mRNA_P-littoralis_Contig10.130.1 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-littoralis_Contig10.130.1 vs. uniprot
Match: D7FQE1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQE1_ECTSI) HSP 1 Score: 158 bits (399), Expect = 3.100e-43 Identity = 78/100 (78.00%), Postives = 88/100 (88.00%), Query Frame = 1 Query: 4 ICLIYEDLVGEYSLATRLWLFILFQWVAFIFMAALGATVPDTPEDVTIQLQRTAFLSSKVVDRVSDEIDDDVRGIDEADLKNVSVTISPAMSPTGQRLQR 303 ICLIYEDLVGEYSLATRLWLFILFQWVAFIFMA LGATVPD PEDVTIQ QRT FLSSK+VD+++DE+D+D++ ID+A L V VTISPAMSP G+ L R Sbjct: 332 ICLIYEDLVGEYSLATRLWLFILFQWVAFIFMAGLGATVPDVPEDVTIQQQRTMFLSSKMVDKIADEMDEDMQNIDQAALDGVKVTISPAMSPKGEELHR 431
BLAST of mRNA_P-littoralis_Contig10.130.1 vs. uniprot
Match: A0A6H5KW18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW18_9PHAE) HSP 1 Score: 155 bits (393), Expect = 1.120e-40 Identity = 78/100 (78.00%), Postives = 87/100 (87.00%), Query Frame = 1 Query: 4 ICLIYEDLVGEYSLATRLWLFILFQWVAFIFMAALGATVPDTPEDVTIQLQRTAFLSSKVVDRVSDEIDDDVRGIDEADLKNVSVTISPAMSPTGQRLQR 303 ICLIYEDLVGEYSLATRLWLFILFQW+AFIFMA LGATVPD PEDVTIQ QRT FLSSK+VD+V+DE+DDD++ ID+A L V VTISPAMS G+ L R Sbjct: 852 ICLIYEDLVGEYSLATRLWLFILFQWLAFIFMAGLGATVPDVPEDVTIQQQRTMFLSSKIVDKVADEMDDDMQKIDQAALDGVKVTISPAMSSKGEELHR 951
BLAST of mRNA_P-littoralis_Contig10.130.1 vs. uniprot
Match: A0A7S3HR83_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HR83_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 1.160e-12 Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 1 Query: 31 GEYSLATRLWLFILFQWVAFIFMAALGATVPDTPEDVTIQLQRTAFLSSKVVDRVSDEIDDDVRG 225 +YS R W+FI FQWV F + +PD PE++ IQLQR AF+ K++D+V DE++DDV G Sbjct: 118 NDYSTTVRFWIFIAFQWVCFSLQYIIMEAIPDVPEEIDIQLQRAAFIERKLIDKVGDELNDDVLG 182
BLAST of mRNA_P-littoralis_Contig10.130.1 vs. uniprot
Match: A0A482SKA7_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SKA7_9ARCH) HSP 1 Score: 69.3 bits (168), Expect = 1.520e-10 Identity = 36/71 (50.70%), Postives = 46/71 (64.79%), Query Frame = 1 Query: 22 DLVGEYSLATRLWLFILFQWVAFIFMAALGATVPDTPEDVTIQLQRTAFLSSKVVDRVSDEIDDDVRGIDE 234 D++ YSL R+W+FI FQWV + A VPD PEDVTIQL+RT F + KVV++V DE D+ DE Sbjct: 441 DVLWGYSLQGRVWIFIGFQWVLIMCQFVAQAIVPDIPEDVTIQLERTHFYNEKVVEKVEDEDYDETEADDE 511
BLAST of mRNA_P-littoralis_Contig10.130.1 vs. uniprot
Match: A0A7S3GYD5_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GYD5_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 9.570e-10 Identity = 27/52 (51.92%), Postives = 36/52 (69.23%), Query Frame = 1 Query: 49 TRLWLFILFQWVAFIFMAALGATVPDTPEDVTIQLQRTAFLSSKVVDRVSDE 204 TR W FI FQW+ F A + +PD PE++ IQLQRTAF+ K++DR+ DE Sbjct: 109 TRYWCFIGFQWICFALQAFIMVAIPDVPEEINIQLQRTAFIQRKLIDRIPDE 160
BLAST of mRNA_P-littoralis_Contig10.130.1 vs. uniprot
Match: A0A7S2G4I0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G4I0_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 3.910e-8 Identity = 27/51 (52.94%), Postives = 38/51 (74.51%), Query Frame = 1 Query: 37 YSLATRLWLFILFQWVAFIFMAALGATVPDTPEDVTIQLQRTAFLSSKVVD 189 Y L+TR+W+FILFQ+V M L A++PDTPEDV +Q++RTAF +V+ Sbjct: 666 YKLSTRIWMFILFQYVLVALMTGLDASIPDTPEDVEMQVERTAFFEKFIVE 716
BLAST of mRNA_P-littoralis_Contig10.130.1 vs. uniprot
Match: A0A7S4E8J5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E8J5_9STRA) HSP 1 Score: 54.3 bits (129), Expect = 2.440e-5 Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 1 Query: 52 RLWLFILFQWVAFIFMAALGATVPDTPEDVTIQLQRTAFLSSKVVDRVSDEIDDD 216 R + F Q+ F M + VPDTPEDV IQL+R AF+ SK++DR DE DD Sbjct: 690 RAFAFFACQYFVFALMLGIAVAVPDTPEDVEIQLKRKAFICSKLLDRTPDEESDD 744 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig10.130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig10.130.1 >prot_P-littoralis_Contig10.130.1 ID=prot_P-littoralis_Contig10.130.1|Name=mRNA_P-littoralis_Contig10.130.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=74bp MAALGATVPDTPEDVTIQLQRTAFLSSKVVDRVSDEIDDDVRGIDEADLKback to top mRNA from alignment at P-littoralis_Contig10:499210..501010- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig10.130.1 ID=mRNA_P-littoralis_Contig10.130.1|Name=mRNA_P-littoralis_Contig10.130.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1801bp|location=Sequence derived from alignment at P-littoralis_Contig10:499210..501010- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig10:499210..501010- >mRNA_P-littoralis_Contig10.130.1 ID=mRNA_P-littoralis_Contig10.130.1|Name=mRNA_P-littoralis_Contig10.130.1|organism=Pylaiella littoralis U1_48|type=CDS|length=222bp|location=Sequence derived from alignment at P-littoralis_Contig10:499210..501010- (Pylaiella littoralis U1_48)back to top |