Homology
BLAST of mRNA_P-littoralis_Contig10.138.1 vs. uniprot
Match:
A0A6H5JIG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG7_9PHAE)
HSP 1 Score: 155 bits (393), Expect = 2.160e-40
Identity = 91/238 (38.24%), Postives = 129/238 (54.20%), Query Frame = 1
Query: 190 DGVTADECSSVRTLGWTLADPLRGLTKTPISPGYSGPLAEARCEDELTKRLLCGAQVWDGGNRGVPLQTRKVGACFCDALALGVFGGGLEAADDAWQYSLPIRVAIVRTALRHMPQFLN-LEY---YTTLHAYDAAVLDEVTTIGCPVTPVLPPMVARVFYLLGVAEMASEFATCQQAAVPWASEALRVKIRPFHPGNSVEVEDGWACVGGQWSKQEQGRDKKGACGVSSVVIKSRCV 891
DGV + C + + D L I PGY G L D + LL G + DGG RGVP++ R GAC+ +A+ LG+FG D+A SL +RVA++R A+ H +F++ EY Y TL AY A + ++GC VL V+RV YLL V E+A EF+ QQAA+PW ++A +K+R FHPG S++ +G A G+WSK+ G K GV + + C+
Sbjct: 31 DGVELEACLGIIQHAKSFKDVLCSEDTDVILPGYEGLLRRPMRVDRTAEDLLNGGEGADGGGRGVPVKVRGNGACYFNAVPLGIFGTKCNTPDEALGLSLSVRVAVIRAAIVHFEEFISGPEYGGFYCTLQAYSAKEVKAAWSLGCDTPEVLTESVSRVLYLLAVREVAGEFSDSQQAAMPWTAQAFGMKMRCFHPGGSMKHVEGGASFAGKWSKELIGPLKP--AGVEPTIYLTMCI 266
BLAST of mRNA_P-littoralis_Contig10.138.1 vs. uniprot
Match:
A0A6H5JQB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQB3_9PHAE)
HSP 1 Score: 92.8 bits (229), Expect = 1.860e-20
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = -1
Query: 286 TDFPCLKRHPSIPTVPNLGPTKQPLRQFVLASGFGEWARVS 408
TDFPCLKRHPSIPTVPNLGPTKQPLRQFVLASGFGEWARVS
Sbjct: 21 TDFPCLKRHPSIPTVPNLGPTKQPLRQFVLASGFGEWARVS 61
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig10.138.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 2.16e-40 / Id = 38.24 Expect = 1.86e-20 / Id = 100.00 Sequence A0A6H5JIG7_9PHAE A0A6H5JQB3_9PHAE back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 0 Model size 924 Hectar predicted targeting category other localisation Exons 4 Cds size 924
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789332.7578363-CDS-P-littoralis_Contig10:535605..535689 1680789332.7578363-CDS-P-littoralis_Contig10:535605..535689 Pylaiella littoralis U1_48 CDS P-littoralis_Contig10 535606..535689 + 1680789332.7700365-CDS-P-littoralis_Contig10:536427..536628 1680789332.7700365-CDS-P-littoralis_Contig10:536427..536628 Pylaiella littoralis U1_48 CDS P-littoralis_Contig10 536428..536628 + 1680789332.7821445-CDS-P-littoralis_Contig10:536871..537352 1680789332.7821445-CDS-P-littoralis_Contig10:536871..537352 Pylaiella littoralis U1_48 CDS P-littoralis_Contig10 536872..537352 + 1680789332.7918878-CDS-P-littoralis_Contig10:537496..537654 1680789332.7918878-CDS-P-littoralis_Contig10:537496..537654 Pylaiella littoralis U1_48 CDS P-littoralis_Contig10 537497..537654 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig10.138.1
>prot_P-littoralis_Contig10.138.1 ID=prot_P-littoralis_Contig10.138.1|Name=mRNA_P-littoralis_Contig10.138.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=308bp
QHRHAATRATRRAQHLTATCGLASRSLAMSHPGRATNEAANNEWREVLAT back to top mRNA from alignment at P-littoralis_Contig10:535606..537654+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig10.138.1 ID=mRNA_P-littoralis_Contig10.138.1|Name=mRNA_P-littoralis_Contig10.138.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2049bp|location=Sequence derived from alignment at P-littoralis_Contig10:535606..537654+ (Pylaiella littoralis U1_48)CAGCATCGACACGCCGCGACGCGCGCGACACGGAGGGCACAGCACCTGAC
AGCCACCTGCGGGCTAGCGTCGAGGAGTCTAGCG GTGAGCGTTGGTGGCG
CGGATAAGGTGGTCCCTACGGTGTGTTGCTGCGTCCTTGGTGTGCAGCAA
ACAGCAGCAGCAGTACAGCAAAGTGGTGCGCGTGCGTGTCTCCCAATACA
TGGTGCCGCGCAACGACTGCACGTGCACAACGAGGATGTATGCTTTTGCC
GATACCAGCAGGCGGTTTTCCTCTGCGACCGCAGCTGCCGTTCGCCTGTT
TGCGTGTGGCTTAGTCTATTGCATGCTCGAACACAGCAGACACTTCTCGG
GATGTTTTGCGTACCAAAGAACATGAGACATGCGCTCTGCTCTGCTCTGC
CATCAAACCGCAGCACACAAAGCGGTCACTGCTGTGCTGCTGGCTGGGTT
AGGGTCGCTAGTCCGGACCCAGACCATGTGTAGTGTTTGCCGTGTGTTTC
GCCATATCGCACGCTGTTTGTGGCGCGAGGGTAACACCTCAAACAGCTGC
TCTGTGGTTTAAAAATTCAAACCAGCAGCAGCGGCACCAACATGCCAAGT
ACACATCACTTCGCATGTTCCCCGCGGCCGAAGCGTGTTGTTCACCTACC
ACACCATGCTTTATGTGTAGAGGGCTAGTCCTCTACACCCCACGAGCTCT
GCCACACACCGACCTGTCGACCGTAGTGTTCTGCAACAGTAGTATAGACA
AGAAGGTTCGTAAGACGTGCGCACATCGACGTTTGTTCCGCCCCGCTGTT
GAACTGCTATGCCCCGCTGTAGATGTCACATCCGGGACGGGCGACCAACG
AGGCGGCGAACAATGAGTGGAGGGAGGTTTTGGCTACAATAAAGGAGGAA
ATACTAGCCCTCGTAGCAAACAAGAAGGACGGCGTGACTGCTGACGAATG
TTCCAGTGTTCGGACGCTTGGATGGACCTTGGCAGATCCTCTCCGTGGGC
TCACGAAGACCCCAATCTCACCG GTGAGGAAGCTGTAGCCGTGCTCGCGC
TGGGTAGCGGGTTGGGGCTTGGGGTAAGAAATCAAAGGAGACGGCAGTGA
TAACAGTAGACTCGTTGTGTGAAGGCGGTGGGATCAGGATTAAAACACAG
CAGTATTTTAAACACGCATCATCCATCCTCGGAAATGTGGGAGTTTGATG
TACAAGTAGTTGAGTTCCTCAACTCCAACCAAACGACTGAACTTATATTT
GGCTTCTTTTGCACAGGGATACTCTGGCCCACTCGCCGAAGCCCGATGCG
AGGACGAACTGACGAAGCGGTTGCTTTGTGGGGCCCAGGTTTGGGACGGT
GGGAATAGAGGGGTGCCTCTTCAGACAAGGAAAGTCGGTGCCTGCTTCTG
TGATGCGCTCGCGTTGGGGGTGTTTGGTGGTGGGTTGGAGGCAGCGGATG
ACGCGTGGCAGTACTCGCTACCCATCCGTGTGGCCATCGTCCGCACCGCC
CTGCGGCACATGCCGCAATTCCTCAACTTGGAATACTACACAACACTACA
CGCCTACGACGCCGCTGTGCTTGACGAGGTCACAACGATCGGCTGCCCCG
TCACGCCCGTGCTACCGCCGATGGTAGCGCGTGTGTTTTACCTGCTCGGT
GTCGCGGAGATGGCCAGCGAGTTTGCGACCTGTCAGCAAGCGGCAGTACC
TTGGGCAAGCGAGGCTCTCCGGGTCAAGATTCGACCCTTCCACCCAG GTA
AACCATGGTTTTATCAGTTGTTCTGGGGTGTCGCGGAGTCGGTATGTACC
GAACCAAAAAAAATGAGCTCGGTGCTAATAACCCAATACCGAACCAAACA
AATTTGCTCGATGCTAATAACTCAATCGCGTGTGGACGCAGGCAATTCTG
TGGAGGTTGAGGATGGGTGGGCATGCGTCGGGGGTCAATGGAGCAAGCAA
GAGCAGGGCAGGGACAAGAAGGGGGCGTGTGGCGTGTCTAGTGTGGTGAT
AAAGTCGCGATGCGTTGCTCTGCTGCGTGCGAGTTCAAAAGAGATGTAG back to top Coding sequence (CDS) from alignment at P-littoralis_Contig10:535606..537654+
>mRNA_P-littoralis_Contig10.138.1 ID=mRNA_P-littoralis_Contig10.138.1|Name=mRNA_P-littoralis_Contig10.138.1|organism=Pylaiella littoralis U1_48|type=CDS|length=924bp|location=Sequence derived from alignment at P-littoralis_Contig10:535606..537654+ (Pylaiella littoralis U1_48) back to top