mRNA_P-littoralis_Contig10.103.1 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig10.103.1 vs. uniprot
Match: D7FQD7_ECTSI (PAP_fibrillin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQD7_ECTSI) HSP 1 Score: 425 bits (1093), Expect = 4.030e-143 Identity = 229/289 (79.24%), Postives = 254/289 (87.89%), Query Frame = 3 Query: 123 MRLLSYMVLPQLVRLTANGFALGPAAGTGRGIELRNQNQHKRFSSTSHARRNVVVTGTSMSSVSTPADVDEVTVIKNSLLQVAAITERGQLATEAQRGDMDLLVERLEELKADQQLEPFKDEDMVGIWTLVYSSSQAFRSSPFFATFQALLGKEGVAERIFSYTDAFPNAKIGQARQIVNEDCTELLSRVEMSVWPHRWISGVVETRSKIVNDNVGDRLEVIVDDTRVSDSVLGKISPRLEELRVPVDQLSERLFDRIPRITLETVFLDQDLRVTRLPDRNFLIYVKDY 989
MRLL +L +LV L A GF L P G+GR I N+ H R S + V T MSSV TPADVDE+T+IKNSLLQVAA+TERGQLATEAQ+ DMDLL+ERLEELKA++ LEP+KDE+MVG WTLVYSSSQAFRSSPFFATFQAL+GK+GVAERIFS+TDAFPNAKIGQARQIVNEDCTELLSRVEMSVWPHRWISGVVETRSKIVND++GD+LEVIVDDTRVSDS+LGKISPRLEE+RVPVDQLSERLFDRIPRITL+TVFLDQDLRV+RLPDRNFL+YVKDY
Sbjct: 1 MRLLLCFLLARLVSLAA-GFGLRPGMGSGRSITAGNR--HTRHFSCCDGKH---VLTTRMSSVGTPADVDEITLIKNSLLQVAAMTERGQLATEAQQNDMDLLLERLEELKAEELLEPYKDENMVGTWTLVYSSSQAFRSSPFFATFQALIGKDGVAERIFSFTDAFPNAKIGQARQIVNEDCTELLSRVEMSVWPHRWISGVVETRSKIVNDDIGDQLEVIVDDTRVSDSILGKISPRLEEVRVPVDQLSERLFDRIPRITLDTVFLDQDLRVSRLPDRNFLVYVKDY 283
BLAST of mRNA_P-littoralis_Contig10.103.1 vs. uniprot
Match: A0A835ZIJ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIJ0_9STRA) HSP 1 Score: 160 bits (404), Expect = 5.270e-42 Identity = 90/198 (45.45%), Postives = 125/198 (63.13%), Query Frame = 3 Query: 408 QRGDMDLLVERLEELKADQQLEPFKDEDMVGIWTLVYSSSQAFRSSPFFATFQALLGKEGVAERIFSYTDAFPNAKIGQARQIV----NEDCTELLSRVEMSVWPHRWISGVVETRSKIVNDNVGDRLEVIVDDTRVSDSVLGKISP-RLEELRVPVDQLSERLFDRIPRITLETVFLDQDLRVTRLPDRNFLIYVKD 986
QR D++LLV RL+EL + EPF +DM+G WTLVYSS + FR P FA QAL G R++ A P A++G +Q + E + + + V+P ++ G +ET ++IVND++GD LEVIV+ + V++S L + P + VPV +LSER FDR+PR+ LET++LD D RVTRLPD LIYVKD
Sbjct: 2 QRDDVELLVTRLQELVPAE--EPFNGDDMLGSWTLVYSSGEVFRGDPVFAHIQALAGNPLWPNRVYRMAGAMPTARVGTVQQTIAAGGEEGRCKRCLVIRLEVFPWNYLQGTIETEARIVNDDIGDGLEVIVERSAVTESPLTRFWPGKNGPPAVPVARLSERFFDRLPRLALETLYLDSDFRVTRLPDDTLLIYVKD 197
BLAST of mRNA_P-littoralis_Contig10.103.1 vs. uniprot
Match: A0A7S0WSZ6_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WSZ6_9CHLO) HSP 1 Score: 107 bits (267), Expect = 1.860e-22 Identity = 79/216 (36.57%), Postives = 122/216 (56.48%), Query Frame = 3 Query: 345 IKNSLLQVAAITERGQLATEAQRGDMDLLVERLEELKADQQLEPFKDEDMVGIWTLVYSSSQAFRSSPFFATFQ-ALLGKEGVAERIFSYTDAFPNAKIGQARQIVNEDCTELLSRVEMSVWPHRWISGVVETRSKIVNDNVGDRLEVIVDDTRVSDSVLGKISPRLEELRVPVDQLSERLFDR-IPRITLETVFLDQDLRVTRL-PDRNFLIYVK 983
+K LL+ A +RGQ+ATE+Q+ ++++++ +LE +A + E + G W LVY+S +AFRSSPFF FQ L+G E +A IF +TDA P A +GQA Q + + E +S V++ V+P G V T S + L + V++TRV+ S L + L+ + VPV + E + R ++ + FLD +LRV R PD +Y K
Sbjct: 39 LKKVLLRHVAGIDRGQVATESQKQEIEMVISQLEASQAPMSEQLEVQEALQGKWQLVYTSVEAFRSSPFFWAFQEGLVGSEELASAIFKFTDAIPGATVGQAFQTFDFNTGECVSEVDLEVFPGA--KGCVVTTSTVRCSTPPTCLVLTVENTRVARSNL--LPFLLDSVVVPVKDVVEAVRGRGKTAVSADMTFLDGELRVARTRPDGAIFVYRK 250
BLAST of mRNA_P-littoralis_Contig10.103.1 vs. uniprot
Match: A0A7R9UZ95_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9UZ95_9CHLO) HSP 1 Score: 98.6 bits (244), Expect = 5.500e-20 Identity = 72/168 (42.86%), Postives = 94/168 (55.95%), Query Frame = 3 Query: 498 GIWTLVYSSSQAFRSSPFFATFQA--LLGKEGVAERIFSYTDAFPNAKIGQARQIVNEDCTELLSRVEMSVWPHRWI---SGVVETRSKIVNDNVGDRLEVIVDDTRVSDS-VLGKISPRLEELRVPVDQLSERLFDR-IPRITLETVFLDQDLRVTR-LPDRNFLIY 977
G W LVYSS +AFRSSPFF FQ L G +A IF+YTD+ P A IG ARQ ++ L+S V+++V P + SG V T I + RL V V DTRVS S V G++ L++L VPV + E L R + T +LD LRV R LP++ +Y
Sbjct: 29 GTWELVYSSVEAFRSSPFFWAFQEGLLAGNVNLASAIFAYTDSVPGATIGSARQTIDTSFGTLVSEVDLTVTPLPGLPGASGAVVTGCDIDASSGDGRLVVTVTDTRVSGSNVAGQL---LDQLSVPVKDIFEALRGSGAARTEVTTTYLDDTLRVMRVLPNKELFVY 193
BLAST of mRNA_P-littoralis_Contig10.103.1 vs. uniprot
Match: A0A0D2KT63_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2KT63_9CHLO) HSP 1 Score: 95.9 bits (237), Expect = 7.560e-18 Identity = 69/174 (39.66%), Postives = 98/174 (56.32%), Query Frame = 3 Query: 498 GIWTLVYSSSQAFRSSPFFATFQALL-------GKEG--------VAERIFSYTDAFPNAKIGQARQIVNEDCTELLSRVEMSVWPHRWISGVVETRSKIVNDNVGDR-------LEVIVDDTRVSDSVLGKISPRLEELRVPVDQLSERLF-DRIPRITLETVFLDQDLRVTR 950
G W L+Y++++AFR+SPFFA+F ++ G G +A+ IF++TDA P A IG A QI+ L+S V++SV+P + G V TRS++ LE+ V+ TRV S SP L+++ VPV+QL ERL R+T E FLDQ+LRVTR
Sbjct: 163 GRWELLYANTEAFRNSPFFASFSNVVSGLADVAGLSGTIDVPNGALADAIFAFTDAIPGATIGAAYQIITPGA--LVSEVDLSVFPG--LRGTVVTRSRLERPATAGGAGGAPQVLELFVESTRVERS---NFSPLLDQVSVPVEQLIERLRGSEAARVTYEVTFLDQNLRVTR 329
BLAST of mRNA_P-littoralis_Contig10.103.1 vs. uniprot
Match: A0A5J4Z5Z5_PORPP (Light-induced protein, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z5Z5_PORPP) HSP 1 Score: 91.7 bits (226), Expect = 4.580e-16 Identity = 70/216 (32.41%), Postives = 117/216 (54.17%), Query Frame = 3 Query: 342 VIKNSLLQVAAITERGQLATEAQRGDMDLLVERLEELKADQQLEPFKDEDMVGIWTLVYSSSQAFRSSPFFATFQALLGKEGVAERIFSYTDAFPNAKIGQARQIVNEDCTELLSRVEMSVWPHRWISGVVETRSKIVNDNVGDRLEVIVDDTRVSD-SVLGKISPRLEELRVPVDQLSERLFDRIPRITLETVFLDQDLRVTRLPDRNFLIYVKD 986
V+K L+ +AA + RGQ A+ QR +++L +RLEEL + +P + G+W L+YSS+Q +++SPF LLG A P ++G RQ + D E ++ V ++ +P ISG V T +I + G RLE V+ T + S+ G++ + ++ +PV Q+ ERL +P +TV+LD +R++R + I+VK+
Sbjct: 224 VLKTRLVTLAAASNRGQSASVTQRDLIEVLAKRLEELNPNP--DPVDMPMIDGVWDLIYSSTQLYKTSPF------LLGA------------ATPLVQVGLVRQTIFVDSGEAINEVSVTSFPA--ISGRVITTMRIAPVS-GKRLECKVEKTELKGGSIAGRLDIGMLDVDIPVQQVVERLNGTVPETFFDTVYLDDLMRISRSKNGALYIFVKE 416
BLAST of mRNA_P-littoralis_Contig10.103.1 vs. uniprot
Match: A0A7S2Q3I4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q3I4_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 5.130e-16 Identity = 72/225 (32.00%), Postives = 125/225 (55.56%), Query Frame = 3 Query: 345 IKNSLLQVAAITERGQLATEAQRGDMDLLVERLEELKADQQLEPFKDE--DMVGIWTLVYSSSQAFRSSPFFATFQALLGKEG--VAERIFSYTDAFPNA-KIGQARQIVNEDCTELLSRVEMSVW-----PHRWISGVVETRSKIVNDNVGDRLEVIVDDTRVSDSVLGKISPRLEE--LRVPVDQLSERLFDRIPRITLETVFLDQDLRVTRLPDRNFLIYVK 983
+K L+ ++++T RG AT + +L+V+ + +L+A L P D + G W L YSS+Q+FRSSPFF ++ LG + +AE F DA A ++G+ RQI++++ EL+S E+SV P + + G V T +++ + E+ V T+V S + + L++ L VPV + + + +P TL+T ++D+ LR+TR D NF ++ +
Sbjct: 66 LKRELILLSSVTNRGSCATTE---ESNLVVDLVTQLEA---LNPTADPAANCQGDWELCYSSTQSFRSSPFFLAIRSFLGDDNKQIAESAFDIHDAATTASRVGKVRQIIDKNNNELVSEYEVSVGLLPGLPVQ-VKGTVITSAEMSVIRP-ESWELEVKGTKVKGSNVPFLDAFLDDSDLEVPVGEAYKAVSGAVPVSTLKTFYVDEGLRITRDVDENFYVFTR 282
BLAST of mRNA_P-littoralis_Contig10.103.1 vs. uniprot
Match: A0A1E7FER3_9STRA (PAP_fibrillin domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FER3_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 1.250e-15 Identity = 72/227 (31.72%), Postives = 131/227 (57.71%), Query Frame = 3 Query: 345 IKNSLLQVAAITERGQLATEAQRGDMDLLVERLEELKADQQLEPFKD--EDMVGIWTLVYSSSQAFRSSPFFATFQALLGKEG--VAERIFS-YTDAFPNAKIGQARQIVNEDCTELLSRVEMSVWPHRWI----SGVVETRSKIVNDNVGDR-LEVIVDDTRVSDSVLGKISPRLEELRV--PV-DQLSERLFDRIPRITLETVFLDQDLRVTRLPDRNFLIYVKD 986
+K LL +A++T+RG A++ +R D++++ + +L+A L P ++ G W L YSS+Q FRSSPFF + + +G E + E F+ + A +++G+ RQIV D +L+S V + V I G V T + + D V D+ E+ +++T+V+ S + I+ +++L+V PV D S + ++P I + T ++D+ LR+TR D NF +++++
Sbjct: 64 LKRELLLLASVTDRGAFASKEER---DIVIDLVAQLEA---LNPTRNPASHCEGEWDLCYSSTQFFRSSPFFQSIRVAVGDENKDMTENGFALHEQATMGSRVGRVRQIVTSD-NKLISEVSLEVGTLPGIPISLQGTVVTTASL--DVVSDKNWELQIENTKVTGSNIPFINMFMDDLQVELPVGDFYSTVMSGKVPVIPMTTFYVDEALRITRDIDENFFVFIRE 281
BLAST of mRNA_P-littoralis_Contig10.103.1 vs. uniprot
Match: A0A7S2Y236_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y236_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 1.630e-15 Identity = 87/297 (29.29%), Postives = 145/297 (48.82%), Query Frame = 3 Query: 147 LPQLVRLTANGFALGPAAGTGRGIELRNQNQ----HKRFSSTSHARRNVVVTGTSMSSVSTPADVDEVTVI-----KNSLLQVAAITERGQLATEAQRGDMDLLVERLEELKADQQLEPFKDEDMV--GIWTLVYSSSQAFRSSPFFATFQALLG--KEGVAERIFSYTDAFPNA-KIGQARQIVNEDCTELLSRVEMSVWPHR--WISGVVETRSKIVNDNVGDRLEVIVDDTRVSDSVLGKISPRLEELRV--PVDQLSERLFDRIPRITLETVFLDQDLRVTRLPDRNFLIYVK 983
L LV L+ N A P TG I L ++ K F+ + + +S+ D+DE I K LL +++++ RG+ A+ D +++ + + +L+A L P +D M G W L SS+Q FRSSPFF T +A +G + +AE F D A +IG+ RQ + D +E+ V+P + G V TR+ + E+ V T V S + ++ L+ L++ PV+Q+ ER+ +P + L+T ++D+ +R+TR D NF +Y +
Sbjct: 9 LALLVLLSTNADAFAPCGRTGTSIGLSSERNVPVGSKLFTYYDESSPSDYDEDDLVSAKGVEVDMDEGDDIIRDELKRELLLLSSVSNRGEFAS---LDDQNVITDLVAQLEA---LNPTEDPAMKCEGEWDLALSSTQFFRSSPFFLTIRAAMGASNKAMAENAFDIHDRATTAGRIGRVRQTIVGDTLTSEVDLEVGVFPGLPFRVKGSVITRASF-RPVSSETAELQVGATEVKGSNIPILNQYLDNLKLELPVNQIFERIQGSVPTVELKTYYIDEGMRITRDMDDNFFVYTR 298
BLAST of mRNA_P-littoralis_Contig10.103.1 vs. uniprot
Match: A0A2V3IV97_9FLOR (Chromoplast-specific carotenoid-associated protein C1, chromoplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IV97_9FLOR) HSP 1 Score: 87.0 bits (214), Expect = 2.780e-15 Identity = 68/213 (31.92%), Postives = 113/213 (53.05%), Query Frame = 3 Query: 357 LLQVAAITERGQLATEAQRGDMDLLVERLEELKADQQLEPFKDEDMVGIWTLVYSSSQAFRSSPFFATFQALLGKEGVAERIFSYTDAFPNAKIGQARQIVNEDCTELLSRVEMSVWPHRWISGVVETRSKIVNDNVGDRLEVIVDDTRVSDSVLGKISPRLE----ELRVPVDQLSERLFDRIPRITLETVFLDQDLRVTRLPDRNFLIYVK 983
LLQ AAIT+RGQ AT+AQ +D +V LEE+ + Q P + + + G W LVY++++ F+++PF A P ++GQ RQ ++ D +L + VE+ +P S V+T +I +RLEV V+ T ++ GKI+ R++ VPV+Q+ R+ + P ++T +LD+ LR++R + IY +
Sbjct: 88 LLQYAAITDRGQSATDAQVSAVDDIVMSLEEVNPNPQ--PVEIDLIDGEWNLVYTAAKLFQTNPFLMA------------------AATPLLQVGQVRQRISVDEGKLSTEVEVIAFPVT--SWTVKTTGRITPVGA-ERLEVTVETTNITG---GKIADRIDLGGISFDVPVEQIYSRIRNASPETYVDTYYLDETLRISRSKEGKLYIYTR 274 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig10.103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig10.103.1 >prot_P-littoralis_Contig10.103.1 ID=prot_P-littoralis_Contig10.103.1|Name=mRNA_P-littoralis_Contig10.103.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=290bp MRLLSYMVLPQLVRLTANGFALGPAAGTGRGIELRNQNQHKRFSSTSHARback to top mRNA from alignment at P-littoralis_Contig10:433887..441034+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig10.103.1 ID=mRNA_P-littoralis_Contig10.103.1|Name=mRNA_P-littoralis_Contig10.103.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7148bp|location=Sequence derived from alignment at P-littoralis_Contig10:433887..441034+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig10:433887..441034+ >mRNA_P-littoralis_Contig10.103.1 ID=mRNA_P-littoralis_Contig10.103.1|Name=mRNA_P-littoralis_Contig10.103.1|organism=Pylaiella littoralis U1_48|type=CDS|length=870bp|location=Sequence derived from alignment at P-littoralis_Contig10:433887..441034+ (Pylaiella littoralis U1_48)back to top |