mRNA_P-littoralis_Contig10.106.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig10.106.1
Unique NamemRNA_P-littoralis_Contig10.106.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig10.106.1 vs. uniprot
Match: A0A1J4JXQ9_9EUKA (RIIa domain-containing protein n=1 Tax=Tritrichomonas foetus TaxID=1144522 RepID=A0A1J4JXQ9_9EUKA)

HSP 1 Score: 48.1 bits (113), Expect = 3.860e-5
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:   13 RIFMPEQIEVHKDLPGILKAYTKAVLRANLTNEKDIIMFSINYFQ 147
            R++  EQI+V  DLP ILKAY+KAV+R   T   D+I FS++YF+
Sbjct:    4 RMYCAEQIQVPPDLPPILKAYSKAVIRGKPT---DLIQFSVDYFK 45
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig10.106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1J4JXQ9_9EUKA3.860e-553.33RIIa domain-containing protein n=1 Tax=Tritrichomo... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig10contigP-littoralis_Contig10:442160..443743 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4787.PITG_15780T0
PFAMsRIIa
Model size159
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue4.71e-08
EggNOG OGs28VPH@1|root,2RG88@2759|Eukaryota,3QHUK@4776|Peronosporales
Ec32 ortholog descriptionDimerization-anchoring domain of cAMP-dependent protein kinase, regulatory subunit
Ec32 orthologEc-01_006490.1
DescriptionRegulatory subunit of type II PKA R-subunit
Cds size159
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789331.8171155-CDS-P-littoralis_Contig10:442159..4422791680789331.8171155-CDS-P-littoralis_Contig10:442159..442279Pylaiella littoralis U1_48CDSP-littoralis_Contig10 442160..442279 -
1680789331.8388832-CDS-P-littoralis_Contig10:443704..4437431680789331.8388832-CDS-P-littoralis_Contig10:443704..443743Pylaiella littoralis U1_48CDSP-littoralis_Contig10 443705..443743 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig10.106.1prot_P-littoralis_Contig10.106.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig10 442160..443743 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig10.106.1

>prot_P-littoralis_Contig10.106.1 ID=prot_P-littoralis_Contig10.106.1|Name=mRNA_P-littoralis_Contig10.106.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=53bp
MDVNRIFMPEQIEVHKDLPGILKAYTKAVLRANLTNEKDIIMFSINYFQY
KCE
back to top

mRNA from alignment at P-littoralis_Contig10:442160..443743-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig10.106.1 ID=mRNA_P-littoralis_Contig10.106.1|Name=mRNA_P-littoralis_Contig10.106.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1584bp|location=Sequence derived from alignment at P-littoralis_Contig10:442160..443743- (Pylaiella littoralis U1_48)
ATGGATGTCAACCGTATCTTCATGCCTGAGCAAATAGAGGTGGGCATCAC
TATGATATACGGAGTACCAGGTAGCAGATGTTTGTTGTCGGCTGTCTGCT
AGACCGTCTCAACATCGTGCATTTTGCATGCAACAAATGATCTCTCGTGC
AGGTGTGCCCGTTGGCGGTTCCAATCTCATTGTACCATATTGGTGGGACA
TGGGTATGGATTGAGCCACGTTTTAGCATGGATTCATATTGCAGTCCGCG
TACGTGGCTCGCTTTTCGGCAAGATATTTCTTTTGGGGGTCCGAGGGCGT
CGGAATGTTTTTTGATAGAACTGCAGTGTCAGTCAGTGATGTGGCTCGCT
TCGGCAAGAAGCGATAGGATTGAATGATACCATTGACGTATTTATTCTAA
CTTAAACTTCAAGCACTCTGTGAAGAGAGTACCACGCCCGATGTCCATTT
TATCGACACCTTAGCAACGGAATTCGGTATCTTTTTGTCTTTTTTGTCAC
TTCTCTGTGACTTTTTATCTTATTTTTGACTTTTTATTTCTTTTTATTTA
TTTCATTTTGTGACTTGGCTCTGGACCAGGCTTCCTTTTCTTGTTTTCTT
GTATCTTGTTCTATTTTTGTACAGCGTTGTGTGATTTCTCGGGGTCCGTT
TTTGCTTTTGCCGTAGTCTCCTTGTCGTGCCTTTATTTGGTGGACTGAGG
GGATCTCCCGAGTACTTTATACCTCTTTTGGGGCAAGCAGCCTGTGACCA
CGAAAATCGTACCTGATCGGGGGAGTACGGACATTAGAGGGTACTGAGGA
GAGATCGGAATGGTTTTTAATGTGAAGACAACAACAACAACTCTGTGAAT
TGTGGCTAAAATCGGCAATCTACAGCAGCAGTGAAAATGTAAGGTCGGAT
CAAGAGGTTGGGTGGACGTTGGCCATGTGCATACGATCGCAGGTTGGGAT
CACTCTCCCAACCTCCGTCCCCAACCTCGGGAGGTTGGTCATGCCTCCCA
ACGTCCCCCAACCTATCCCCCTGGTCACCTGTGAGCGTTTGGGGTGTATC
TCATCTGCGTCGTACGTTTGGTGGGCATAATTTACGCAGGCAGAGTCGAC
CTTTTTGTGTAGCGCAATCTGCCACTTCCCGATCGGGTGGCCACCACTTC
GTCGTCGGCGACGCGTGAAACCATTGCGAGCGGAATGGATCATCTGCGTT
CTCGTCGCTCAGCCATCTCGGCGGAAGCAATCATGCATCGCGCCGCACAA
ACACCCGTTTATTGCGCGTCGAGTCCGTCCATTAGCTTCTCCATTTCTAT
CGATCGCTTCAACACCATACATAGTCTTCTTTCACAAATGGTGTGTTTGT
ATGTTCTTCGTATTGCCATGCTTGCGCGATCCAGCTGTCTGTGCGTTGAT
TTTCGCCTTCGTGTATCGTGATCACTTCTGGTCTTGGCGGCGCGTTGTGC
AAACATAAGAAAAGGTCCACAAAGACCTCCCAGGAATATTGAAAGCTTAC
ACGAAGGCCGTCCTTCGCGCGAACCTCACAAACGAGAAGGACATCATCAT
GTTTTCTATCAACTACTTTCAGTACAAGTGCGAA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig10:442160..443743-

>mRNA_P-littoralis_Contig10.106.1 ID=mRNA_P-littoralis_Contig10.106.1|Name=mRNA_P-littoralis_Contig10.106.1|organism=Pylaiella littoralis U1_48|type=CDS|length=159bp|location=Sequence derived from alignment at P-littoralis_Contig10:442160..443743- (Pylaiella littoralis U1_48)
ATGGATGTCAACCGTATCTTCATGCCTGAGCAAATAGAGGTCCACAAAGA
CCTCCCAGGAATATTGAAAGCTTACACGAAGGCCGTCCTTCGCGCGAACC
TCACAAACGAGAAGGACATCATCATGTTTTCTATCAACTACTTTCAGTAC
AAGTGCGAA
back to top