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Homology
BLAST of mRNA_P-littoralis_Contig10.116.1 vs. uniprot
Match: D7FQE0_ECTSI (Polynucleotide adenylyltransferase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQE0_ECTSI) HSP 1 Score: 80.9 bits (198), Expect = 7.390e-14 Identity = 41/52 (78.85%), Postives = 44/52 (84.62%), Query Frame = 1 Query: 1 MPRSAPAQHHFGAVISDREPEKKDEEASKELEKFLKAMGLYENEEGSRRRQV 156
MPR AP Q HFGAVISDREPE KD AS+ELEKFLKAMGLYEN EGS+RR+
Sbjct: 1 MPRLAPMQQHFGAVISDREPESKDLAASQELEKFLKAMGLYENAEGSKRRKA 52
BLAST of mRNA_P-littoralis_Contig10.116.1 vs. uniprot
Match: A0A6H5KWQ1_9PHAE (Polynucleotide adenylyltransferase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ1_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 3.020e-13 Identity = 41/55 (74.55%), Postives = 44/55 (80.00%), Query Frame = 1 Query: 1 MPRSAPAQHHFGAVISDREPEKKDEEASKELEKFLKAMGLYENEEGSRRRQVKIK 165
MPR AP Q HFGAVISDREPE KD ASKEL+KFLKAMGLYEN EG RRQ ++
Sbjct: 1 MPRLAPMQQHFGAVISDREPESKDLVASKELKKFLKAMGLYENAEGRTRRQAVLR 55
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig10.116.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
| Match Name | E-value | Identity | Description | |
|---|
| D7FQE0_ECTSI | 7.390e-14 | 78.85 | Polynucleotide adenylyltransferase (Fragment) n=1 ... | [more] |
| A0A6H5KWQ1_9PHAE | 3.020e-13 | 74.55 | Polynucleotide adenylyltransferase (Fragment) n=1 ... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Seed ortholog | 2880.D7FQE0 |
| PFAMs | 2_5_RNA_ligase2,DUF504,Exo_endo_phos,NTP_transf_2,PAP_RNA-bind,PAP_central |
| Model size | 740 |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K14376 |
| KEGG Pathway | ko03015,map03015 |
| Hectar predicted targeting category | no signal peptide or anchor |
| GOs | GO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004652,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005847,GO:0005849,GO:0006139,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0010468,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0017076,GO:0019219,GO:0019222,GO:0030145,GO:0030554,GO:0031123,GO:0031124,GO:0031323,GO:0031440,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070013,GO:0070566,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1903311 |
| Exons | 2 |
| Evalue | 3.18e-17 |
| EggNOG OGs | COG5186@1|root,KOG2245@2759|Eukaryota |
| EC | 2.7.7.19 |
| Description | polynucleotide adenylyltransferase activity |
| Cds size | 174 |
| COG category | A |
| BRITE | ko00000,ko00001,ko01000,ko03019 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789332.3351865-CDS-P-littoralis_Contig10:477356..477509 | 1680789332.3351865-CDS-P-littoralis_Contig10:477356..477509 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig10 477357..477509 + |
| 1680789332.349455-CDS-P-littoralis_Contig10:481593..481614 | 1680789332.349455-CDS-P-littoralis_Contig10:481593..481614 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig10 481594..481614 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789332.3601255-UTR-P-littoralis_Contig10:481614..482180 | 1680789332.3601255-UTR-P-littoralis_Contig10:481614..482180 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig10 481615..482180 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig10.116.1 >prot_P-littoralis_Contig10.116.1 ID=prot_P-littoralis_Contig10.116.1|Name=mRNA_P-littoralis_Contig10.116.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=58bp
MPRSAPAQHHFGAVISDREPEKKDEEASKELEKFLKAMGLYENEEGSRRR
QVKIKGN* back to topmRNA from alignment at P-littoralis_Contig10:477357..482180+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig10.116.1 ID=mRNA_P-littoralis_Contig10.116.1|Name=mRNA_P-littoralis_Contig10.116.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4824bp|location=Sequence derived from alignment at P-littoralis_Contig10:477357..482180+ (Pylaiella littoralis U1_48)
ATGCCGCGATCGGCCCCGGCGCAGCATCACTTCGGGGCGGTCATATCGGA
CCGCGAGCCGGAGAAGAAGGATGAGGAAGCGTCAAAAGAGCTCGAGAAGT
TTCTGAAAGCGATGGGGCTGTACGAGAACGAAGAGGGCTCACGAAGGCGG
CAGGTGTGAGAGGCGTTTCGCGTGTGATGTTGGTGTTTTGGAATGTTATA
CGTATGGTGTGTGTGTTTTGTGTGTGTGCGGTTGTGTTTTGAGTTTGCAG
AGGAGTGAGACAGATTGTAGAGAAAGAAGAGGACAGAGAAGAAGAGAGCT
CGCGGTGCAGCCTACGATACAAGCACAAGCACACACAATCCTCTCGGAGT
GAAGTACCGACAGCCTTCGAGTTGTTCCGGATTTTTTCGCGAACGTGAGC
CCGAACGTTGGCGATTTTTGATCGGGGTATTTTATTTTATTTTCTGTGGA
GTTGCACCTTTCCCGATAAGTGCAGTATTACTCCGAGTCATCCTACAGAA
TCATATGTATGATTCTACTTCGTACTACCGGTAGTGCTCCGTAAACGGAG
TACCGGAGTGCACAGTCAGCAGTGCTGCTCTACCTGCTGCTGTACTCGTA
CCGGTATTACTTTTCTGAAGGATATTCCACCACAGCAGCAATACTGCTGT
CTGTAGTAGTAGCGTGGAGCACACGACGCACACACATCGCAATCATGTGC
TCTAGGTGGTGTGTCGTTGTCGTCCTACTGGGAGCGCGTGCGCTCGTCTA
TTTTGGTACGTACCGTAATTGTGCGGGTCATCGCACCCCTCGGGGTTTTG
GCACCCATCGGGGTTATGGCACCGGGGTGCGAAAAAAAACACGAGAAAAA
AATATTTAATTCTATTTTCGCACCCCCGTCGGGGTTATCGCACCCGGGTG
CGATAACCCCGACAAAAATTCAAAATTGAGTGCTGCGGTGACGCGCCACG
CCAACATCGTATGTATGTACCGTATGCAAACCTACCGTATGTTTCTTCCA
GGTAGTTGCGATCGGTGAAAGATCAATCCATCACGTATCATTATCGCGCC
GACGCACGCGTTCAAATACCGCAAGTCATCGTATTAAAACTAGGTACCGG
TACCTGCCAACCTGACAAACACCGTTCCGACAACGAGGAGCGATTGGTTC
AACACACACCGATACAAAACCGATATTGCACGGGACATTTACCTAAGGCA
AACAACACTCCGCACCATCAGTGTTCATCCTTGTGCCACACGCCGCACCC
AACTCGCTTTCGGCCCCGTAACCTTCCTTCCAGCCAGCAACAATTAGTGT
ACCTAGAACGATCCCCGCATCTATCTAGGTACTTTGTCCTCAACTACCGG
CTGATAGCTTCACAGCTCAATCTCTCCCTCTCCTTCCTCGCCCCCATCGC
CCAAGAACTCTATATCGCTATCATCTTCCAGCAGCTCCACATCGCTGTCG
CCACCCTCCGGTGTCTGAAGGTGTGCGTTACTACGCCGTTCATTTACAAC
AGAGCGGGTGGTAGCTGGGGGCCAGTGAGCCGCTGTGGTGGTATTCAGTA
TCGCACCCATCGGGGTTATCGCACCGGGGTGCATGTGTGTAGCACCCATG
CCCCAGTAGGGCCGGAATATTTGATTCAGCTCCGCACCCATCGGGGTCAT
CGCACCGGGGTGCGCAAAAACCACCAAGAACGAAACATTTAATTGTATTA
TCGCACCCCTGCCGGGGTTATCGCACCCATCGGGGTTATCGCACCGGGGT
GCGAAAAAAAAATCAAGAAAGAAACATTTAAAATCGCGATCGCACCCGGT
GCGATGACCCGCACAATTACGGTAATTGCAGTCGAAGCACTTCGTGCTCT
CACAGCAGTTAGTTCTTGTATTTGGATGGACTAAAATACACCGGTGTACA
CGTATCTTTTTTCATCCCATATACACCGGGACACGAGAAATACGAAGTAT
TGGACATTACAGAGAAGTACTCGAACGACATCCGTACAAGTATAACATCA
TACATATCATATCATGTGATTTTTTTTCCCCCTAGCACGATATGTGCCTG
GTTTTTGACCACGGGCTAGACTGCGGCGGTAGTGAACTAATGTGAGAATG
AACAACAACGATGCGATGCTTCGAATTGCTGGAATTATTGCATTATTCAG
CAACTCTCCGCACTTCGAAGCACTTAAATATTACTCCGGAGTAATACTTA
AAGTGTGTGTGTTGTCATCCCATATTCTCTGGCACACTAGTCTGCACCCT
GCGGTTCAAACTACAGGCTAGGCCCATCGACGGGGTCACACAGGAGGAAG
GTCTACACAGGAGGAGTTACCCCCACCTTCCTTCTGCGGTACATGCGTGA
GATTTTTTCTCGCGAGCAGGGGTCCGCGATCCCTACCCTCGTCGGCGAAG
CCGAATCTGCTTTTACTAACAGCATAGCCGCTTTCAAAGTAGCAAAGGAA
CACATTCACCGGGAATCGAACCCCCGTTCCTCTGCATCTAGTTGTTAACG
AGGGGACCACTAGTCCACCGGGGCGACCGGTGTGTGTTTGTGAACGAAAA
TGGCAACCTTTTTCGTTTATACCAGCTATCACGCAGCAGGTATCATACGT
CCTGTAGCAGAGAAAGTGCGGACATGGCGGTAATTTCAATTTTGCCGTCT
GATGAAAGGGCGTCCAAATGAGACTCGAACTCACACTGCTGTGAGCAAAA
AACTGCTGTGCTTGCTTGTGACTCGTGACGCCTGCGTGGAATATCTGTAC
GTGACGCTATACTGTATATCTATGCGGAATGGTTGCATTGGTACTGATTG
TAGACTAGACTTCAAAAACTGACCAATCGTATGTATGCTGAGAGAAAGCG
AGCGAGTGTTAGAACCGCCTCCCTTTCTTTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCG
ACCCCTTCCTTCTCTCCAACTGTCTCGACGGGTCTGTAGACCTGAGCACC
TGGCACCACTGCCGCACGCCAGGCCGGCGGGAGTGCCATCTTGAAACGAC
GCTCTGTTGCAGTAACTTCTGCTGTCAAGATTTTTAGGGTACACTTCGTA
CAACTGCTATACTTGTACTGCTGTAGCGGAATTTCTATGTACTCCGTATG
ATACGAAGTACATCGCCGCCGTATTCTTCGGTCTTCGGGTCCACGCTGCT
TATGCCGTGCTTCACGCCGGTCTATTTCCCCCCCTTTTTTTTTCCTCTGC
GAATTCTCCTCCCTCGACCACCACACGCATGTGAACGCGACCAACGTGCG
CCATGCTAACGAAGGATTTTTCATGTATCATGCAGCAGCATTGCCACTGC
TGCTGTACTGGTGTAATCATAAGAGTTCCATTCTCGCCGTAGCGTCGATC
GAAAGGCCACGGAAGTGCAACAAGTAGCTCAACCTTGGCACATCAGATCA
TGCCTCTGGAGATTCTGTCATGACTCTCGCTTGGTGTATGTGTATTTTTC
CTGACGCGGGATAGGTAAGGTGTGTGTGTGTCATCCCATTGATTCTGGGC
ACCAGTCTACACCTTTGGTTATGATGTGGGTGCTTCAGCCGGGGTCACAC
TGGAGGAAGGTCACCCACGAGCTTTTTCACTTTTTTTTATTTCGTTTTGT
GCCCACACCTTTCCTGCTGCGGTACTTGCCCTTGGTTTTTGGTGCGAGTC
GGGTTCAGCGAACCCTTCCCTCTGTTTACTCACAAGTGAATCGCTGAGGT
ATTGCGACGCCACAACAGTACAGCCTTTATGTATTTGAAATGTTGGCGCC
GAGGAGCGCGCCTCAACGCTCGCGGTATGAGTTGTCGCCGGTGCAGATGT
TCATGATACTCTTTGCGGGGAGGCAACTTATAAACAGCTAGTCCTGCGAG
CGGCTGCTCCGGCACGTTGAAAATACGAATGAAGTTCCGCAGCCCACAAG
CACTCTATATCATATAATATCATAACGCGGCTTCATACACGTTTCTTTTT
CTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATCCCGA
CAGCCGTAGGTGTCTATTTTGACAACTTGCGACATTTTGTTCGCTGATGC
CTTTTGGTTGACGTGCAGCTTTTTTTTCTCAATGCCGCAGTACGAAAGTT
TGTTGCTCCGAACTCCGTAGACATGTAGCCCCCACAAGCGCTCTCCCTcC
CCCCCCCCCCGCGTCCATTTACAAACGGTACCCTGAGGTCAAGATTAAAG
GAAATTAAAGAGTGGATGCATCCGTTCCCAGGGCTCAATGCGGTGCGCGC
TTGAAAACTGAAGGAAGACGTGGTAGGCGCAGACGGGAATGGCGGATCGA
TCTCCGACACGATTGATCCATGCGCAAGCAAGACAGCTCACACAAGCAGT
TGCATCGAGTCGAAAGCACTCTGTGTTAACCTTGTACCTGTAGAGAGGGA
TGGTGTGCGAACGCTGCTGCCGACATTTGTACAGTATGCAGCAGCAAGAG
TAGGCTGTCGTGAAAGATTACCACGCCGCGGCTTGGGTAAACCTGACAAT
CCGCTCCTTCTGATTGATGTGAACATTGTGTTTTCCTCACTTACACACAC
CTCCTTCGCATGCCGTCGTAAACGACAACATGTTCAACGAGAGAAGAGCG
AAACAGCCCTGACGTTTACCGGTGTGCGTGCTGCTCAGCTGCGATCCTCT
CATGCTGGGGAGAAGAACATTGAATTGCCGCAGGGAAGAAAAAATGAGCA
GCACGACGACCCCAGACTCATGAAACACAGCAAGCGAGCAGCAGCAGGCA
CACGCACACCCGAATGGAGAGGCT back to topCoding sequence (CDS) from alignment at P-littoralis_Contig10:477357..482180+ >mRNA_P-littoralis_Contig10.116.1 ID=mRNA_P-littoralis_Contig10.116.1|Name=mRNA_P-littoralis_Contig10.116.1|organism=Pylaiella littoralis U1_48|type=CDS|length=174bp|location=Sequence derived from alignment at P-littoralis_Contig10:477357..482180+ (Pylaiella littoralis U1_48)
ATGCCGCGATCGGCCCCGGCGCAGCATCACTTCGGGGCGGTCATATCGGA
CCGCGAGCCGGAGAAGAAGGATGAGGAAGCGTCAAAAGAGCTCGAGAAGT
TTCTGAAAGCGATGGGGCTGTACGAGAACGAAGAGGGCTCACGAAGGCGG
CAGGTCAAGATTAAAGGAAATTAA back to top
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