mRNA_P-littoralis_Contig10.139.3 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig10.139.3 vs. uniprot
Match: A0A6H5KUZ7_9PHAE (Iwr1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ7_9PHAE) HSP 1 Score: 472 bits (1214), Expect = 4.620e-152 Identity = 364/726 (50.14%), Postives = 412/726 (56.75%), Query Frame = 1 Query: 58 MSHAPFRRKSRQAVEAAIS-HAASRK---PAPHLVVLRVKRKRGDAAVESLLVAPEERGYSEKEADM-PDRKRRAAHGAGSVEETLANLSLDAAADQHDKHQQQRN------------MRQPPKNRLCYKRVRTTEPDGSSNDDRSKEQHPSTPSVVAPPPNQ--AALGGDTSAPTVGGGDTWSGDGGRLDSLLSSRA---NSAFVSPPPRPAAVVDFMEVRRVRARAVTNARANSTNGGSPSARGGCEQQQPMKPSTGVASAVGSGNAAADFHVIDLQAVSLRD-NADMDVSSGVDKGEAFKGGA---PAKRTAAPILTPVERQMDEAIFTAFQTADMSNLRDVLTTSSSPSPAIVNYRRRLGDATTALMAAAFHGHLDTVRHLLSLGAKASLVDASGKSAALFAGMGGHRECFAELQRTADEEEGEQRALSKKHSSLKGGGGSGGR---DFVYDLYYFEPSASTSPTGGAPALERDGPYA----------TPTGRSKVGEKTP--DTSGGEPPVVRLCGIGPVDENAVGT-TADVELEFEHDSDWSELGN-GDDGEDPDSNSEGYYGNDYPEDEGDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEPYCRRVVETPTD-------------------------------------EDGISGDMGVSRSVESMPQALG---------DTALESTFHEGLGNANVFAWAPKR 1968
MS AP RRKSR+AV AA+ +AAS+K PAPHLVVLRVKRKRGDAAVESLLVA + G +E +M P+RKRRAA G S+ ET+A LSLD A+ + QQQ + ++ RL YKRVRTTEPDGS DR +E +P APP Q A GG+ GG GRLD+LL S+ NSA SPPP AAV D++EVRRV+ARAV NS S RGG +Q P S+G+A + A A+ HVIDL AV D +A MD D G A GGA AKR AAPILTPVERQMDEAIFTAFQT DMS+LRD+LTTSS PSPA VNYRRRLGDA+TALMAAAFHG L TVR+LLS+GAKA+LVDA G+SAALFAGM GHRECFAELQR AD+EE DFVYDLY++EP A S T G PA+ P A PT ++GEKT GG PPVVRL GIGPVDENAVGT A VELEFEHDSDWS LG GDDGEDPDSNSEGYYGNDYPEDEGDE NEP+ RRVV+ + SG +GV V+ MP A G T+ ES FH GLG A VFAW PKR
Sbjct: 1 MSQAPVRRKSRKAVAAAMEKNAASQKKPAPAPHLVVLRVKRKRGDAAVESLLVATTDEGERIEEQEMMPNRKRRAA-GTISIAETMAVLSLDKTAE--SQRQQQHSPXXXXXXXXXPAVKMQSPRRLVYKRVRTTEPDGSR--DRGEEGR--SPVAGAPPARQKRALDGGEE------GGXXXXXXXGRLDALLRSKGLNTNSASCSPPPPTAAVFDYLEVRRVKARAVGIVPKNSPAPVDSSGRGG-HKQHPSPQSSGLAPEGAATAAPANLHVIDLHAVGQADASAMMDTLVMGDAGAA--GGAHVATAKRAAAPILTPVERQMDEAIFTAFQTGDMSSLRDILTTSSYPSPAGVNYRRRLGDASTALMAAAFHGDLGTVRYLLSIGAKATLVDAHGRSAALFAGMRGHRECFAELQRVADQEEXXXXXXXXXXXXXXXXXXXXXXXXXDFVYDLYFYEPPAQAS-TVGPPAVGAPAPGAGEGAGTPSGAVPTSSGELGEKTTIDAADGGAPPVVRLSGIGPVDENAVGTMAAGVELEFEHDSDWSGLGEEGDDGEDPDSNSEGYYGNDYPEDEGDEEGAGISPYVYAGGSGSSCASENGSSSSDGNAGFDSDSD---NEPHYRRVVDVHEEFSRNFGSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXARRSGSGVVGVDGFVKRMPLASGRGDGRDGATGTSAESEFHAGLGEAGVFAWGPKR 706
BLAST of mRNA_P-littoralis_Contig10.139.3 vs. uniprot
Match: D7FQE4_ECTSI (Heat shock protein, mitochondrial protein import, putative mitochondrial translocase complex subunit, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQE4_ECTSI) HSP 1 Score: 387 bits (994), Expect = 5.150e-120 Identity = 266/455 (58.46%), Postives = 290/455 (63.74%), Query Frame = 1 Query: 373 PKNRLCYKRVRTTEPDGSSNDDRSKEQHPSTPSVVAPPPNQAALGGDTSAPTVGGGDTWSGDGGRLDSLLSSRA---NSAFVSPPPRPAAVVDFMEVRRVRARAVTNARANSTNGGSPSARGGCEQQQPMKPSTGVASAVGSGNAAADFHVIDLQAVSLRDNADM-DVSSGVDKGEAFKGGA---PAKRTAAPILTPVERQMDEAIFTAFQTADMSNLRDVLTTSSSPSPAIVNYRRRLGDATTALMAAAFHGHLDTVRHLLSLGAKASLVDASGKSAALFAGMGGHRECFAELQRTADEEEGEQRALSKKHSSLKGGGGSGGR---DFVYDLYYFEPSASTSPTG----GAPALERDGPY-----ATPTGRSKVGEKTPDTS---GGEPPVVRLCGIGPVDENAVGT-TADVELEFEHDSDWSELGN-GDDGEDPDSNSEGYYGNDYPEDEGDE 1665
P RL YKRVRTTEPDGS DR E P +A GG+ GG GRLD+LL S+ N A SPPP AAV D++EVRRV+ARAV R NS S RGG EQ P S+G+AS + A A+ HVIDL AV D + M D S D G A GGA AKR AAPILTP ERQMD+AIFTAFQT DMS+LRD+LTTSS PSPA VNYRRRLGDA+TALMAAAFHG L TVRHLLS+GAKA+LVDA G+SAALFAGM GHRECFAELQR AD+EE DFVYDLYY+EP+A S G GAPA A PT K+GEK + GG PPVVRL GIGPVDENAVGT A VELEFEHDSDWS LG GDDGEDPDSNSEGYYGNDYPEDEGDE
Sbjct: 3 PPRRLVYKRVRTTEPDGSR--DRGDEGRPPVAGTPIARQKRALDGGEE------GGGXXXXXXGRLDALLRSKGLNTNYASCSPPPPTAAVFDYLEVRRVKARAVGIVRKNSPAPADSSGRGGHEQD-PSPQSSGLASDGAATAAPANLHVIDLHAVGQADASTMMDTSVMGDAGAA--GGAHVSTAKRAAAPILTPAERQMDKAIFTAFQTGDMSSLRDILTTSSYPSPAGVNYRRRLGDASTALMAAAFHGDLGTVRHLLSIGAKATLVDAHGRSAALFAGMRGHRECFAELQRVADQEEXXXXXXXXXXXXXXXXXXXXXXXXXDFVYDLYYYEPAAQASTVGPPAVGAPAXXXXXXXXXPSAAVPTSCGKLGEKQTTINAAGGGAPPVVRLSGIGPVDENAVGTMAAGVELEFEHDSDWSGLGEEGDDGEDPDSNSEGYYGNDYPEDEGDE 446
BLAST of mRNA_P-littoralis_Contig10.139.3 vs. uniprot
Match: A0A835YSD4_9STRA (Alkaline-phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSD4_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 1.330e-15 Identity = 96/261 (36.78%), Postives = 127/261 (48.66%), Query Frame = 1 Query: 901 GAPAKRTAAPILTPVERQMDEAIFTAFQTAD-MSNLRDVLTTSSSPSPAIVNYRRRLGDATTALMAAAFHGHLDTVRHLLSLGAKASLVDASGKSAALFAGMGGHRECFAELQRTADEEEGEQRALSKKHSSLKGGGGSGGRDFVYDLYYFEPSASTSPTGGAPALERDGPYATPTGRSKVGEKTPDTSGGEPPVVRLCGIGPVDENAVGT------TAD--VELEFEHDSDWSELGNGDDGEDPDSNSEGYYGNDYPEDE 1656
G +R +LTP+ER DEAI+ AF+ + L +VL A VN+ R D TT LMAAA+ G V LL+LGA +VD SG +AA A M GH L + + +RA + + L G G D+VYD Y F+ + + GG P P + + + SGGE G D AV + TA+ VEL+FE+DSDWS+L D D DSN+E +Y NDYPEDE
Sbjct: 871 GQVLERRPMRVLTPMERLTDEAIWHAFRDGGGAARLLEVL----QQGGAGVNFTRTHADGTTPLMAAAYCGDGAVVTRLLALGAGPCVVDYSGNTAAKLASMNGHAAVARRL--LLAQAQWCERARGGEDADL----GEGDVDYVYDFYCFDGTKAAFGAGGVGEKGVIWPANLPV--VHIAGQFSEGSGGEG-----GKRGGEDRGAVASDIYSFATAEGPVELQFEYDSDWSDLKEASD--DEDSNAEDFYRNDYPEDE 1112
BLAST of mRNA_P-littoralis_Contig10.139.3 vs. uniprot
Match: F0W0W7_9STRA (Angioassociated migratory cell protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W0W7_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 1.370e-7 Identity = 80/255 (31.37%), Postives = 114/255 (44.71%), Query Frame = 1 Query: 913 KRTAAPILTPVERQMDEAIFTAFQTADMSNLRDVLTTSSSPS--PAIVNYRRRLGDATTALMAAAFHGHLDTVRHLLSL-GAKASLVDASGKSAALFAGMGGH---RECFAELQRTADEEEGEQRALSKKHSSLKGGGGSGGRDFVYDLYYFEPSASTSPTGGAPALERDGPYATPTGRSKVGEKTPDTSGGEPPVVRLCGIGPVDENAVGTTADVELE-FEHDSDWSELGNGDDGEDPDSNSEGYYGNDYPEDE 1656
K A +L P++R++DEAI+ AFQ D S +L + P ++N+ R L D +T LMAAAFHG +D + LL + G K L D G +A+ FA H +E + T E + FVYDLY E +TS T +L DG ++ ++ + G+ N D E+E F DSD S + +DGE +SN E YY NDYP++E
Sbjct: 648 KLGAIRVLNPMQREVDEAIWKAFQQNDFSAFFQILHCEKAEQSMPKVLNFARPL-DGSTVLMAAAFHGRVDVIESLLQVTGIKVLLRDLEGSAASDFAARNKHLSVQEALIACETTERE-----------------------KAFVYDLYCVESVPTTSTT---ESLANDGLDIPVVHVNETVQQW-----------LVDGL-----NNFQKAEDGEIEDFVFDSDNS-IDQDEDGESLNSNDEDYYLNDYPDEE 858
BLAST of mRNA_P-littoralis_Contig10.139.3 vs. uniprot
Match: K8YQM2_NANGC (Yth domain containing 2 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YQM2_NANGC) HSP 1 Score: 54.7 bits (130), Expect = 2.770e-5 Identity = 42/97 (43.30%), Postives = 54/97 (55.67%), Query Frame = 1 Query: 943 VERQMDEAIFTAFQTADMSNLRDVLTTSSSPSPAIVNYRRRLGDATTALMAAAFHGHLDTVRHLLSLGAKASLVDASGKSAALFAGMGGHRECFAEL 1233
+ +MD AI+ AF+ D+ D + + VN+ R TALMAAAFHG L TV+ LLSLGA L A G +A+ FA H+EC AEL
Sbjct: 10 LSERMDRAIWDAFK--DVKKGFDPILALVQHAGVSVNFSRP-AKGETALMAAAFHGKLATVKELLSLGADPCLKTADGHTASTFANKYNHKEC-AEL 102
BLAST of mRNA_P-littoralis_Contig10.139.3 vs. uniprot
Match: A0A024G006_9STRA (Iwr1 domain-containing protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024G006_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 7.250e-5 Identity = 51/158 (32.28%), Postives = 76/158 (48.10%), Query Frame = 1 Query: 913 KRTAAPILTPVERQMDEAIFTAFQTADMSNLRDVLTTSSSPSPA--IVNYRRRLGDATTALMAAAFHGHLDTVRHLLSL-GAKASLVDASGKSAALFAGMGGHRECFAELQRTADEEEGEQRALSKKHSSLKGGGGSGGRDFVYDLYYFEPSASTSPT 1377
K A +L P +R++DEAI+ AFQ+ D S L ++S ++N++R L D +TALMAAAFHG +D + LL + G K D G +A+ FA H Q AL ++ + + +VYDLY + T+ T
Sbjct: 624 KLGAIRVLNPAQREVDEAIWKAFQSNDFSAFFHFLHRANSEISMLKVLNFQRPL-DGSTALMAAAFHGRVDVIESLLGVTGIKVLQRDYEGSTASNFAARNKHTNI--------------QEALIACETTERE------KSYVYDLYCIDSVPKTTTT 760
BLAST of mRNA_P-littoralis_Contig10.139.3 vs. uniprot
Match: A0A7S3Y7Y8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y7Y8_HETAK) HSP 1 Score: 56.2 bits (134), Expect = 8.120e-5 Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 1 Query: 958 DEAIFTAFQTADMSNLRDVLTTSSSPSPAIVNYRRRLGDATTALMAAAFHGHLDTVRHLLSLGAKASLVDASGKSAA 1188
DEAIF AF+ + + D+L + VN++R + D TTALMAAA+HGH VR LL+ GA SL DA+G+ AA
Sbjct: 187 DEAIFHAFRRGGTA-IEDLLGILQRAGVS-VNFQRPVSDDTTALMAAAYHGHAGAVRALLAAGADPSLRDAAGRDAA 261
BLAST of mRNA_P-littoralis_Contig10.139.3 vs. uniprot
Match: A0A484EGW7_BRELC (Probable RNA polymerase II nuclear localization protein SLC7A6OS n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGW7_BRELC) HSP 1 Score: 57.4 bits (137), Expect = 8.570e-5 Identity = 48/146 (32.88%), Postives = 67/146 (45.89%), Query Frame = 1 Query: 931 ILTPVERQMDEAIFTAFQTADMSNLRDVLTTSSSPSPAIVNYRRRLGDATTALMAAAFHGHLDTVRHLLSLGAKASLV-DASGKSAALFAGMGGHRECFAELQRTADEEEGEQRALSKKHSSLKGGGGSGGRDFVYDLYYFEPSAS 1365
+L P ER++DEAI+TAF+ D + + T +R D + LMAAA HG D + LL G + L D G +AA+FA GGH AD E+ +H +D+VYD+Y + SAS
Sbjct: 218 VLNPYERELDEAIWTAFRANDFAPFFRIYYTRRQDGLVDPVAFQRTADGSNILMAAALHGRSDVIEVLLRSGTTSVLQQDFVGVTAAIFARRGGH----------ADVEKALLACEQAEHE----------KDYVYDVYCVDMSAS 343 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig10.139.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig10.139.3 >prot_P-littoralis_Contig10.139.3 ID=prot_P-littoralis_Contig10.139.3|Name=mRNA_P-littoralis_Contig10.139.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=638bp MSHAPFRRKSRQAVEAAISHAASRKPAPHLVVLRVKRKRGDAAVESLLVAback to top mRNA from alignment at P-littoralis_Contig10:547637..557392- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig10.139.3 ID=mRNA_P-littoralis_Contig10.139.3|Name=mRNA_P-littoralis_Contig10.139.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=9756bp|location=Sequence derived from alignment at P-littoralis_Contig10:547637..557392- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig10:547637..557392- >mRNA_P-littoralis_Contig10.139.3 ID=mRNA_P-littoralis_Contig10.139.3|Name=mRNA_P-littoralis_Contig10.139.3|organism=Pylaiella littoralis U1_48|type=CDS|length=1914bp|location=Sequence derived from alignment at P-littoralis_Contig10:547637..557392- (Pylaiella littoralis U1_48)back to top |