048069,GO:0048072,GO:0048193,GO:0048475,GO:0048489,GO:0048490,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0051716,GO:0065007,GO:0070727,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072384,GO:0072594,GO:0072665,GO:0072666,GO:0080171,GO:0097479,GO:0097480,GO:0097708,GO:0098791,GO:0098796,GO:0098930,GO:0099003,GO:0099111,GO:0099514,GO:0099517,GO:0099518,GO:1901360,GO:1901362,GO:1901576,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701
Exons4
Evalue2.37e-127
EggNOG OGsCOG5030@1|root,KOG0936@2759|Eukaryota
Ec32 ortholog descriptionClathrin assembly complex, small subunit
Ec32 orthologEc-01_006410.1
Descriptionprotein transport
Cds size564
COG categoryU
BRITEko00000,ko00001,ko03036,ko04131,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789332.9298687-CDS-P-littoralis_Contig10:557586..5576551680789332.9298687-CDS-P-littoralis_Contig10:557586..557655Pylaiella littoralis U1_48CDSP-littoralis_Contig10 557587..557655 +
1680789332.9447682-CDS-P-littoralis_Contig10:558244..5584521680789332.9447682-CDS-P-littoralis_Contig10:558244..558452Pylaiella littoralis U1_48CDSP-littoralis_Contig10 558245..558452 +
1680789332.9598997-CDS-P-littoralis_Contig10:559027..5590981680789332.9598997-CDS-P-littoralis_Contig10:559027..559098Pylaiella littoralis U1_48CDSP-littoralis_Contig10 559028..559098 +
1680789332.972079-CDS-P-littoralis_Contig10:559508..5597241680789332.972079-CDS-P-littoralis_Contig10:559508..559724Pylaiella littoralis U1_48CDSP-littoralis_Contig10 559509..559724 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789332.9817133-UTR-P-littoralis_Contig10:559724..5607771680789332.9817133-UTR-P-littoralis_Contig10:559724..560777Pylaiella littoralis U1_48UTRP-littoralis_Contig10 559725..560777 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig10.140.1prot_P-littoralis_Contig10.140.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig10 557587..559724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig10.140.1

>prot_P-littoralis_Contig10.140.1 ID=prot_P-littoralis_Contig10.140.1|Name=mRNA_P-littoralis_Contig10.140.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=188bp
MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNY
LEGIIPEWGEGTKLIYRHYATLYFVFAVDAQESDLGILDLVQVFVEALDK
CFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILTAINDQNRLHT
ASNKVGLPPSGGISAHGRPSGGVGSGGPSGIPGMRTR*
back to top

mRNA from alignment at P-littoralis_Contig10:557587..560777+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig10.140.1 ID=mRNA_P-littoralis_Contig10.140.1|Name=mRNA_P-littoralis_Contig10.140.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3191bp|location=Sequence derived from alignment at P-littoralis_Contig10:557587..560777+ (Pylaiella littoralis U1_48)
ATGATTCGAGGCGTGATAATCGTTAACAACCATGGGAAGCCTCGCCTTGT
CAAGTTCTACCAAACAGTGGTGAGTCAGGGAAGCAAGCCTCCACTTAGGA
CTTGGGGGGCAGGGACAAAGCTTATTTCGCCGCTGCCAACTTCCGATAAC
AAAATCAAAATTTCGCCGCTTCGGGCTTCCGGCTTCCGAACACTGCTTTT
CGCTTTTCGCCTTCACACTCCACACCTCCACCCCTCCACACATCATTTGT
ATGAACAGCGCACCCAACTTCCTCTGTGTATTTGGTATTTGGCCCTTTGC
CCTCGGAGATGTTTGCATAATGCAAAGCCGGCGTTTTGGTGGTTGAGGTT
CTCACTGCTGTATGGCTACCCTCTTTTTCCATGATTCGTTTGTTGCGAGC
GTATCATGGGAGCTTTACACATCTTCGCGACTGGCACCTGGTTCATGCCG
GTACCTGGTGCTGCACCTGACCTCGTCCCACCTAATATTGGTACATCCAC
TACCTGGTGCATCATTGGATAGCCTACTGTTGATGATATCGGCCAAGCGG
TTACTTTTCATCACGGTGCACACCCACACACCCCCAACCCGTTATCCCTT
CAATTATTGAGTAAACAAACACCATCGAACAAGCCCGGTCAACCCTCTCC
GCGACCAGGTCGGTGAAGAAGCGCAGAAAAGCGTGATACAGCGTATCTTT
CAGCAGGTAGCCCAGCGGCCGGACTCGTTCTGCAACTACTTGGAAGGGAT
CATTCCCGAATGGGGGGAGGGCACGAAGCTTATCTACCGGCACTACGCTA
CGCTCTACTTCGTCTTCGCCGTGGACGCGCAGGAGAGCGATCTTGGCATC
CTCGACCTTGTGCAGGGTAAGATAAGAATACTGCTGTTGTACTTACCTGT
GTTGTTCATGGGCGTTAAACGTCGTTCCTTTACCAGGAACAGCAGCGGCT
GTGCTTTCTACTTGTATGTCGCAGTCCACGTACAACAGCAATTATTGCGG
CACACGCGCTTGTATCATATCATATGTGCTCGGAATATTCGAAAAAGCAT
AATTTAATTCTTGGCCAAATCCGTGCTGGTGAAGGTCTTCATTGTTGCGT
ACCGGTTGCCTTCTGTGTTACGAAACGCTCGTCTCTTGTCACTCGCTCCA
TTGTTACCACTGTTAATACTGTACTGCTGTGCGAAGACTTGCGAAGGCCT
TCTTCGTTAATCTTTCCGCCTGCACAGCGTTCCCTGCTTCTTTCATGTCA
CAACCGCTGTTCCTCGCAACACCTCACCCTGCTTATGCGTTCGGACAACC
ATGGTTATCCCTGCGGTGCTCTCTTATTCCCGCACGCCACACTATCGCAC
TTCGATTCCCTTGACAATCGCACCTCGTTTCCGTTGACGATCACTTCTTG
GCTGGCATCGTATGTATGGCATTCCTCCATGACACTGGAAGTCTTCGTGG
AGGCCCTCGACAAGTGCTTCGAGAACGTGTGCGAGTTGGACCTCATATTT
CACTCCGACAAGGTGCTTCGTGCATTCCGGAGTTCCTAGCTTGTCGTGTG
ATTTATATTGTTGTTTACATTTTCTCGCACGAGAGCCCTGATTTCTCGGG
CCCCATCGTCACGCGTGCGCGCCGTCGGGTTTCACTTCTACAATACCGCC
GCTGTACAGCGTACGCGAGCGCCACGTTGCGCGGTTATTGAAAAAGCATT
ACAGCCCGTTCTCGCTCGTGTTTACAATGAGCGATAGTATATCTGAGGGG
TTCCGGCTCGCCCGATGTACGTGCAAAGCAGCGATTGACAGCTTCGCAAG
AACTAGTTTGATAGGTATGAGGCGGTGGCTTCAGAATCACGTATTTACGT
TGTCTACACCACCCACCTTACACTCCCAAAACCTCTGCATCTTATTTTCT
TGCCCCTCCCCTCCGATTGAAGGTTCACTACGTCCTCGACGAGATTATTA
TGGGTGGCATGGTCCTCGAGACAAACATCAACCAGATCCTGACGGCGATC
AACGACCAAAACCGCCTCCACACCGCCTCCAACAAGGTCGGCCTGCCTCC
ATCGGGAGGCATCAGCGCGCACGGGAGGCCCTCCGGGGGAGTCGGGAGCG
GCGGGCCCTCGGGCATTCCCGGCATGCGAACGCGATGACAGCGGGAGTAG
GAGTAATAACTGGTGATTTGCATACCCCTATACGAATGCCTCGGCCGTGC
TCGGAAATGCAATGGTGGTGCGAATTGAGGGCCATGGTCCGATTCAGCGG
TTGTGGGCATTTCGAGTGAAGGTACAGGATTTTGCGCCAACTGCTGTGCG
TCGTCTCTCACGGGAGCGTTGTTCGCTGACCGCTGTTGTTCGAGCCGCGG
ACATTGTGGGTGGCGTGTTGTACGTTGCATCTTTCTCTGGGGACTTCTGG
CGTTGATTGCGCCAGGTGATGATGGAACTGTACGTGGGAAAAGAAATTCG
GCAAGGTCGAGAGAGTGAAATGAGGTCGAGAGGTTTTCGTGTTTTCTCGA
GACTACCAGGTGTCGGTGTTTGTTTCTCAAACTGTATTGTCAAAAATTTT
GCACTCTCGGCTGGCCAGCAGGAGGTTATCTGTTTTGGCTGGCTGAGTAA
TGTCACCAATTTGCAATTCATGTGTCGCTTTAACAGTACGATGGCTCTAC
TTGGGAAGTATATTTCCGTTGAGGTAGTTCGTGTGCTGCGCTTGGCCCTA
TGACGCGGGTGTGTGTATGCCAAAGGCGTGTCATAGATGCCCTCCGCAGC
CCCAGTACAGGCAACCACAACACAGGAAACTGCCGCCAAGAGGCTTTCTT
TCGTGAAGGAAACAAGCATTATTTCGTGACCGCTGTGGTGCAACTTCTCG
GAGGAAAATAGAATGTCAAAATGACATTCCCTCGGTCGAACTAGACCTCG
AAATGCTGAACGAAGTCATGTGAAGATTGAACGACATTTTCATGATATTT
TACTTATTTAGAAAGTTGTTAGACGACACGAAGATGGGCGGCAATTTTTT
TCCGCGGAGAGCACATAGGCGGTTTATTTTATTTTCCGGTTCACTGATAT
GGTGGTAATCGTTTCGTTGGAACTTGAGTCGCATGTGCCACATATTTAGA
GTAGCGGGGCCGACTAAGCCGGCCACTCTTGCTAAAAACTTGTATCGCTC
CAATGGTGGAAAATACCCGTGTGCCCCACTGCGGGGCCAAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig10:557587..560777+

>mRNA_P-littoralis_Contig10.140.1 ID=mRNA_P-littoralis_Contig10.140.1|Name=mRNA_P-littoralis_Contig10.140.1|organism=Pylaiella littoralis U1_48|type=CDS|length=564bp|location=Sequence derived from alignment at P-littoralis_Contig10:557587..560777+ (Pylaiella littoralis U1_48)
ATGATTCGAGGCGTGATAATCGTTAACAACCATGGGAAGCCTCGCCTTGT
CAAGTTCTACCAAACAGTGGTCGGTGAAGAAGCGCAGAAAAGCGTGATAC
AGCGTATCTTTCAGCAGGTAGCCCAGCGGCCGGACTCGTTCTGCAACTAC
TTGGAAGGGATCATTCCCGAATGGGGGGAGGGCACGAAGCTTATCTACCG
GCACTACGCTACGCTCTACTTCGTCTTCGCCGTGGACGCGCAGGAGAGCG
ATCTTGGCATCCTCGACCTTGTGCAGGTCTTCGTGGAGGCCCTCGACAAG
TGCTTCGAGAACGTGTGCGAGTTGGACCTCATATTTCACTCCGACAAGGT
TCACTACGTCCTCGACGAGATTATTATGGGTGGCATGGTCCTCGAGACAA
ACATCAACCAGATCCTGACGGCGATCAACGACCAAAACCGCCTCCACACC
GCCTCCAACAAGGTCGGCCTGCCTCCATCGGGAGGCATCAGCGCGCACGG
GAGGCCCTCCGGGGGAGTCGGGAGCGGCGGGCCCTCGGGCATTCCCGGCA
TGCGAACGCGATGA
back to top